Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:109332983-114333310

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811 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdmsc2 5 107413140 to 112286920 4873780 QTL modifier of muscularity 2
repro14 5 108614643 to 113883925 5269282 heritable phenotypic marker reproductive mutant 14, JAX Reproductive Mutagenesis Program
Vmn2r16 5 109330381 to 109364481 34100 + protein coding gene vomeronasal 2, receptor 16
Gm7171 5 109400644 to 109402077 1433 + pseudogene predicted gene 7171
Vmn2r17 5 109420013 to 109453387 33374 + protein coding gene vomeronasal 2, receptor 17
Tssr52468 5 109461282 to 109461294 12 - TSS region transcription start site region 52468
Gm18555 5 109473402 to 109473979 577 + pseudogene predicted gene, 18555
Gm8488 5 109527463 to 109529231 1768 - pseudogene predicted gene 8488
Tssr52469 5 109529546 to 109529548 2 - TSS region transcription start site region 52469
Tssr47859 5 109547327 to 109547336 9 + TSS region transcription start site region 47859
Cpgi16211 5 109550273 to 109550518 245 CpG island CpG island 16211
Cpgi16212 5 109551357 to 109551898 541 CpG island CpG island 16212
Gm8493 5 109551892 to 109554156 2264 - pseudogene predicted gene 8493
Cpgi16213 5 109553052 to 109553221 169 CpG island CpG island 16213
Tssr52470 5 109553184 to 109553216 32 - TSS region transcription start site region 52470
Crlf2 5 109554709 to 109558993 4284 - protein coding gene cytokine receptor-like factor 2
Cpgi16214 5 109555309 to 109558004 2695 CpG island CpG island 16214
Tssr52471 5 109555536 to 109555547 11 - TSS region transcription start site region 52471
Tssr52472 5 109555556 to 109555584 28 - TSS region transcription start site region 52472
Tssr52473 5 109556530 to 109556553 23 - TSS region transcription start site region 52473
Tssr52474 5 109557799 to 109557805 6 - TSS region transcription start site region 52474
Cpgi16215 5 109558344 to 109559217 873 CpG island CpG island 16215
Tssr1582 5 109558907 to 109558922 15 - TSS region transcription start site region 1582
Tssr52475 5 109558945 to 109558956 11 - TSS region transcription start site region 52475
Tssr52476 5 109558957 to 109559014 57 - TSS region transcription start site region 52476
Vmn2r-ps22 5 109566230 to 109573269 7039 - pseudogene vomeronasal 2, receptor, pseudogene 22
Vmn2r-ps23 5 109578019 to 109578589 570 - pseudogene vomeronasal 2, receptor, pseudogene 23
Gm28000 5 109599079 to 109599163 84 + unclassified non-coding RNA gene predicted gene, 28000
Tssr47860 5 109600941 to 109600946 5 + TSS region transcription start site region 47860
5430403G16Rik 5 109674545 to 109691041 16496 - protein coding gene RIKEN cDNA 5430403G16 gene
D5Mit314 5 109682300 to 109682419 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 314
Afw16 5 109682300 to 109682419 119 QTL abdominal fat weight QTL 16
Cpgi16216 5 109690646 to 109690843 197 CpG island CpG island 16216
Tssr52477 5 109690786 to 109690813 27 - TSS region transcription start site region 52477
Tssr52478 5 109690819 to 109690857 38 - TSS region transcription start site region 52478
4930522L14Rik 5 109735990 to 109751886 15896 - protein coding gene RIKEN cDNA 4930522L14 gene
Tssr52479 5 109751658 to 109751719 61 - TSS region transcription start site region 52479
Gm8508 5 109757525 to 109757887 362 - pseudogene predicted gene 8508
A430073D23Rik 5 109769407 to 109796298 26891 - lincRNA gene RIKEN cDNA A430073D23 gene
Cpgi16217 5 109795997 to 109796257 260 CpG island CpG island 16217
Tssr52480 5 109796270 to 109796286 16 - TSS region transcription start site region 52480
Gm10416 5 109833501 to 109834142 641 - pseudogene predicted pseudogene 10416
Tssr52481 5 109845002 to 109845009 7 - TSS region transcription start site region 52481
Tssr52482 5 109845018 to 109845058 40 - TSS region transcription start site region 52482
Gm35089 5 109859190 to 109866410 7220 - lncRNA gene predicted gene, 35089
Cpgi16218 5 109866510 to 109866810 300 CpG island CpG island 16218
AB010352 5 109866690 to 109885512 18822 + protein coding gene cDNA sequence AB010352
Tssr47861 5 109866701 to 109866747 46 + TSS region transcription start site region 47861
Gm26779 5 109886231 to 109891137 4906 + lincRNA gene predicted gene, 26779
Gm46918 5 109901577 to 109903696 2119 - protein coding gene predicted gene, 46918
Gm26808 5 109922649 to 109923481 832 - lincRNA gene predicted gene, 26808
Tssr47862 5 109923633 to 109923664 31 + TSS region transcription start site region 47862
Gm15446 5 109933563 to 109941710 8147 + protein coding gene predicted gene 15446
1010001B22Rik 5 109995511 to 109996398 887 - lincRNA gene RIKEN cDNA 1010001B22 gene
Tssr47863 5 109996506 to 109996522 16 + TSS region transcription start site region 47863
Zfp932 5 109996521 to 110010411 13890 + protein coding gene zinc finger protein 932
Gm17655 5 110046141 to 110047550 1409 - pseudogene predicted gene, 17655
Tssr52483 5 110058012 to 110058053 41 - TSS region transcription start site region 52483
Gm35315 5 110076136 to 110094420 18284 - protein coding gene predicted gene, 35315
Tssr52484 5 110083175 to 110083186 11 - TSS region transcription start site region 52484
Tssr52485 5 110086300 to 110086307 7 - TSS region transcription start site region 52485
Tssr52486 5 110086316 to 110086326 10 - TSS region transcription start site region 52486
Tssr52487 5 110086337 to 110086357 20 - TSS region transcription start site region 52487
Tssr52488 5 110094401 to 110094443 42 - TSS region transcription start site region 52488
Gm46940 5 110096817 to 110097732 915 - pseudogene predicted gene, 46940
Tssr52489 5 110097484 to 110097492 8 - TSS region transcription start site region 52489
Tssr47864 5 110099789 to 110099801 12 + TSS region transcription start site region 47864
Plcxd1 5 110099969 to 110105953 5984 + protein coding gene phosphatidylinositol-specific phospholipase C, X domain containing 1
Cpgi16219 5 110100186 to 110100746 560 CpG island CpG island 16219
Tssr47865 5 110100414 to 110100425 11 + TSS region transcription start site region 47865
Cpgi16220 5 110101109 to 110102518 1409 CpG island CpG island 16220
Tssr47866 5 110101177 to 110101216 39 + TSS region transcription start site region 47866
Tssr52490 5 110101205 to 110101240 35 - TSS region transcription start site region 52490
Gtpbp6 5 110103976 to 110108197 4221 - protein coding gene GTP binding protein 6 (putative)
Mrdq2 5 110105240 to 117955608 7850368 QTL modifier of retinal degeneration QTL 2
Cpgi16221 5 110106853 to 110108434 1581 CpG island CpG island 16221
Tssr52491 5 110108130 to 110108150 20 - TSS region transcription start site region 52491
Tssr52492 5 110108154 to 110108204 50 - TSS region transcription start site region 52492
Tssr52493 5 110108277 to 110108287 10 - TSS region transcription start site region 52493
Tssr47867 5 110110068 to 110110114 46 + TSS region transcription start site region 47867
Zfp605 5 110110092 to 110129794 19702 + protein coding gene zinc finger protein 605
Tssr47868 5 110110116 to 110110140 24 + TSS region transcription start site region 47868
Tssr47869 5 110110267 to 110110298 31 + TSS region transcription start site region 47869
Gm15484 5 110118022 to 110118849 827 - pseudogene predicted gene 15484
Tssr52494 5 110118945 to 110118947 2 - TSS region transcription start site region 52494
Cpgi16222 5 110135606 to 110136320 714 CpG island CpG island 16222
Tssr47870 5 110135823 to 110135887 64 + TSS region transcription start site region 47870
Chfr 5 110135842 to 110171972 36130 + protein coding gene checkpoint with forkhead and ring finger domains
Tssr47871 5 110136014 to 110136019 5 + TSS region transcription start site region 47871
Gm43136 5 110153487 to 110154122 635 - antisense lncRNA gene predicted gene 43136
Gm15787 5 110167508 to 110176504 8996 - lncRNA gene predicted gene 15787
Cpgi16223 5 110176423 to 110177409 986 CpG island CpG island 16223
Tssr52495 5 110176449 to 110176463 14 - TSS region transcription start site region 52495
Tssr52496 5 110176497 to 110176512 15 - TSS region transcription start site region 52496
Tssr47872 5 110176553 to 110176565 12 + TSS region transcription start site region 47872
Tssr47873 5 110176579 to 110176600 21 + TSS region transcription start site region 47873
Tssr47874 5 110176640 to 110176678 38 + TSS region transcription start site region 47874
Golga3 5 110176701 to 110226470 49769 + protein coding gene golgi autoantigen, golgin subfamily a, 3
Tssr47875 5 110176811 to 110176820 9 + TSS region transcription start site region 47875
Tssr47876 5 110176850 to 110176864 14 + TSS region transcription start site region 47876
Tssr47877 5 110176868 to 110176896 28 + TSS region transcription start site region 47877
Tssr47878 5 110176964 to 110176973 9 + TSS region transcription start site region 47878
Tssr47879 5 110181031 to 110181032 1 + TSS region transcription start site region 47879
Tssr47880 5 110204774 to 110204808 34 + TSS region transcription start site region 47880
Gm43138 5 110206580 to 110207287 707 + sense intronic lncRNA gene predicted gene 43138
5930411N13Rik 5 110227401 to 110230719 3318 - lncRNA gene RIKEN cDNA 5930411N13 gene
Cpgi16224 5 110230547 to 110231576 1029 CpG island CpG island 16224
Gm43137 5 110230608 to 110231201 593 - antisense lncRNA gene predicted gene 43137
Tssr52497 5 110230860 to 110230919 59 - TSS region transcription start site region 52497
Tssr47881 5 110230975 to 110231099 124 + TSS region transcription start site region 47881
Ankle2 5 110231004 to 110256651 25647 + protein coding gene ankyrin repeat and LEM domain containing 2
Tssr47882 5 110231117 to 110231133 16 + TSS region transcription start site region 47882
Tssr1583 5 110231140 to 110231165 25 + TSS region transcription start site region 1583
Tssr47883 5 110256002 to 110256014 12 + TSS region transcription start site region 47883
Pgam5 5 110259135 to 110269899 10764 - protein coding gene phosphoglycerate mutase family member 5
Gm26718 5 110259163 to 110269847 10684 + lincRNA gene predicted gene, 26718
Tssr47884 5 110261474 to 110261479 5 + TSS region transcription start site region 47884
Gm15788 5 110262161 to 110277267 15106 + antisense lncRNA gene predicted gene 15788
Cpgi16225 5 110269220 to 110270014 794 CpG island CpG island 16225
Tssr52498 5 110269816 to 110269894 78 - TSS region transcription start site region 52498
Pxmp2 5 110274286 to 110286168 11882 - protein coding gene peroxisomal membrane protein 2
Cpgi16226 5 110285641 to 110286751 1110 CpG island CpG island 16226
Tssr52499 5 110286010 to 110286028 18 - TSS region transcription start site region 52499
Tssr52500 5 110286043 to 110286052 9 - TSS region transcription start site region 52500
Tssr52501 5 110286146 to 110286155 9 - TSS region transcription start site region 52501
Tssr52502 5 110286159 to 110286177 18 - TSS region transcription start site region 52502
Pole 5 110286319 to 110337468 51149 + protein coding gene polymerase (DNA directed), epsilon
Tssr47885 5 110286326 to 110286391 65 + TSS region transcription start site region 47885
Tssr47886 5 110308801 to 110308806 5 + TSS region transcription start site region 47886
Tssr47887 5 110327643 to 110327652 9 + TSS region transcription start site region 47887
Gm26277 5 110328032 to 110328183 151 + snoRNA gene predicted gene, 26277
Gm15791 5 110328204 to 110328522 318 + pseudogene predicted gene 15791
Tssr1584 5 110330692 to 110330701 9 + TSS region transcription start site region 1584
Tssr47888 5 110330756 to 110330767 11 + TSS region transcription start site region 47888
Gm15792 5 110331206 to 110333203 1997 - antisense lncRNA gene predicted gene 15792
P2rx2 5 110339812 to 110343212 3400 - protein coding gene purinergic receptor P2X, ligand-gated ion channel, 2
Cpgi16227 5 110342218 to 110343133 915 CpG island CpG island 16227
Tssr52503 5 110342963 to 110343007 44 - TSS region transcription start site region 52503
Tssr52504 5 110343009 to 110343039 30 - TSS region transcription start site region 52504
Tssr47889 5 110343116 to 110343119 3 + TSS region transcription start site region 47889
Tssr47890 5 110344561 to 110344570 9 + TSS region transcription start site region 47890
Tssr47891 5 110344699 to 110344710 11 + TSS region transcription start site region 47891
Tssr47892 5 110344712 to 110344734 22 + TSS region transcription start site region 47892
Lrcol1 5 110344730 to 110356094 11364 + protein coding gene leucine rich colipase-like 1
Tssr47893 5 110344740 to 110344753 13 + TSS region transcription start site region 47893
Tssr47894 5 110344776 to 110344782 6 + TSS region transcription start site region 47894
Fbrsl1 5 110361754 to 110448503 86749 - protein coding gene fibrosin-like 1
Cpgi16228 5 110362903 to 110363893 990 CpG island CpG island 16228
A330095P18Rik 5 110368569 to 110370227 1658 unclassified gene RIKEN cDNA A330095P18 gene
Tssr52505 5 110378140 to 110378177 37 - TSS region transcription start site region 52505
Gm26711 5 110385835 to 110388073 2238 + lincRNA gene predicted gene, 26711
Cpgi16229 5 110386205 to 110387571 1366 CpG island CpG island 16229
Tssr52506 5 110387090 to 110387154 64 - TSS region transcription start site region 52506
Tssr52507 5 110387173 to 110387174 1 - TSS region transcription start site region 52507
D630050G16Rik 5 110402128 to 110404033 1905 unclassified gene RIKEN cDNA D630050G16 gene
Tssr1585 5 110446912 to 110446913 1 + TSS region transcription start site region 1585
Cpgi16230 5 110447286 to 110449206 1920 CpG island CpG island 16230
Tssr1586 5 110447967 to 110447969 2 + TSS region transcription start site region 1586
Gm42596 5 110447989 to 110449946 1957 + antisense lncRNA gene predicted gene 42596
Tssr47895 5 110448341 to 110448357 16 + TSS region transcription start site region 47895
Tssr52508 5 110448439 to 110448454 15 - TSS region transcription start site region 52508
Tssr52509 5 110448472 to 110448481 9 - TSS region transcription start site region 52509
Tssr52510 5 110448486 to 110448519 33 - TSS region transcription start site region 52510
Tssr52511 5 110448521 to 110448532 11 - TSS region transcription start site region 52511
Tssr47896 5 110467234 to 110467261 27 + TSS region transcription start site region 47896
Tssr52512 5 110471297 to 110471324 27 - TSS region transcription start site region 52512
Cpgi16231 5 110480662 to 110481852 1190 CpG island CpG island 16231
Gm32996 5 110480755 to 110482201 1446 - pseudogene predicted gene, 32996
Tssr47897 5 110514857 to 110514879 22 + TSS region transcription start site region 47897
Tssr47898 5 110514885 to 110514931 46 + TSS region transcription start site region 47898
A630023P12Rik 5 110514923 to 110525980 11057 + lincRNA gene RIKEN cDNA A630023P12 gene
Tssr47899 5 110514934 to 110514949 15 + TSS region transcription start site region 47899
Cpgi16232 5 110543903 to 110545363 1460 CpG island CpG island 16232
Tssr47900 5 110544297 to 110544314 17 + TSS region transcription start site region 47900
Tssr47901 5 110544326 to 110544370 44 + TSS region transcription start site region 47901
Galnt9 5 110544355 to 110621380 77025 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 9
Tssr47902 5 110544375 to 110544400 25 + TSS region transcription start site region 47902
Tssr47903 5 110565583 to 110565592 9 + TSS region transcription start site region 47903
Tssr47904 5 110594780 to 110594815 35 + TSS region transcription start site region 47904
Tssr47905 5 110597687 to 110597691 4 + TSS region transcription start site region 47905
Tssr47906 5 110603496 to 110603528 32 + TSS region transcription start site region 47906
Cpgi16233 5 110628203 to 110628456 253 CpG island CpG island 16233
Tssr47907 5 110630053 to 110630061 8 + TSS region transcription start site region 47907
Noc4l 5 110648419 to 110653382 4963 - protein coding gene NOC4 like
Cpgi16234 5 110652684 to 110654052 1368 CpG island CpG island 16234
Tssr52513 5 110653128 to 110653137 9 - TSS region transcription start site region 52513
Tssr52514 5 110653348 to 110653422 74 - TSS region transcription start site region 52514
Tssr47908 5 110653444 to 110653482 38 + TSS region transcription start site region 47908
Ddx51 5 110653451 to 110660496 7045 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
Gm42595 5 110661392 to 110662998 1606 + lincRNA gene predicted gene 42595
Ep400 5 110664373 to 110770717 106344 - protein coding gene E1A binding protein p400
Mir7026 5 110666075 to 110666141 66 - miRNA gene microRNA 7026
Gm22716 5 110677124 to 110677230 106 - snRNA gene predicted gene, 22716
Tssr52515 5 110682157 to 110682163 6 - TSS region transcription start site region 52515
Gm26079 5 110692049 to 110692181 132 - snoRNA gene predicted gene, 26079
Tssr52516 5 110729876 to 110729905 29 - TSS region transcription start site region 52516
Gm22583 5 110757085 to 110757191 106 + snRNA gene predicted gene, 22583
Tssr52517 5 110762458 to 110762461 3 - TSS region transcription start site region 52517
Cpgi16235 5 110769790 to 110771210 1420 CpG island CpG island 16235
Tssr52518 5 110770132 to 110770173 41 - TSS region transcription start site region 52518