Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:109233907-109883922

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm8473 5 109236877 to 109238530 1653 + pseudogene predicted gene 8473
Vmn2r15 5 109286269 to 109297556 11287 - protein coding gene vomeronasal 2, receptor 15
Vmn2r16 5 109330381 to 109364481 34100 + protein coding gene vomeronasal 2, receptor 16
Gm7171 5 109400644 to 109402077 1433 + pseudogene predicted gene 7171
Vmn2r17 5 109420013 to 109453387 33374 + protein coding gene vomeronasal 2, receptor 17
Tssr52468 5 109461282 to 109461294 12 - TSS region transcription start site region 52468
Gm18555 5 109473402 to 109473979 577 + pseudogene predicted gene, 18555
Gm8488 5 109527463 to 109529231 1768 - pseudogene predicted gene 8488
Tssr52469 5 109529546 to 109529548 2 - TSS region transcription start site region 52469
Tssr47859 5 109547327 to 109547336 9 + TSS region transcription start site region 47859
Cpgi16211 5 109550273 to 109550518 245 CpG island CpG island 16211
Cpgi16212 5 109551357 to 109551898 541 CpG island CpG island 16212
Gm8493 5 109551892 to 109554156 2264 - pseudogene predicted gene 8493
Cpgi16213 5 109553052 to 109553221 169 CpG island CpG island 16213
Tssr52470 5 109553184 to 109553216 32 - TSS region transcription start site region 52470
Crlf2 5 109554709 to 109558993 4284 - protein coding gene cytokine receptor-like factor 2
Cpgi16214 5 109555309 to 109558004 2695 CpG island CpG island 16214
Tssr52471 5 109555536 to 109555547 11 - TSS region transcription start site region 52471
Tssr52472 5 109555556 to 109555584 28 - TSS region transcription start site region 52472
Tssr52473 5 109556530 to 109556553 23 - TSS region transcription start site region 52473
Tssr52474 5 109557799 to 109557805 6 - TSS region transcription start site region 52474
Cpgi16215 5 109558344 to 109559217 873 CpG island CpG island 16215
Tssr1582 5 109558907 to 109558922 15 - TSS region transcription start site region 1582
Tssr52475 5 109558945 to 109558956 11 - TSS region transcription start site region 52475
Tssr52476 5 109558957 to 109559014 57 - TSS region transcription start site region 52476
Vmn2r-ps22 5 109566230 to 109573269 7039 - pseudogene vomeronasal 2, receptor, pseudogene 22
Vmn2r-ps23 5 109578019 to 109578589 570 - pseudogene vomeronasal 2, receptor, pseudogene 23
Gm28000 5 109599079 to 109599163 84 + unclassified non-coding RNA gene predicted gene, 28000
Tssr47860 5 109600941 to 109600946 5 + TSS region transcription start site region 47860
5430403G16Rik 5 109674545 to 109691041 16496 - protein coding gene RIKEN cDNA 5430403G16 gene
Afw16 5 109682300 to 109682419 119 QTL abdominal fat weight QTL 16
D5Mit314 5 109682300 to 109682419 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 314
Cpgi16216 5 109690646 to 109690843 197 CpG island CpG island 16216
Tssr52477 5 109690786 to 109690813 27 - TSS region transcription start site region 52477
Tssr52478 5 109690819 to 109690857 38 - TSS region transcription start site region 52478
4930522L14Rik 5 109735990 to 109751886 15896 - protein coding gene RIKEN cDNA 4930522L14 gene
Tssr52479 5 109751658 to 109751719 61 - TSS region transcription start site region 52479
Gm8508 5 109757525 to 109757887 362 - pseudogene predicted gene 8508
A430073D23Rik 5 109769407 to 109796298 26891 - lincRNA gene RIKEN cDNA A430073D23 gene
Cpgi16217 5 109795997 to 109796257 260 CpG island CpG island 16217
Tssr52480 5 109796270 to 109796286 16 - TSS region transcription start site region 52480
Gm10416 5 109833501 to 109834142 641 - pseudogene predicted pseudogene 10416
Tssr52481 5 109845002 to 109845009 7 - TSS region transcription start site region 52481
Tssr52482 5 109845018 to 109845058 40 - TSS region transcription start site region 52482
Gm35089 5 109859190 to 109866410 7220 - lncRNA gene predicted gene, 35089
Cpgi16218 5 109866510 to 109866810 300 CpG island CpG island 16218
AB010352 5 109866690 to 109885512 18822 + protein coding gene cDNA sequence AB010352
Tssr47861 5 109866701 to 109866747 46 + TSS region transcription start site region 47861