Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:108239373-108629409

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16196 5 108268452 to 108269730 1278 CpG island CpG island 16196
Tssr47811 5 108268897 to 108268924 27 + TSS region transcription start site region 47811
Dr1 5 108268897 to 108280521 11624 + protein coding gene down-regulator of transcription 1
Tssr47812 5 108268929 to 108268980 51 + TSS region transcription start site region 47812
Tssr47813 5 108269290 to 108269302 12 + TSS region transcription start site region 47813
Tssr47814 5 108269419 to 108269441 22 + TSS region transcription start site region 47814
Tssr47815 5 108269444 to 108269470 26 + TSS region transcription start site region 47815
Tssr47816 5 108269647 to 108269660 13 + TSS region transcription start site region 47816
Tssr47817 5 108269663 to 108269677 14 + TSS region transcription start site region 47817
Tssr47818 5 108279031 to 108279044 13 + TSS region transcription start site region 47818
Tssr47819 5 108279131 to 108279143 12 + TSS region transcription start site region 47819
Tssr47820 5 108279427 to 108279453 26 + TSS region transcription start site region 47820
Tssr47821 5 108279483 to 108279498 15 + TSS region transcription start site region 47821
Tssr47822 5 108279509 to 108279521 12 + TSS region transcription start site region 47822
Tssr47823 5 108279630 to 108279643 13 + TSS region transcription start site region 47823
D5Mit315 5 108305388 to 108305508 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 315
Gm43081 5 108311370 to 108312749 1379 - unclassified gene predicted gene 43081
Cpgi16197 5 108312299 to 108313282 983 CpG island CpG island 16197
Pigg 5 108312782 to 108349355 36573 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class G
Tssr47824 5 108312784 to 108312823 39 + TSS region transcription start site region 47824
9330198I05Rik 5 108360187 to 108363885 3698 + lincRNA gene RIKEN cDNA 9330198I05 gene
Gm42518 5 108364037 to 108364974 937 - lincRNA gene predicted gene 42518
Gm42517 5 108366073 to 108367922 1849 - protein coding gene predicted gene 42517
Cpgi16198 5 108366434 to 108369682 3248 CpG island CpG island 16198
Tssr47825 5 108367732 to 108367774 42 + TSS region transcription start site region 47825
Tssr52414 5 108367895 to 108367922 27 - TSS region transcription start site region 52414
Gm10419 5 108367994 to 108374478 6484 + lincRNA gene predicted gene 10419
Tssr52415 5 108369406 to 108369431 25 - TSS region transcription start site region 52415
Pde6b 5 108388373 to 108431743 43370 + protein coding gene phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide
Tssr47826 5 108388376 to 108388387 11 + TSS region transcription start site region 47826
Tssr47827 5 108388405 to 108388411 6 + TSS region transcription start site region 47827
Tssr47828 5 108388412 to 108388434 22 + TSS region transcription start site region 47828
Tssr47829 5 108388437 to 108388440 3 + TSS region transcription start site region 47829
Tssr47830 5 108388446 to 108388453 7 + TSS region transcription start site region 47830
Cpgi16199 5 108388625 to 108388829 204 CpG island CpG island 16199
Tssr52416 5 108390954 to 108390958 4 - TSS region transcription start site region 52416
Tssr47831 5 108397607 to 108397615 8 + TSS region transcription start site region 47831
Gm34254 5 108402034 to 108405574 3540 - lncRNA gene predicted gene, 34254
Tssr47832 5 108404857 to 108404881 24 + TSS region transcription start site region 47832
Tssr47833 5 108404934 to 108404946 12 + TSS region transcription start site region 47833
Tssr47834 5 108404973 to 108404978 5 + TSS region transcription start site region 47834
Tssr52417 5 108405515 to 108405540 25 - TSS region transcription start site region 52417
Tssr52418 5 108405556 to 108405567 11 - TSS region transcription start site region 52418
Tssr47835 5 108406052 to 108406059 7 + TSS region transcription start site region 47835
Gm34204 5 108421934 to 108426894 4960 - lncRNA gene predicted gene, 34204
Atp5k 5 108433253 to 108434378 1125 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E
Cpgi16200 5 108433932 to 108434717 785 CpG island CpG island 16200
Tssr52419 5 108434359 to 108434370 11 - TSS region transcription start site region 52419
Tssr52420 5 108434373 to 108434409 36 - TSS region transcription start site region 52420
Tssr47836 5 108434447 to 108434458 11 + TSS region transcription start site region 47836
Gm34319 5 108434528 to 108441598 7070 + lncRNA gene predicted gene, 34319
Mfsd7a 5 108441054 to 108448891 7837 - protein coding gene major facilitator superfamily domain containing 7A
Tssr52421 5 108447099 to 108447110 11 - TSS region transcription start site region 52421
Cpgi16201 5 108448619 to 108448984 365 CpG island CpG island 16201
Tssr52422 5 108448882 to 108448912 30 - TSS region transcription start site region 52422
Tssr52423 5 108449094 to 108449105 11 - TSS region transcription start site region 52423
Tssr52424 5 108449112 to 108449129 17 - TSS region transcription start site region 52424
Tssr52425 5 108449179 to 108449190 11 - TSS region transcription start site region 52425
Cpgi16202 5 108460851 to 108461957 1106 CpG island CpG island 16202
Pcgf3 5 108461215 to 108503099 41884 + protein coding gene polycomb group ring finger 3
Tssr47837 5 108461222 to 108461241 19 + TSS region transcription start site region 47837
Tssr47838 5 108461251 to 108461305 54 + TSS region transcription start site region 47838
Tssr47839 5 108461308 to 108461342 34 + TSS region transcription start site region 47839
Tssr47840 5 108461414 to 108461425 11 + TSS region transcription start site region 47840
Tssr47841 5 108517131 to 108517141 10 + TSS region transcription start site region 47841
Gm10086 5 108517179 to 108517532 353 + pseudogene predicted pseudogene 10086
Cplx1 5 108518554 to 108550024 31470 - protein coding gene complexin 1
Tssr52426 5 108519130 to 108519141 11 - TSS region transcription start site region 52426
Tssr52427 5 108519410 to 108519420 10 - TSS region transcription start site region 52427
Tssr52428 5 108519698 to 108519710 12 - TSS region transcription start site region 52428
Tssr52429 5 108519858 to 108519875 17 - TSS region transcription start site region 52429
Tssr52430 5 108520030 to 108520055 25 - TSS region transcription start site region 52430
Tssr47842 5 108520281 to 108520300 19 + TSS region transcription start site region 47842
Tssr52431 5 108525422 to 108525433 11 - TSS region transcription start site region 52431
Tssr52432 5 108525519 to 108525540 21 - TSS region transcription start site region 52432
Tssr52433 5 108532413 to 108532417 4 - TSS region transcription start site region 52433
Tssr52434 5 108548558 to 108548570 12 - TSS region transcription start site region 52434
Tssr52435 5 108548601 to 108548610 9 - TSS region transcription start site region 52435
Tssr52436 5 108548841 to 108548852 11 - TSS region transcription start site region 52436
Cpgi16203 5 108549355 to 108550362 1007 CpG island CpG island 16203
Tssr52437 5 108549934 to 108550002 68 - TSS region transcription start site region 52437
Gm3907 5 108550080 to 108553353 3273 unclassified gene predicted gene 3907
Gm43364 5 108550081 to 108553354 3273 - unclassified gene predicted gene 43364
Tssr52438 5 108550175 to 108550208 33 - TSS region transcription start site region 52438
Gak 5 108569411 to 108629755 60344 - protein coding gene cyclin G associated kinase
Tssr52439 5 108582141 to 108582164 23 - TSS region transcription start site region 52439
Tssr52440 5 108582860 to 108582879 19 - TSS region transcription start site region 52440
Tssr52441 5 108587814 to 108587819 5 - TSS region transcription start site region 52441
Tssr52442 5 108594418 to 108594422 4 - TSS region transcription start site region 52442
Gm43365 5 108598521 to 108600626 2105 - unclassified gene predicted gene 43365
Hmtb4 5 108614643 to 126805880 18191237 QTL hemostasis and thrombosis rebleeding time 4
repro14 5 108614643 to 113883925 5269282 heritable phenotypic marker reproductive mutant 14, JAX Reproductive Mutagenesis Program
D5Mit338 5 108614643 to 108614761 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 338
Nmf15 5 108614643 to 140687148 32072505 heritable phenotypic marker neuroscience mutagenesis facility, 15
Rgcs1 5 108614761 to 55230992 -53383769 QTL retinal ganglion cell susceptible 1
Tssr47843 5 108620221 to 108620225 4 + TSS region transcription start site region 47843
Cpgi16204 5 108629144 to 108630309 1165 CpG island CpG island 16204