Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:108108897-108440521

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mtf2 5 108065674 to 108109004 43330 + protein coding gene metal response element binding transcription factor 2
Tmed5 5 108121627 to 108132626 10999 - protein coding gene transmembrane p24 trafficking protein 5
Tssr52409 5 108122109 to 108122142 33 - TSS region transcription start site region 52409
Cpgi16195 5 108131969 to 108133136 1167 CpG island CpG island 16195
Tssr52410 5 108132490 to 108132503 13 - TSS region transcription start site region 52410
Tssr52411 5 108132513 to 108132538 25 - TSS region transcription start site region 52411
Tssr52412 5 108132541 to 108132570 29 - TSS region transcription start site region 52412
Tssr52413 5 108132577 to 108132588 11 - TSS region transcription start site region 52413
Ccdc18 5 108132799 to 108232951 100152 + protein coding gene coiled-coil domain containing 18
Tssr47808 5 108132803 to 108132884 81 + TSS region transcription start site region 47808
Tssr47809 5 108132885 to 108132896 11 + TSS region transcription start site region 47809
Gm7118 5 108145226 to 108146907 1681 - pseudogene predicted gene 7118
Gm8190 5 108154245 to 108154830 585 - pseudogene predicted gene 8190
Tssr47810 5 108161100 to 108161126 26 + TSS region transcription start site region 47810
Gm43083 5 108210959 to 108211434 475 - pseudogene predicted gene 43083
Cpgi16196 5 108268452 to 108269730 1278 CpG island CpG island 16196
Tssr47811 5 108268897 to 108268924 27 + TSS region transcription start site region 47811
Dr1 5 108268897 to 108280521 11624 + protein coding gene down-regulator of transcription 1
Tssr47812 5 108268929 to 108268980 51 + TSS region transcription start site region 47812
Tssr47813 5 108269290 to 108269302 12 + TSS region transcription start site region 47813
Tssr47814 5 108269419 to 108269441 22 + TSS region transcription start site region 47814
Tssr47815 5 108269444 to 108269470 26 + TSS region transcription start site region 47815
Tssr47816 5 108269647 to 108269660 13 + TSS region transcription start site region 47816
Tssr47817 5 108269663 to 108269677 14 + TSS region transcription start site region 47817
Tssr47818 5 108279031 to 108279044 13 + TSS region transcription start site region 47818
Tssr47819 5 108279131 to 108279143 12 + TSS region transcription start site region 47819
Tssr47820 5 108279427 to 108279453 26 + TSS region transcription start site region 47820
Tssr47821 5 108279483 to 108279498 15 + TSS region transcription start site region 47821
Tssr47822 5 108279509 to 108279521 12 + TSS region transcription start site region 47822
Tssr47823 5 108279630 to 108279643 13 + TSS region transcription start site region 47823
D5Mit315 5 108305388 to 108305508 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 315
Gm43081 5 108311370 to 108312749 1379 - unclassified gene predicted gene 43081
Cpgi16197 5 108312299 to 108313282 983 CpG island CpG island 16197
Pigg 5 108312782 to 108349355 36573 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class G
Tssr47824 5 108312784 to 108312823 39 + TSS region transcription start site region 47824
9330198I05Rik 5 108360187 to 108363885 3698 + lincRNA gene RIKEN cDNA 9330198I05 gene
Gm42518 5 108364037 to 108364974 937 - lincRNA gene predicted gene 42518
Gm42517 5 108366073 to 108367922 1849 - protein coding gene predicted gene 42517
Cpgi16198 5 108366434 to 108369682 3248 CpG island CpG island 16198
Tssr47825 5 108367732 to 108367774 42 + TSS region transcription start site region 47825
Tssr52414 5 108367895 to 108367922 27 - TSS region transcription start site region 52414
Gm10419 5 108367994 to 108374478 6484 + lincRNA gene predicted gene 10419
Tssr52415 5 108369406 to 108369431 25 - TSS region transcription start site region 52415
Pde6b 5 108388373 to 108431743 43370 + protein coding gene phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide
Tssr47826 5 108388376 to 108388387 11 + TSS region transcription start site region 47826
Tssr47827 5 108388405 to 108388411 6 + TSS region transcription start site region 47827
Tssr47828 5 108388412 to 108388434 22 + TSS region transcription start site region 47828
Tssr47829 5 108388437 to 108388440 3 + TSS region transcription start site region 47829
Tssr47830 5 108388446 to 108388453 7 + TSS region transcription start site region 47830
Cpgi16199 5 108388625 to 108388829 204 CpG island CpG island 16199
Tssr52416 5 108390954 to 108390958 4 - TSS region transcription start site region 52416
Tssr47831 5 108397607 to 108397615 8 + TSS region transcription start site region 47831
Gm34254 5 108402034 to 108405574 3540 - lncRNA gene predicted gene, 34254
Tssr47832 5 108404857 to 108404881 24 + TSS region transcription start site region 47832
Tssr47833 5 108404934 to 108404946 12 + TSS region transcription start site region 47833
Tssr47834 5 108404973 to 108404978 5 + TSS region transcription start site region 47834
Tssr52417 5 108405515 to 108405540 25 - TSS region transcription start site region 52417
Tssr52418 5 108405556 to 108405567 11 - TSS region transcription start site region 52418
Tssr47835 5 108406052 to 108406059 7 + TSS region transcription start site region 47835
Gm34204 5 108421934 to 108426894 4960 - lncRNA gene predicted gene, 34204
Atp5k 5 108433253 to 108434378 1125 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E
Cpgi16200 5 108433932 to 108434717 785 CpG island CpG island 16200
Tssr52419 5 108434359 to 108434370 11 - TSS region transcription start site region 52419
Tssr52420 5 108434373 to 108434409 36 - TSS region transcription start site region 52420
Tssr47836 5 108434447 to 108434458 11 + TSS region transcription start site region 47836
Gm34319 5 108434528 to 108441598 7070 + lncRNA gene predicted gene, 34319