Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:107900746-108230767

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16192 5 107900394 to 107901386 992 CpG island CpG island 16192
Rpl5 5 107900528 to 107909005 8477 + protein coding gene ribosomal protein L5
Tssr47794 5 107900750 to 107900792 42 + TSS region transcription start site region 47794
Tssr47795 5 107900859 to 107900879 20 + TSS region transcription start site region 47795
Tssr47796 5 107904553 to 107904556 3 + TSS region transcription start site region 47796
Snord21 5 107904555 to 107904648 93 + snoRNA gene small nucleolar RNA, C/D box 21
Tssr47797 5 107905175 to 107905178 3 + TSS region transcription start site region 47797
Gm22270 5 107905177 to 107905308 131 + snoRNA gene predicted gene, 22270
Tssr47798 5 107905344 to 107905353 9 + TSS region transcription start site region 47798
Gm26387 5 107907345 to 107907476 131 + snoRNA gene predicted gene, 26387
Dipk1a 5 107908053 to 107987085 79032 - protein coding gene divergent protein kinase domain 1A
Tssr47799 5 107941487 to 107941513 26 + TSS region transcription start site region 47799
Tssr52403 5 107967796 to 107967800 4 - TSS region transcription start site region 52403
Tssr52404 5 107972864 to 107972879 15 - TSS region transcription start site region 52404
Tssr52405 5 107976220 to 107976223 3 - TSS region transcription start site region 52405
D5Mit382 5 107984815 to 107984907 92 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-382
Cpgi16193 5 107986291 to 107987867 1576 CpG island CpG island 16193
Tssr52406 5 107987003 to 107987055 52 - TSS region transcription start site region 52406
Gm42150 5 107991420 to 108002804 11384 - lncRNA gene predicted gene, 42150
Tssr47800 5 108001205 to 108001220 15 + TSS region transcription start site region 47800
Gm9850 5 108002260 to 108002486 226 + pseudogene predicted gene 9850
Rps19-ps8 5 108055495 to 108055916 421 - pseudogene ribosomal protein S19, pseudogene 8
Tssr47801 5 108060733 to 108060749 16 + TSS region transcription start site region 47801
Cpgi16194 5 108065394 to 108066073 679 CpG island CpG island 16194
Tssr52407 5 108065518 to 108065540 22 - TSS region transcription start site region 52407
Tssr47802 5 108065667 to 108065682 15 + TSS region transcription start site region 47802
Mtf2 5 108065674 to 108109004 43330 + protein coding gene metal response element binding transcription factor 2
Tssr47803 5 108065696 to 108065738 42 + TSS region transcription start site region 47803
Tssr47804 5 108065746 to 108065767 21 + TSS region transcription start site region 47804
Tssr52408 5 108066210 to 108066226 16 - TSS region transcription start site region 52408
Tssr47805 5 108066369 to 108066391 22 + TSS region transcription start site region 47805
Tssr47806 5 108077949 to 108077968 19 + TSS region transcription start site region 47806
Tssr47807 5 108086092 to 108086099 7 + TSS region transcription start site region 47807
Tmed5 5 108121627 to 108132626 10999 - protein coding gene transmembrane p24 trafficking protein 5
Tssr52409 5 108122109 to 108122142 33 - TSS region transcription start site region 52409
Cpgi16195 5 108131969 to 108133136 1167 CpG island CpG island 16195
Tssr52410 5 108132490 to 108132503 13 - TSS region transcription start site region 52410
Tssr52411 5 108132513 to 108132538 25 - TSS region transcription start site region 52411
Tssr52412 5 108132541 to 108132570 29 - TSS region transcription start site region 52412
Tssr52413 5 108132577 to 108132588 11 - TSS region transcription start site region 52413
Ccdc18 5 108132799 to 108232951 100152 + protein coding gene coiled-coil domain containing 18
Tssr47808 5 108132803 to 108132884 81 + TSS region transcription start site region 47808
Tssr47809 5 108132885 to 108132896 11 + TSS region transcription start site region 47809
Gm7118 5 108145226 to 108146907 1681 - pseudogene predicted gene 7118
Gm8190 5 108154245 to 108154830 585 - pseudogene predicted gene 8190
Tssr47810 5 108161100 to 108161126 26 + TSS region transcription start site region 47810
Gm43083 5 108210959 to 108211434 475 - pseudogene predicted gene 43083