Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:107820226-108471907

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Evi5 5 107744795 to 107875107 130312 - protein coding gene ecotropic viral integration site 5
Cpgi16190 5 107830085 to 107830387 302 CpG island CpG island 16190
Tssr47788 5 107830154 to 107830170 16 + TSS region transcription start site region 47788
Ube2d2b 5 107830162 to 107831777 1615 + protein coding gene ubiquitin-conjugating enzyme E2D 2B
Tssr47789 5 107830223 to 107830234 11 + TSS region transcription start site region 47789
Tssr47790 5 107830244 to 107830259 15 + TSS region transcription start site region 47790
Tssr47791 5 107830262 to 107830312 50 + TSS region transcription start site region 47791
Tssr52391 5 107837475 to 107837491 16 - TSS region transcription start site region 52391
Tssr52392 5 107837500 to 107837501 1 - TSS region transcription start site region 52392
Gm16007 5 107844390 to 107844675 285 + pseudogene predicted gene 16007
Gm42149 5 107850069 to 107853022 2953 - lncRNA gene predicted gene, 42149
Tssr52393 5 107856935 to 107856938 3 - TSS region transcription start site region 52393
Tssr52394 5 107859210 to 107859212 2 - TSS region transcription start site region 52394
Tssr52395 5 107868178 to 107868183 5 - TSS region transcription start site region 52395
Cpgi16191 5 107868338 to 107869462 1124 CpG island CpG island 16191
Gm43592 5 107868474 to 107869638 1164 + unclassified gene predicted gene 43592
Tssr52396 5 107868974 to 107868990 16 - TSS region transcription start site region 52396
Tssr52397 5 107869012 to 107869056 44 - TSS region transcription start site region 52397
Tssr52398 5 107869100 to 107869123 23 - TSS region transcription start site region 52398
Tssr52399 5 107869132 to 107869143 11 - TSS region transcription start site region 52399
Tssr52400 5 107869153 to 107869175 22 - TSS region transcription start site region 52400
Tssr52401 5 107869293 to 107869310 17 - TSS region transcription start site region 52401
Tssr52402 5 107875035 to 107875073 38 - TSS region transcription start site region 52402
Cpgi16192 5 107900394 to 107901386 992 CpG island CpG island 16192
Tssr47792 5 107900500 to 107900509 9 + TSS region transcription start site region 47792
Rpl5 5 107900528 to 107909005 8477 + protein coding gene ribosomal protein L5
Tssr47793 5 107900532 to 107900577 45 + TSS region transcription start site region 47793
Tssr47794 5 107900750 to 107900792 42 + TSS region transcription start site region 47794
Tssr47795 5 107900859 to 107900879 20 + TSS region transcription start site region 47795
Tssr47796 5 107904553 to 107904556 3 + TSS region transcription start site region 47796
Snord21 5 107904555 to 107904648 93 + snoRNA gene small nucleolar RNA, C/D box 21
Tssr47797 5 107905175 to 107905178 3 + TSS region transcription start site region 47797
Gm22270 5 107905177 to 107905308 131 + snoRNA gene predicted gene, 22270
Tssr47798 5 107905344 to 107905353 9 + TSS region transcription start site region 47798
Gm26387 5 107907345 to 107907476 131 + snoRNA gene predicted gene, 26387
Dipk1a 5 107908053 to 107987085 79032 - protein coding gene divergent protein kinase domain 1A
Tssr47799 5 107941487 to 107941513 26 + TSS region transcription start site region 47799
Tssr52403 5 107967796 to 107967800 4 - TSS region transcription start site region 52403
Tssr52404 5 107972864 to 107972879 15 - TSS region transcription start site region 52404
Tssr52405 5 107976220 to 107976223 3 - TSS region transcription start site region 52405
D5Mit382 5 107984815 to 107984907 92 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-382
Cpgi16193 5 107986291 to 107987867 1576 CpG island CpG island 16193
Tssr52406 5 107987003 to 107987055 52 - TSS region transcription start site region 52406
Gm42150 5 107991420 to 108002804 11384 - lncRNA gene predicted gene, 42150
Tssr47800 5 108001205 to 108001220 15 + TSS region transcription start site region 47800
Gm9850 5 108002260 to 108002486 226 + pseudogene predicted gene 9850
Rps19-ps8 5 108055495 to 108055916 421 - pseudogene ribosomal protein S19, pseudogene 8
Tssr47801 5 108060733 to 108060749 16 + TSS region transcription start site region 47801
Cpgi16194 5 108065394 to 108066073 679 CpG island CpG island 16194
Tssr52407 5 108065518 to 108065540 22 - TSS region transcription start site region 52407
Tssr47802 5 108065667 to 108065682 15 + TSS region transcription start site region 47802
Mtf2 5 108065674 to 108109004 43330 + protein coding gene metal response element binding transcription factor 2
Tssr47803 5 108065696 to 108065738 42 + TSS region transcription start site region 47803
Tssr47804 5 108065746 to 108065767 21 + TSS region transcription start site region 47804
Tssr52408 5 108066210 to 108066226 16 - TSS region transcription start site region 52408
Tssr47805 5 108066369 to 108066391 22 + TSS region transcription start site region 47805
Tssr47806 5 108077949 to 108077968 19 + TSS region transcription start site region 47806
Tssr47807 5 108086092 to 108086099 7 + TSS region transcription start site region 47807
Tmed5 5 108121627 to 108132626 10999 - protein coding gene transmembrane p24 trafficking protein 5
Tssr52409 5 108122109 to 108122142 33 - TSS region transcription start site region 52409
Cpgi16195 5 108131969 to 108133136 1167 CpG island CpG island 16195
Tssr52410 5 108132490 to 108132503 13 - TSS region transcription start site region 52410
Tssr52411 5 108132513 to 108132538 25 - TSS region transcription start site region 52411
Tssr52412 5 108132541 to 108132570 29 - TSS region transcription start site region 52412
Tssr52413 5 108132577 to 108132588 11 - TSS region transcription start site region 52413
Ccdc18 5 108132799 to 108232951 100152 + protein coding gene coiled-coil domain containing 18
Tssr47808 5 108132803 to 108132884 81 + TSS region transcription start site region 47808
Tssr47809 5 108132885 to 108132896 11 + TSS region transcription start site region 47809
Gm7118 5 108145226 to 108146907 1681 - pseudogene predicted gene 7118
Gm8190 5 108154245 to 108154830 585 - pseudogene predicted gene 8190
Tssr47810 5 108161100 to 108161126 26 + TSS region transcription start site region 47810
Gm43083 5 108210959 to 108211434 475 - pseudogene predicted gene 43083
Cpgi16196 5 108268452 to 108269730 1278 CpG island CpG island 16196
Dr1 5 108268897 to 108280521 11624 + protein coding gene down-regulator of transcription 1
Tssr47811 5 108268897 to 108268924 27 + TSS region transcription start site region 47811
Tssr47812 5 108268929 to 108268980 51 + TSS region transcription start site region 47812
Tssr47813 5 108269290 to 108269302 12 + TSS region transcription start site region 47813
Tssr47814 5 108269419 to 108269441 22 + TSS region transcription start site region 47814
Tssr47815 5 108269444 to 108269470 26 + TSS region transcription start site region 47815
Tssr47816 5 108269647 to 108269660 13 + TSS region transcription start site region 47816
Tssr47817 5 108269663 to 108269677 14 + TSS region transcription start site region 47817
Tssr47818 5 108279031 to 108279044 13 + TSS region transcription start site region 47818
Tssr47819 5 108279131 to 108279143 12 + TSS region transcription start site region 47819
Tssr47820 5 108279427 to 108279453 26 + TSS region transcription start site region 47820
Tssr47821 5 108279483 to 108279498 15 + TSS region transcription start site region 47821
Tssr47822 5 108279509 to 108279521 12 + TSS region transcription start site region 47822
Tssr47823 5 108279630 to 108279643 13 + TSS region transcription start site region 47823
D5Mit315 5 108305388 to 108305508 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 315
Gm43081 5 108311370 to 108312749 1379 - unclassified gene predicted gene 43081
Cpgi16197 5 108312299 to 108313282 983 CpG island CpG island 16197
Pigg 5 108312782 to 108349355 36573 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class G
Tssr47824 5 108312784 to 108312823 39 + TSS region transcription start site region 47824
9330198I05Rik 5 108360187 to 108363885 3698 + lincRNA gene RIKEN cDNA 9330198I05 gene
Gm42518 5 108364037 to 108364974 937 - lincRNA gene predicted gene 42518
Gm42517 5 108366073 to 108367922 1849 - protein coding gene predicted gene 42517
Cpgi16198 5 108366434 to 108369682 3248 CpG island CpG island 16198
Tssr47825 5 108367732 to 108367774 42 + TSS region transcription start site region 47825
Tssr52414 5 108367895 to 108367922 27 - TSS region transcription start site region 52414
Gm10419 5 108367994 to 108374478 6484 + lincRNA gene predicted gene 10419
Tssr52415 5 108369406 to 108369431 25 - TSS region transcription start site region 52415
Pde6b 5 108388373 to 108431743 43370 + protein coding gene phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide
Tssr47826 5 108388376 to 108388387 11 + TSS region transcription start site region 47826
Tssr47827 5 108388405 to 108388411 6 + TSS region transcription start site region 47827
Tssr47828 5 108388412 to 108388434 22 + TSS region transcription start site region 47828
Tssr47829 5 108388437 to 108388440 3 + TSS region transcription start site region 47829
Tssr47830 5 108388446 to 108388453 7 + TSS region transcription start site region 47830
Cpgi16199 5 108388625 to 108388829 204 CpG island CpG island 16199
Tssr52416 5 108390954 to 108390958 4 - TSS region transcription start site region 52416
Tssr47831 5 108397607 to 108397615 8 + TSS region transcription start site region 47831
Gm34254 5 108402034 to 108405574 3540 - lncRNA gene predicted gene, 34254
Tssr47832 5 108404857 to 108404881 24 + TSS region transcription start site region 47832
Tssr47833 5 108404934 to 108404946 12 + TSS region transcription start site region 47833
Tssr47834 5 108404973 to 108404978 5 + TSS region transcription start site region 47834
Tssr52417 5 108405515 to 108405540 25 - TSS region transcription start site region 52417
Tssr52418 5 108405556 to 108405567 11 - TSS region transcription start site region 52418
Tssr47835 5 108406052 to 108406059 7 + TSS region transcription start site region 47835
Gm34204 5 108421934 to 108426894 4960 - lncRNA gene predicted gene, 34204
Atp5k 5 108433253 to 108434378 1125 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E
Cpgi16200 5 108433932 to 108434717 785 CpG island CpG island 16200
Tssr52419 5 108434359 to 108434370 11 - TSS region transcription start site region 52419
Tssr52420 5 108434373 to 108434409 36 - TSS region transcription start site region 52420
Tssr47836 5 108434447 to 108434458 11 + TSS region transcription start site region 47836
Gm34319 5 108434528 to 108441598 7070 + lncRNA gene predicted gene, 34319
Mfsd7a 5 108441054 to 108448891 7837 - protein coding gene major facilitator superfamily domain containing 7A
Tssr52421 5 108447099 to 108447110 11 - TSS region transcription start site region 52421
Cpgi16201 5 108448619 to 108448984 365 CpG island CpG island 16201
Tssr52422 5 108448882 to 108448912 30 - TSS region transcription start site region 52422
Tssr52423 5 108449094 to 108449105 11 - TSS region transcription start site region 52423
Tssr52424 5 108449112 to 108449129 17 - TSS region transcription start site region 52424
Tssr52425 5 108449179 to 108449190 11 - TSS region transcription start site region 52425
Cpgi16202 5 108460851 to 108461957 1106 CpG island CpG island 16202
Pcgf3 5 108461215 to 108503099 41884 + protein coding gene polycomb group ring finger 3
Tssr47837 5 108461222 to 108461241 19 + TSS region transcription start site region 47837
Tssr47838 5 108461251 to 108461305 54 + TSS region transcription start site region 47838
Tssr47839 5 108461308 to 108461342 34 + TSS region transcription start site region 47839
Tssr47840 5 108461414 to 108461425 11 + TSS region transcription start site region 47840