Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:106495192-107271321

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28050 5 106500893 to 106515981 15088 - lincRNA gene predicted gene, 28050
Gm33283 5 106519878 to 106528821 8943 + lncRNA gene predicted gene, 33283
Gm8350 5 106557732 to 106578906 21174 - unclassified gene predicted gene 8350
Gm28039 5 106557946 to 106696571 138625 - unclassified non-coding RNA gene predicted gene, 28039
Cpgi16173 5 106560328 to 106560553 225 CpG island CpG island 16173
Cpgi16174 5 106561110 to 106561696 586 CpG island CpG island 16174
Cpgi16175 5 106573904 to 106575023 1119 CpG island CpG island 16175
Tssr52342 5 106574680 to 106574698 18 - TSS region transcription start site region 52342
Tssr52343 5 106574706 to 106574727 21 - TSS region transcription start site region 52343
Gm29464 5 106574875 to 106575387 512 + lincRNA gene predicted gene 29464
Gm42145 5 106592982 to 106608169 15187 - lncRNA gene predicted gene, 42145
Gm17304 5 106609098 to 106609201 103 + protein coding gene predicted gene, 17304
Gm17937 5 106610321 to 106611025 704 + pseudogene predicted gene, 17937
Tssr52344 5 106614307 to 106614311 4 - TSS region transcription start site region 52344
Zfp644 5 106616739 to 106696830 80091 - protein coding gene zinc finger protein 644
Tssr52345 5 106624354 to 106624361 7 - TSS region transcription start site region 52345
Tssr52346 5 106624394 to 106624404 10 - TSS region transcription start site region 52346
Tssr52347 5 106624410 to 106624417 7 - TSS region transcription start site region 52347
Gm43421 5 106652809 to 106655713 2904 - unclassified gene predicted gene 43421
Gm24191 5 106669999 to 106670120 121 + snRNA gene predicted gene, 24191
Tssr52348 5 106680318 to 106680321 3 - TSS region transcription start site region 52348
Tssr52349 5 106691142 to 106691158 16 - TSS region transcription start site region 52349
Cpgi16176 5 106695747 to 106697160 1413 CpG island CpG island 16176
Tssr52350 5 106696530 to 106696586 56 - TSS region transcription start site region 52350
Tssr52351 5 106696759 to 106696784 25 - TSS region transcription start site region 52351
Tssr52352 5 106696788 to 106696816 28 - TSS region transcription start site region 52352
Tssr52353 5 106696819 to 106696839 20 - TSS region transcription start site region 52353
Tssr1578 5 106705528 to 106705531 3 + TSS region transcription start site region 1578
Gm8365 5 106738117 to 106738764 647 - pseudogene predicted gene 8365
Gm33327 5 106802021 to 106814773 12752 + lncRNA gene predicted gene, 33327
Cpgi16177 5 106802289 to 106802765 476 CpG island CpG island 16177
Cpgi16178 5 106825449 to 106825694 245 CpG island CpG island 16178
Hfm1 5 106840192 to 106926321 86129 - protein coding gene HFM1, ATP-dependent DNA helicase homolog
Gm27527 5 106879600 to 106879698 98 - miRNA gene predicted gene, 27527
Tssr52354 5 106879911 to 106879915 4 - TSS region transcription start site region 52354
Olfr719-ps 5 106906768 to 106906980 212 + pseudogene olfactory receptor 719, pseudogene
Cpgi16179 5 106925598 to 106926545 947 CpG island CpG island 16179
Tssr52355 5 106925839 to 106925864 25 - TSS region transcription start site region 52355
Tssr52356 5 106926245 to 106926284 39 - TSS region transcription start site region 52356
Tssr1579 5 106926557 to 106926567 10 - TSS region transcription start site region 1579
Cpgi16180 5 106964075 to 106965141 1066 CpG island CpG island 16180
Tssr47757 5 106964319 to 106964383 64 + TSS region transcription start site region 47757
Cdc7 5 106964322 to 106984432 20110 + protein coding gene cell division cycle 7 (S. cerevisiae)
Tssr47758 5 106977654 to 106977661 7 + TSS region transcription start site region 47758
Gm33371 5 107041711 to 107045659 3948 - lncRNA gene predicted gene, 33371
Gm33474 5 107048836 to 107056042 7206 + lincRNA gene predicted gene, 33474
D5Mit277 5 107054468 to 107054590 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 277
Tssr47759 5 107055174 to 107055201 27 + TSS region transcription start site region 47759
Gm42146 5 107085722 to 107094472 8750 - lncRNA gene predicted gene, 42146
Tssr52357 5 107090018 to 107090035 17 - TSS region transcription start site region 52357
Tgfbr3 5 107106570 to 107289595 183025 - protein coding gene transforming growth factor, beta receptor III
Tssr52358 5 107109328 to 107109333 5 - TSS region transcription start site region 52358
Tssr52359 5 107130610 to 107130623 13 - TSS region transcription start site region 52359
Gm43422 5 107132118 to 107135688 3570 - unclassified gene predicted gene 43422
Gm43423 5 107158478 to 107160571 2093 - unclassified gene predicted gene 43423
Tssr52360 5 107168534 to 107168538 4 - TSS region transcription start site region 52360
D5Mit175 5 107173096 to 107173175 79 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 175
Lmr24f 5 107173096 to 107173175 79 QTL leishmaniasis resistance 24f
Lmr24 5 107173175 to 52537120 -54636055 QTL leishmaniasis resistance 24
Lmr24a 5 107173175 to 52537120 -54636055 QTL leishmaniasis resistance 24a
Tssr52361 5 107173416 to 107173419 3 - TSS region transcription start site region 52361
Tssr52362 5 107176192 to 107176194 2 - TSS region transcription start site region 52362
Tssr52363 5 107178386 to 107178390 4 - TSS region transcription start site region 52363
Tssr52364 5 107192358 to 107192371 13 - TSS region transcription start site region 52364
Gm8145 5 107241623 to 107242367 744 + pseudogene predicted gene 8145
Gm42900 5 107254338 to 107256504 2166 - unclassified gene predicted gene 42900