Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:106457946-106796571

45 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Barhl2	5	106452523 to 106458166	5643	-	protein coding gene	BarH like homeobox 2
Cpgi16165	5	106457057 to 106459644	2587		CpG island	CpG island 16165
Tssr52338	5	106457943 to 106457954	11	-	TSS region	transcription start site region 52338
Tssr52339	5	106458409 to 106458418	9	-	TSS region	transcription start site region 52339
Tssr52340	5	106458455 to 106458470	15	-	TSS region	transcription start site region 52340
Tssr52341	5	106458477 to 106458496	19	-	TSS region	transcription start site region 52341
Gm33151	5	106458586 to 106459739	1153	+	lncRNA gene	predicted gene, 33151
Tssr47756	5	106458679 to 106458701	22	+	TSS region	transcription start site region 47756
Cpgi16166	5	106460054 to 106460572	518		CpG island	CpG island 16166
Cpgi16167	5	106463652 to 106464100	448		CpG island	CpG island 16167
Cpgi16168	5	106465109 to 106465337	228		CpG island	CpG island 16168
Cpgi16169	5	106465605 to 106466087	482		CpG island	CpG island 16169
Gm26872	5	106465800 to 106471007	5207	-	lincRNA gene	predicted gene, 26872
Cpgi16170	5	106467320 to 106467631	311		CpG island	CpG island 16170
Cpgi16171	5	106469555 to 106469857	302		CpG island	CpG island 16171
Cpgi16172	5	106470488 to 106471093	605		CpG island	CpG island 16172
Gm28050	5	106500893 to 106515981	15088	-	lincRNA gene	predicted gene, 28050
Gm33283	5	106519878 to 106528821	8943	+	lncRNA gene	predicted gene, 33283
Gm8350	5	106557732 to 106578906	21174	-	unclassified gene	predicted gene 8350
Gm28039	5	106557946 to 106696571	138625	-	unclassified non-coding RNA gene	predicted gene, 28039
Cpgi16173	5	106560328 to 106560553	225		CpG island	CpG island 16173
Cpgi16174	5	106561110 to 106561696	586		CpG island	CpG island 16174
Cpgi16175	5	106573904 to 106575023	1119		CpG island	CpG island 16175
Tssr52342	5	106574680 to 106574698	18	-	TSS region	transcription start site region 52342
Tssr52343	5	106574706 to 106574727	21	-	TSS region	transcription start site region 52343
Gm29464	5	106574875 to 106575387	512	+	lincRNA gene	predicted gene 29464
Gm42145	5	106592982 to 106608169	15187	-	lncRNA gene	predicted gene, 42145
Gm17304	5	106609098 to 106609201	103	+	protein coding gene	predicted gene, 17304
Gm17937	5	106610321 to 106611025	704	+	pseudogene	predicted gene, 17937
Tssr52344	5	106614307 to 106614311	4	-	TSS region	transcription start site region 52344
Zfp644	5	106616739 to 106696830	80091	-	protein coding gene	zinc finger protein 644
Tssr52345	5	106624354 to 106624361	7	-	TSS region	transcription start site region 52345
Tssr52346	5	106624394 to 106624404	10	-	TSS region	transcription start site region 52346
Tssr52347	5	106624410 to 106624417	7	-	TSS region	transcription start site region 52347
Gm43421	5	106652809 to 106655713	2904	-	unclassified gene	predicted gene 43421
Gm24191	5	106669999 to 106670120	121	+	snRNA gene	predicted gene, 24191
Tssr52348	5	106680318 to 106680321	3	-	TSS region	transcription start site region 52348
Tssr52349	5	106691142 to 106691158	16	-	TSS region	transcription start site region 52349
Cpgi16176	5	106695747 to 106697160	1413		CpG island	CpG island 16176
Tssr52350	5	106696530 to 106696586	56	-	TSS region	transcription start site region 52350
Tssr52351	5	106696759 to 106696784	25	-	TSS region	transcription start site region 52351
Tssr52352	5	106696788 to 106696816	28	-	TSS region	transcription start site region 52352
Tssr52353	5	106696819 to 106696839	20	-	TSS region	transcription start site region 52353
Tssr1578	5	106705528 to 106705531	3	+	TSS region	transcription start site region 1578
Gm8365	5	106738117 to 106738764	647	-	pseudogene	predicted gene 8365