Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:106141768-107671980

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16159 5 106181864 to 106182119 255 CpG island CpG island 16159
Gm5987 5 106215651 to 106216801 1150 + pseudogene predicted gene 5987
Gm38433 5 106272238 to 106272871 633 + pseudogene predicted gene, 38433
Tssr47753 5 106294152 to 106294159 7 + TSS region transcription start site region 47753
Gm32973 5 106295339 to 106322494 27155 - lncRNA gene predicted gene, 32973
Gm32921 5 106321340 to 106323217 1877 + lincRNA gene predicted gene, 32921
Tssr47754 5 106351507 to 106351521 14 + TSS region transcription start site region 47754
Tssr47755 5 106351528 to 106351552 24 + TSS region transcription start site region 47755
4930458A03Rik 5 106351535 to 106364234 12699 + lincRNA gene RIKEN cDNA 4930458A03 gene
Tssr1576 5 106351566 to 106351573 7 + TSS region transcription start site region 1576
Cpgi16160 5 106353715 to 106353909 194 CpG island CpG island 16160
Gm42915 5 106355362 to 106355684 322 - pseudogene predicted gene 42915
Cpgi16161 5 106363706 to 106363979 273 CpG island CpG island 16161
4930432H08Rik 5 106364561 to 106366849 2288 - lincRNA gene RIKEN cDNA 4930432H08 gene
Gm42916 5 106369012 to 106370818 1806 + lincRNA gene predicted gene 42916
Tssr1577 5 106445296 to 106445298 2 - TSS region transcription start site region 1577
Cpgi16162 5 106448173 to 106448712 539 CpG island CpG island 16162
Cpgi16163 5 106451806 to 106452250 444 CpG island CpG island 16163
Barhl2 5 106452523 to 106458166 5643 - protein coding gene BarH like homeobox 2
D5Mit1002 5 106452954 to 106453103 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1002
Cpgi16164 5 106453262 to 106453927 665 CpG island CpG island 16164
Cpgi16165 5 106457057 to 106459644 2587 CpG island CpG island 16165
Tssr52338 5 106457943 to 106457954 11 - TSS region transcription start site region 52338
Tssr52339 5 106458409 to 106458418 9 - TSS region transcription start site region 52339
Tssr52340 5 106458455 to 106458470 15 - TSS region transcription start site region 52340
Tssr52341 5 106458477 to 106458496 19 - TSS region transcription start site region 52341
Gm33151 5 106458586 to 106459739 1153 + lncRNA gene predicted gene, 33151
Tssr47756 5 106458679 to 106458701 22 + TSS region transcription start site region 47756
Cpgi16166 5 106460054 to 106460572 518 CpG island CpG island 16166
Cpgi16167 5 106463652 to 106464100 448 CpG island CpG island 16167
Cpgi16168 5 106465109 to 106465337 228 CpG island CpG island 16168
Cpgi16169 5 106465605 to 106466087 482 CpG island CpG island 16169
Gm26872 5 106465800 to 106471007 5207 - lincRNA gene predicted gene, 26872
Cpgi16170 5 106467320 to 106467631 311 CpG island CpG island 16170
Cpgi16171 5 106469555 to 106469857 302 CpG island CpG island 16171
Cpgi16172 5 106470488 to 106471093 605 CpG island CpG island 16172
Gm28050 5 106500893 to 106515981 15088 - lincRNA gene predicted gene, 28050
Gm33283 5 106519878 to 106528821 8943 + lncRNA gene predicted gene, 33283
Gm8350 5 106557732 to 106578906 21174 - unclassified gene predicted gene 8350
Gm28039 5 106557946 to 106696571 138625 - unclassified non-coding RNA gene predicted gene, 28039
Cpgi16173 5 106560328 to 106560553 225 CpG island CpG island 16173
Cpgi16174 5 106561110 to 106561696 586 CpG island CpG island 16174
Cpgi16175 5 106573904 to 106575023 1119 CpG island CpG island 16175
Tssr52342 5 106574680 to 106574698 18 - TSS region transcription start site region 52342
Tssr52343 5 106574706 to 106574727 21 - TSS region transcription start site region 52343
Gm29464 5 106574875 to 106575387 512 + lincRNA gene predicted gene 29464
Gm42145 5 106592982 to 106608169 15187 - lncRNA gene predicted gene, 42145
Gm17304 5 106609098 to 106609201 103 + protein coding gene predicted gene, 17304
Gm17937 5 106610321 to 106611025 704 + pseudogene predicted gene, 17937
Tssr52344 5 106614307 to 106614311 4 - TSS region transcription start site region 52344
Zfp644 5 106616739 to 106696830 80091 - protein coding gene zinc finger protein 644
Tssr52345 5 106624354 to 106624361 7 - TSS region transcription start site region 52345
Tssr52346 5 106624394 to 106624404 10 - TSS region transcription start site region 52346
Tssr52347 5 106624410 to 106624417 7 - TSS region transcription start site region 52347
Gm43421 5 106652809 to 106655713 2904 - unclassified gene predicted gene 43421
Gm24191 5 106669999 to 106670120 121 + snRNA gene predicted gene, 24191
Tssr52348 5 106680318 to 106680321 3 - TSS region transcription start site region 52348
Tssr52349 5 106691142 to 106691158 16 - TSS region transcription start site region 52349
Cpgi16176 5 106695747 to 106697160 1413 CpG island CpG island 16176
Tssr52350 5 106696530 to 106696586 56 - TSS region transcription start site region 52350
Tssr52351 5 106696759 to 106696784 25 - TSS region transcription start site region 52351
Tssr52352 5 106696788 to 106696816 28 - TSS region transcription start site region 52352
Tssr52353 5 106696819 to 106696839 20 - TSS region transcription start site region 52353
Tssr1578 5 106705528 to 106705531 3 + TSS region transcription start site region 1578
Gm8365 5 106738117 to 106738764 647 - pseudogene predicted gene 8365
Gm33327 5 106802021 to 106814773 12752 + lncRNA gene predicted gene, 33327
Cpgi16177 5 106802289 to 106802765 476 CpG island CpG island 16177
Cpgi16178 5 106825449 to 106825694 245 CpG island CpG island 16178
Hfm1 5 106840192 to 106926321 86129 - protein coding gene HFM1, ATP-dependent DNA helicase homolog
Gm27527 5 106879600 to 106879698 98 - miRNA gene predicted gene, 27527
Tssr52354 5 106879911 to 106879915 4 - TSS region transcription start site region 52354
Olfr719-ps 5 106906768 to 106906980 212 + pseudogene olfactory receptor 719, pseudogene
Cpgi16179 5 106925598 to 106926545 947 CpG island CpG island 16179
Tssr52355 5 106925839 to 106925864 25 - TSS region transcription start site region 52355
Tssr52356 5 106926245 to 106926284 39 - TSS region transcription start site region 52356
Tssr1579 5 106926557 to 106926567 10 - TSS region transcription start site region 1579
Cpgi16180 5 106964075 to 106965141 1066 CpG island CpG island 16180
Tssr47757 5 106964319 to 106964383 64 + TSS region transcription start site region 47757
Cdc7 5 106964322 to 106984432 20110 + protein coding gene cell division cycle 7 (S. cerevisiae)
Tssr47758 5 106977654 to 106977661 7 + TSS region transcription start site region 47758
Gm33371 5 107041711 to 107045659 3948 - lncRNA gene predicted gene, 33371
Gm33474 5 107048836 to 107056042 7206 + lincRNA gene predicted gene, 33474
D5Mit277 5 107054468 to 107054590 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 277
Tssr47759 5 107055174 to 107055201 27 + TSS region transcription start site region 47759
Gm42146 5 107085722 to 107094472 8750 - lncRNA gene predicted gene, 42146
Tssr52357 5 107090018 to 107090035 17 - TSS region transcription start site region 52357
Tgfbr3 5 107106570 to 107289595 183025 - protein coding gene transforming growth factor, beta receptor III
Tssr52358 5 107109328 to 107109333 5 - TSS region transcription start site region 52358
Tssr52359 5 107130610 to 107130623 13 - TSS region transcription start site region 52359
Gm43422 5 107132118 to 107135688 3570 - unclassified gene predicted gene 43422
Gm43423 5 107158478 to 107160571 2093 - unclassified gene predicted gene 43423
Tssr52360 5 107168534 to 107168538 4 - TSS region transcription start site region 52360
D5Mit175 5 107173096 to 107173175 79 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 175
Lmr24f 5 107173096 to 107173175 79 QTL leishmaniasis resistance 24f
Lmr24 5 107173175 to 52537120 -54636055 QTL leishmaniasis resistance 24
Lmr24a 5 107173175 to 52537120 -54636055 QTL leishmaniasis resistance 24a
Tssr52361 5 107173416 to 107173419 3 - TSS region transcription start site region 52361
Tssr52362 5 107176192 to 107176194 2 - TSS region transcription start site region 52362
Tssr52363 5 107178386 to 107178390 4 - TSS region transcription start site region 52363
Tssr52364 5 107192358 to 107192371 13 - TSS region transcription start site region 52364
Gm8145 5 107241623 to 107242367 744 + pseudogene predicted gene 8145
Gm42900 5 107254338 to 107256504 2166 - unclassified gene predicted gene 42900
Cpgi16181 5 107288381 to 107289929 1548 CpG island CpG island 16181
Tssr52365 5 107289289 to 107289300 11 - TSS region transcription start site region 52365
Tssr52366 5 107289363 to 107289378 15 - TSS region transcription start site region 52366
Tssr52367 5 107289432 to 107289443 11 - TSS region transcription start site region 52367
Tssr52368 5 107289496 to 107289525 29 - TSS region transcription start site region 52368
Tssr52369 5 107289530 to 107289551 21 - TSS region transcription start site region 52369
Tssr52370 5 107289561 to 107289637 76 - TSS region transcription start site region 52370
Gm22557 5 107302946 to 107303047 101 + snRNA gene predicted gene, 22557
Cpgi16182 5 107330914 to 107331452 538 CpG island CpG island 16182
Tssr47760 5 107331137 to 107331146 9 + TSS region transcription start site region 47760
Tssr47761 5 107331157 to 107331197 40 + TSS region transcription start site region 47761
Brdt 5 107331159 to 107387058 55899 + protein coding gene bromodomain, testis-specific
Tssr47762 5 107333118 to 107333134 16 + TSS region transcription start site region 47762
Cpgi16183 5 107359440 to 107360025 585 CpG island CpG island 16183
Tssr47763 5 107359543 to 107359586 43 + TSS region transcription start site region 47763
Tssr47764 5 107359606 to 107359618 12 + TSS region transcription start site region 47764
Tssr47765 5 107359826 to 107359849 23 + TSS region transcription start site region 47765
Gm8152 5 107381381 to 107382017 636 - pseudogene predicted gene 8152
Gm42902 5 107392731 to 107403480 10749 - antisense lncRNA gene predicted gene 42902
n-R5s173 5 107401319 to 107401437 118 + rRNA gene nuclear encoded rRNA 5S 173
Cpgi16184 5 107402956 to 107404052 1096 CpG island CpG island 16184
Ephx4 5 107403513 to 107430035 26522 + protein coding gene epoxide hydrolase 4
Tssr47766 5 107403524 to 107403534 10 + TSS region transcription start site region 47766
Tssr47767 5 107403591 to 107403611 20 + TSS region transcription start site region 47767
Tssr52371 5 107403620 to 107403638 18 - TSS region transcription start site region 52371
Gm17202 5 107404823 to 107431910 27087 - antisense lncRNA gene predicted gene 17202
Tssr52372 5 107406361 to 107406386 25 - TSS region transcription start site region 52372
Mdmsc2 5 107413140 to 112286920 4873780 QTL modifier of muscularity 2
D5Mit239 5 107413140 to 107413285 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 239
Cfsw2 5 107413140 to 107413285 145 QTL cystic fibrosis survival to weaning 2
Hycdc 5 107413140 to 107413285 145 QTL hypercapnic duty cycle
Tssr47768 5 107431541 to 107431558 17 + TSS region transcription start site region 47768
Lpcat2b 5 107431549 to 107435039 3490 + protein coding gene lysophosphatidylcholine acyltransferase 2B
Tssr47769 5 107431565 to 107431571 6 + TSS region transcription start site region 47769
Tssr52373 5 107431874 to 107431880 6 - TSS region transcription start site region 52373
Tssr52374 5 107431934 to 107431940 6 - TSS region transcription start site region 52374
Cpgi16185 5 107437660 to 107438467 807 CpG island CpG island 16185
Tssr52375 5 107437763 to 107437781 18 - TSS region transcription start site region 52375
Tssr47770 5 107437908 to 107437991 83 + TSS region transcription start site region 47770
Btbd8 5 107437997 to 107491596 53599 + protein coding gene BTB (POZ) domain containing 8
Gm33885 5 107461553 to 107472079 10526 - lncRNA gene predicted gene, 33885
Gm9727 5 107478526 to 107479080 554 - pseudogene predicted gene 9727
Tssr52376 5 107478772 to 107478776 4 - TSS region transcription start site region 52376
Tssr47771 5 107484766 to 107484768 2 + TSS region transcription start site region 47771
Tssr47772 5 107497718 to 107497759 41 + TSS region transcription start site region 47772
A830010M20Rik 5 107497745 to 107512556 14811 + protein coding gene RIKEN cDNA A830010M20 gene
Tssr47773 5 107497762 to 107497802 40 + TSS region transcription start site region 47773
Tssr47774 5 107497874 to 107497885 11 + TSS region transcription start site region 47774
Gm42669 5 107507621 to 107580596 72975 + protein coding gene predicted gene 42669
1700028K03Rik 5 107534711 to 107551542 16831 + protein coding gene RIKEN cDNA 1700028K03 gene
Tssr47775 5 107534715 to 107534732 17 + TSS region transcription start site region 47775
Tssr47776 5 107534738 to 107534761 23 + TSS region transcription start site region 47776
Glmn 5 107548967 to 107597888 48921 - protein coding gene glomulin, FKBP associated protein
Cpgi16186 5 107597213 to 107598152 939 CpG island CpG island 16186
Rpap2 5 107597373 to 107661838 64465 + protein coding gene RNA polymerase II associated protein 2
Tssr52377 5 107597533 to 107597545 12 - TSS region transcription start site region 52377
Tssr52378 5 107597595 to 107597625 30 - TSS region transcription start site region 52378
Tssr47777 5 107597696 to 107597731 35 + TSS region transcription start site region 47777
Tssr47778 5 107597741 to 107597756 15 + TSS region transcription start site region 47778
Tssr47779 5 107597760 to 107597784 24 + TSS region transcription start site region 47779
A930041C12Rik 5 107630250 to 107633850 3600 - antisense lncRNA gene RIKEN cDNA A930041C12 gene
5830490A12Rik 5 107655679 to 107657434 1755 unclassified gene RIKEN cDNA 5830490A12 gene
Gm26692 5 107659461 to 107688010 28549 - lincRNA gene predicted gene, 26692