Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:105765362-106945684

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc8d 5 105699969 to 105815215 115246 + protein coding gene leucine rich repeat containing 8D
Tssr47747 5 105767282 to 105767326 44 + TSS region transcription start site region 47747
Tssr47748 5 105793615 to 105793652 37 + TSS region transcription start site region 47748
Rps15a-ps5 5 105797321 to 105797713 392 - pseudogene ribosomal protein S15A, pseudogene 5
Tssr52337 5 105800372 to 105800407 35 - TSS region transcription start site region 52337
Tssr1575 5 105800607 to 105800632 25 + TSS region transcription start site region 1575
D5Mit403 5 105804571 to 105804714 143 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 403
Lrrc8dos 5 105814773 to 105818988 4215 - antisense lncRNA gene leucine rich repeat containing 8D, opposite strand
Tssr47749 5 105816657 to 105816663 6 + TSS region transcription start site region 47749
D830014E11Rik 5 105826560 to 105832437 5877 + unclassified gene RIKEN cDNA D830014E11 gene
Tssr47750 5 105843763 to 105843764 1 + TSS region transcription start site region 47750
Gm10359 5 105862701 to 105863702 1001 - pseudogene predicted gene 10359
Gm43818 5 105866361 to 105866826 465 + pseudogene predicted gene 43818
1700061D13Rik 5 105866372 to 105866777 405 unclassified gene RIKEN cDNA 1700061D13 gene
Tssr47751 5 105876220 to 105876222 2 + TSS region transcription start site region 47751
Cpgi16157 5 105876261 to 105877413 1152 CpG island CpG island 16157
Tssr47752 5 105876532 to 105876585 53 + TSS region transcription start site region 47752
Zfp326 5 105876568 to 105915818 39250 + protein coding gene zinc finger protein 326
Gm43817 5 105879583 to 105881844 2261 + unclassified gene predicted gene 43817
4632409D06Rik 5 105958667 to 105961431 2764 unclassified gene RIKEN cDNA 4632409D06 gene
Gm19566 5 105980573 to 105981182 609 - pseudogene predicted gene, 19566
Cpgi16158 5 106038224 to 106038550 326 CpG island CpG island 16158
Gm25672 5 106072327 to 106072433 106 - snRNA gene predicted gene, 25672
Gm32736 5 106095091 to 106103547 8456 + lincRNA gene predicted gene, 32736
Cpgi16159 5 106181864 to 106182119 255 CpG island CpG island 16159
Gm5987 5 106215651 to 106216801 1150 + pseudogene predicted gene 5987
Gm38433 5 106272238 to 106272871 633 + pseudogene predicted gene, 38433
Tssr47753 5 106294152 to 106294159 7 + TSS region transcription start site region 47753
Gm32973 5 106295339 to 106322494 27155 - lncRNA gene predicted gene, 32973
Gm32921 5 106321340 to 106323217 1877 + lincRNA gene predicted gene, 32921
Tssr47754 5 106351507 to 106351521 14 + TSS region transcription start site region 47754
Tssr47755 5 106351528 to 106351552 24 + TSS region transcription start site region 47755
4930458A03Rik 5 106351535 to 106364234 12699 + lincRNA gene RIKEN cDNA 4930458A03 gene
Tssr1576 5 106351566 to 106351573 7 + TSS region transcription start site region 1576
Cpgi16160 5 106353715 to 106353909 194 CpG island CpG island 16160
Gm42915 5 106355362 to 106355684 322 - pseudogene predicted gene 42915
Cpgi16161 5 106363706 to 106363979 273 CpG island CpG island 16161
4930432H08Rik 5 106364561 to 106366849 2288 - lincRNA gene RIKEN cDNA 4930432H08 gene
Gm42916 5 106369012 to 106370818 1806 + lincRNA gene predicted gene 42916
Tssr1577 5 106445296 to 106445298 2 - TSS region transcription start site region 1577
Cpgi16162 5 106448173 to 106448712 539 CpG island CpG island 16162
Cpgi16163 5 106451806 to 106452250 444 CpG island CpG island 16163
Barhl2 5 106452523 to 106458166 5643 - protein coding gene BarH like homeobox 2
D5Mit1002 5 106452954 to 106453103 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1002
Cpgi16164 5 106453262 to 106453927 665 CpG island CpG island 16164
Cpgi16165 5 106457057 to 106459644 2587 CpG island CpG island 16165
Tssr52338 5 106457943 to 106457954 11 - TSS region transcription start site region 52338
Tssr52339 5 106458409 to 106458418 9 - TSS region transcription start site region 52339
Tssr52340 5 106458455 to 106458470 15 - TSS region transcription start site region 52340
Tssr52341 5 106458477 to 106458496 19 - TSS region transcription start site region 52341
Gm33151 5 106458586 to 106459739 1153 + lncRNA gene predicted gene, 33151
Tssr47756 5 106458679 to 106458701 22 + TSS region transcription start site region 47756
Cpgi16166 5 106460054 to 106460572 518 CpG island CpG island 16166
Cpgi16167 5 106463652 to 106464100 448 CpG island CpG island 16167
Cpgi16168 5 106465109 to 106465337 228 CpG island CpG island 16168
Cpgi16169 5 106465605 to 106466087 482 CpG island CpG island 16169
Gm26872 5 106465800 to 106471007 5207 - lincRNA gene predicted gene, 26872
Cpgi16170 5 106467320 to 106467631 311 CpG island CpG island 16170
Cpgi16171 5 106469555 to 106469857 302 CpG island CpG island 16171
Cpgi16172 5 106470488 to 106471093 605 CpG island CpG island 16172
Gm28050 5 106500893 to 106515981 15088 - lincRNA gene predicted gene, 28050
Gm33283 5 106519878 to 106528821 8943 + lncRNA gene predicted gene, 33283
Gm8350 5 106557732 to 106578906 21174 - unclassified gene predicted gene 8350
Gm28039 5 106557946 to 106696571 138625 - unclassified non-coding RNA gene predicted gene, 28039
Cpgi16173 5 106560328 to 106560553 225 CpG island CpG island 16173
Cpgi16174 5 106561110 to 106561696 586 CpG island CpG island 16174
Cpgi16175 5 106573904 to 106575023 1119 CpG island CpG island 16175
Tssr52342 5 106574680 to 106574698 18 - TSS region transcription start site region 52342
Tssr52343 5 106574706 to 106574727 21 - TSS region transcription start site region 52343
Gm29464 5 106574875 to 106575387 512 + lincRNA gene predicted gene 29464
Gm42145 5 106592982 to 106608169 15187 - lncRNA gene predicted gene, 42145
Gm17304 5 106609098 to 106609201 103 + protein coding gene predicted gene, 17304
Gm17937 5 106610321 to 106611025 704 + pseudogene predicted gene, 17937
Tssr52344 5 106614307 to 106614311 4 - TSS region transcription start site region 52344
Zfp644 5 106616739 to 106696830 80091 - protein coding gene zinc finger protein 644
Tssr52345 5 106624354 to 106624361 7 - TSS region transcription start site region 52345
Tssr52346 5 106624394 to 106624404 10 - TSS region transcription start site region 52346
Tssr52347 5 106624410 to 106624417 7 - TSS region transcription start site region 52347
Gm43421 5 106652809 to 106655713 2904 - unclassified gene predicted gene 43421
Gm24191 5 106669999 to 106670120 121 + snRNA gene predicted gene, 24191
Tssr52348 5 106680318 to 106680321 3 - TSS region transcription start site region 52348
Tssr52349 5 106691142 to 106691158 16 - TSS region transcription start site region 52349
Cpgi16176 5 106695747 to 106697160 1413 CpG island CpG island 16176
Tssr52350 5 106696530 to 106696586 56 - TSS region transcription start site region 52350
Tssr52351 5 106696759 to 106696784 25 - TSS region transcription start site region 52351
Tssr52352 5 106696788 to 106696816 28 - TSS region transcription start site region 52352
Tssr52353 5 106696819 to 106696839 20 - TSS region transcription start site region 52353
Tssr1578 5 106705528 to 106705531 3 + TSS region transcription start site region 1578
Gm8365 5 106738117 to 106738764 647 - pseudogene predicted gene 8365
Gm33327 5 106802021 to 106814773 12752 + lncRNA gene predicted gene, 33327
Cpgi16177 5 106802289 to 106802765 476 CpG island CpG island 16177
Cpgi16178 5 106825449 to 106825694 245 CpG island CpG island 16178
Hfm1 5 106840192 to 106926321 86129 - protein coding gene HFM1, ATP-dependent DNA helicase homolog
Gm27527 5 106879600 to 106879698 98 - miRNA gene predicted gene, 27527
Tssr52354 5 106879911 to 106879915 4 - TSS region transcription start site region 52354
Olfr719-ps 5 106906768 to 106906980 212 + pseudogene olfactory receptor 719, pseudogene
Cpgi16179 5 106925598 to 106926545 947 CpG island CpG island 16179
Tssr52355 5 106925839 to 106925864 25 - TSS region transcription start site region 52355
Tssr52356 5 106926245 to 106926284 39 - TSS region transcription start site region 52356
Tssr1579 5 106926557 to 106926567 10 - TSS region transcription start site region 1579