Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:105745091-106453547

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc8d 5 105699969 to 105815215 115246 + protein coding gene leucine rich repeat containing 8D
Tssr47746 5 105763896 to 105763911 15 + TSS region transcription start site region 47746
Tssr47747 5 105767282 to 105767326 44 + TSS region transcription start site region 47747
Tssr47748 5 105793615 to 105793652 37 + TSS region transcription start site region 47748
Rps15a-ps5 5 105797321 to 105797713 392 - pseudogene ribosomal protein S15A, pseudogene 5
Tssr52337 5 105800372 to 105800407 35 - TSS region transcription start site region 52337
Tssr1575 5 105800607 to 105800632 25 + TSS region transcription start site region 1575
D5Mit403 5 105804571 to 105804714 143 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 403
Lrrc8dos 5 105814773 to 105818988 4215 - antisense lncRNA gene leucine rich repeat containing 8D, opposite strand
Tssr47749 5 105816657 to 105816663 6 + TSS region transcription start site region 47749
D830014E11Rik 5 105826560 to 105832437 5877 + unclassified gene RIKEN cDNA D830014E11 gene
Tssr47750 5 105843763 to 105843764 1 + TSS region transcription start site region 47750
Gm10359 5 105862701 to 105863702 1001 - pseudogene predicted gene 10359
Gm43818 5 105866361 to 105866826 465 + pseudogene predicted gene 43818
1700061D13Rik 5 105866372 to 105866777 405 unclassified gene RIKEN cDNA 1700061D13 gene
Tssr47751 5 105876220 to 105876222 2 + TSS region transcription start site region 47751
Cpgi16157 5 105876261 to 105877413 1152 CpG island CpG island 16157
Tssr47752 5 105876532 to 105876585 53 + TSS region transcription start site region 47752
Zfp326 5 105876568 to 105915818 39250 + protein coding gene zinc finger protein 326
Gm43817 5 105879583 to 105881844 2261 + unclassified gene predicted gene 43817
4632409D06Rik 5 105958667 to 105961431 2764 unclassified gene RIKEN cDNA 4632409D06 gene
Gm19566 5 105980573 to 105981182 609 - pseudogene predicted gene, 19566
Cpgi16158 5 106038224 to 106038550 326 CpG island CpG island 16158
Gm25672 5 106072327 to 106072433 106 - snRNA gene predicted gene, 25672
Gm32736 5 106095091 to 106103547 8456 + lincRNA gene predicted gene, 32736
Cpgi16159 5 106181864 to 106182119 255 CpG island CpG island 16159
Gm5987 5 106215651 to 106216801 1150 + pseudogene predicted gene 5987
Gm38433 5 106272238 to 106272871 633 + pseudogene predicted gene, 38433
Tssr47753 5 106294152 to 106294159 7 + TSS region transcription start site region 47753
Gm32973 5 106295339 to 106322494 27155 - lncRNA gene predicted gene, 32973
Gm32921 5 106321340 to 106323217 1877 + lincRNA gene predicted gene, 32921
Tssr47754 5 106351507 to 106351521 14 + TSS region transcription start site region 47754
Tssr47755 5 106351528 to 106351552 24 + TSS region transcription start site region 47755
4930458A03Rik 5 106351535 to 106364234 12699 + lincRNA gene RIKEN cDNA 4930458A03 gene
Tssr1576 5 106351566 to 106351573 7 + TSS region transcription start site region 1576
Cpgi16160 5 106353715 to 106353909 194 CpG island CpG island 16160
Gm42915 5 106355362 to 106355684 322 - pseudogene predicted gene 42915
Cpgi16161 5 106363706 to 106363979 273 CpG island CpG island 16161
4930432H08Rik 5 106364561 to 106366849 2288 - lincRNA gene RIKEN cDNA 4930432H08 gene
Gm42916 5 106369012 to 106370818 1806 + lincRNA gene predicted gene 42916
Tssr1577 5 106445296 to 106445298 2 - TSS region transcription start site region 1577
Cpgi16162 5 106448173 to 106448712 539 CpG island CpG island 16162
Cpgi16163 5 106451806 to 106452250 444 CpG island CpG island 16163
Barhl2 5 106452523 to 106458166 5643 - protein coding gene BarH like homeobox 2
D5Mit1002 5 106452954 to 106453103 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1002
Cpgi16164 5 106453262 to 106453927 665 CpG island CpG island 16164