Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:105713224-106363550

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc8d 5 105699969 to 105815215 115246 + protein coding gene leucine rich repeat containing 8D
Tssr52333 5 105718225 to 105718236 11 - TSS region transcription start site region 52333
Tssr52334 5 105718267 to 105718274 7 - TSS region transcription start site region 52334
Tssr47732 5 105718658 to 105718697 39 + TSS region transcription start site region 47732
Tssr52335 5 105720633 to 105720665 32 - TSS region transcription start site region 52335
Tssr52336 5 105731153 to 105731168 15 - TSS region transcription start site region 52336
Tssr47733 5 105731629 to 105731639 10 + TSS region transcription start site region 47733
Tssr47734 5 105731689 to 105731700 11 + TSS region transcription start site region 47734
Tssr47735 5 105731701 to 105731708 7 + TSS region transcription start site region 47735
Tssr47736 5 105731734 to 105731752 18 + TSS region transcription start site region 47736
Tssr47737 5 105731755 to 105731798 43 + TSS region transcription start site region 47737
Tssr47738 5 105731829 to 105731847 18 + TSS region transcription start site region 47738
Cpgi16156 5 105731850 to 105732578 728 CpG island CpG island 16156
Tssr1574 5 105731851 to 105731873 22 + TSS region transcription start site region 1574
Tssr47739 5 105731877 to 105731888 11 + TSS region transcription start site region 47739
Tssr47740 5 105731891 to 105731909 18 + TSS region transcription start site region 47740
Tssr47741 5 105732082 to 105732111 29 + TSS region transcription start site region 47741
Tssr47742 5 105732217 to 105732259 42 + TSS region transcription start site region 47742
Tssr47743 5 105734510 to 105734530 20 + TSS region transcription start site region 47743
Tssr47744 5 105741589 to 105741598 9 + TSS region transcription start site region 47744
Tssr47745 5 105741863 to 105741870 7 + TSS region transcription start site region 47745
Tssr47746 5 105763896 to 105763911 15 + TSS region transcription start site region 47746
Tssr47747 5 105767282 to 105767326 44 + TSS region transcription start site region 47747
Tssr47748 5 105793615 to 105793652 37 + TSS region transcription start site region 47748
Rps15a-ps5 5 105797321 to 105797713 392 - pseudogene ribosomal protein S15A, pseudogene 5
Tssr52337 5 105800372 to 105800407 35 - TSS region transcription start site region 52337
Tssr1575 5 105800607 to 105800632 25 + TSS region transcription start site region 1575
D5Mit403 5 105804571 to 105804714 143 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 403
Lrrc8dos 5 105814773 to 105818988 4215 - antisense lncRNA gene leucine rich repeat containing 8D, opposite strand
Tssr47749 5 105816657 to 105816663 6 + TSS region transcription start site region 47749
D830014E11Rik 5 105826560 to 105832437 5877 + unclassified gene RIKEN cDNA D830014E11 gene
Tssr47750 5 105843763 to 105843764 1 + TSS region transcription start site region 47750
Gm10359 5 105862701 to 105863702 1001 - pseudogene predicted gene 10359
Gm43818 5 105866361 to 105866826 465 + pseudogene predicted gene 43818
1700061D13Rik 5 105866372 to 105866777 405 unclassified gene RIKEN cDNA 1700061D13 gene
Tssr47751 5 105876220 to 105876222 2 + TSS region transcription start site region 47751
Cpgi16157 5 105876261 to 105877413 1152 CpG island CpG island 16157
Tssr47752 5 105876532 to 105876585 53 + TSS region transcription start site region 47752
Zfp326 5 105876568 to 105915818 39250 + protein coding gene zinc finger protein 326
Gm43817 5 105879583 to 105881844 2261 + unclassified gene predicted gene 43817
4632409D06Rik 5 105958667 to 105961431 2764 unclassified gene RIKEN cDNA 4632409D06 gene
Gm19566 5 105980573 to 105981182 609 - pseudogene predicted gene, 19566
Cpgi16158 5 106038224 to 106038550 326 CpG island CpG island 16158
Gm25672 5 106072327 to 106072433 106 - snRNA gene predicted gene, 25672
Gm32736 5 106095091 to 106103547 8456 + lincRNA gene predicted gene, 32736
Cpgi16159 5 106181864 to 106182119 255 CpG island CpG island 16159
Gm5987 5 106215651 to 106216801 1150 + pseudogene predicted gene 5987
Gm38433 5 106272238 to 106272871 633 + pseudogene predicted gene, 38433
Tssr47753 5 106294152 to 106294159 7 + TSS region transcription start site region 47753
Gm32973 5 106295339 to 106322494 27155 - lncRNA gene predicted gene, 32973
Gm32921 5 106321340 to 106323217 1877 + lincRNA gene predicted gene, 32921
Tssr47754 5 106351507 to 106351521 14 + TSS region transcription start site region 47754
Tssr47755 5 106351528 to 106351552 24 + TSS region transcription start site region 47755
4930458A03Rik 5 106351535 to 106364234 12699 + lincRNA gene RIKEN cDNA 4930458A03 gene
Tssr1576 5 106351566 to 106351573 7 + TSS region transcription start site region 1576
Cpgi16160 5 106353715 to 106353909 194 CpG island CpG island 16160
Gm42915 5 106355362 to 106355684 322 - pseudogene predicted gene 42915