Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:105645091-106553547

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr52323 5 105651067 to 105651070 3 - TSS region transcription start site region 52323
Gm32276 5 105651306 to 105662431 11125 + lncRNA gene predicted gene, 32276
Tssr47719 5 105651322 to 105651362 40 + TSS region transcription start site region 47719
Tssr47720 5 105684346 to 105684361 15 + TSS region transcription start site region 47720
Tssr52324 5 105693396 to 105693439 43 - TSS region transcription start site region 52324
Gm42166 5 105693704 to 105704716 11012 - protein coding gene predicted gene, 42166
Tssr52325 5 105693976 to 105693999 23 - TSS region transcription start site region 52325
Tssr1572 5 105696131 to 105696144 13 - TSS region transcription start site region 1572
Tssr52326 5 105696154 to 105696179 25 - TSS region transcription start site region 52326
Tssr47721 5 105696290 to 105696301 11 + TSS region transcription start site region 47721
Tssr47722 5 105698899 to 105698920 21 + TSS region transcription start site region 47722
Tssr52327 5 105699242 to 105699250 8 - TSS region transcription start site region 52327
Cpgi16155 5 105699299 to 105700963 1664 CpG island CpG island 16155
Tssr47723 5 105699945 to 105700041 96 + TSS region transcription start site region 47723
Lrrc8d 5 105699969 to 105815215 115246 + protein coding gene leucine rich repeat containing 8D
Tssr47724 5 105700214 to 105700223 9 + TSS region transcription start site region 47724
Tssr52328 5 105700568 to 105700585 17 - TSS region transcription start site region 52328
Tssr52329 5 105700665 to 105700698 33 - TSS region transcription start site region 52329
Tssr47725 5 105700740 to 105700752 12 + TSS region transcription start site region 47725
Tssr47726 5 105700758 to 105700835 77 + TSS region transcription start site region 47726
Tssr47727 5 105700838 to 105700871 33 + TSS region transcription start site region 47727
Tssr47728 5 105700882 to 105700893 11 + TSS region transcription start site region 47728
Tssr47729 5 105700902 to 105700914 12 + TSS region transcription start site region 47729
Tssr47730 5 105701410 to 105701416 6 + TSS region transcription start site region 47730
Tssr52330 5 105701529 to 105701569 40 - TSS region transcription start site region 52330
Tssr52331 5 105702005 to 105702012 7 - TSS region transcription start site region 52331
Tssr52332 5 105702038 to 105702045 7 - TSS region transcription start site region 52332
Tssr47731 5 105702151 to 105702189 38 + TSS region transcription start site region 47731
Tssr1573 5 105702702 to 105702738 36 - TSS region transcription start site region 1573
Tssr52333 5 105718225 to 105718236 11 - TSS region transcription start site region 52333
Tssr52334 5 105718267 to 105718274 7 - TSS region transcription start site region 52334
Tssr47732 5 105718658 to 105718697 39 + TSS region transcription start site region 47732
Tssr52335 5 105720633 to 105720665 32 - TSS region transcription start site region 52335
Tssr52336 5 105731153 to 105731168 15 - TSS region transcription start site region 52336
Tssr47733 5 105731629 to 105731639 10 + TSS region transcription start site region 47733
Tssr47734 5 105731689 to 105731700 11 + TSS region transcription start site region 47734
Tssr47735 5 105731701 to 105731708 7 + TSS region transcription start site region 47735
Tssr47736 5 105731734 to 105731752 18 + TSS region transcription start site region 47736
Tssr47737 5 105731755 to 105731798 43 + TSS region transcription start site region 47737
Tssr47738 5 105731829 to 105731847 18 + TSS region transcription start site region 47738
Cpgi16156 5 105731850 to 105732578 728 CpG island CpG island 16156
Tssr1574 5 105731851 to 105731873 22 + TSS region transcription start site region 1574
Tssr47739 5 105731877 to 105731888 11 + TSS region transcription start site region 47739
Tssr47740 5 105731891 to 105731909 18 + TSS region transcription start site region 47740
Tssr47741 5 105732082 to 105732111 29 + TSS region transcription start site region 47741
Tssr47742 5 105732217 to 105732259 42 + TSS region transcription start site region 47742
Tssr47743 5 105734510 to 105734530 20 + TSS region transcription start site region 47743
Tssr47744 5 105741589 to 105741598 9 + TSS region transcription start site region 47744
Tssr47745 5 105741863 to 105741870 7 + TSS region transcription start site region 47745
Tssr47746 5 105763896 to 105763911 15 + TSS region transcription start site region 47746
Tssr47747 5 105767282 to 105767326 44 + TSS region transcription start site region 47747
Tssr47748 5 105793615 to 105793652 37 + TSS region transcription start site region 47748
Rps15a-ps5 5 105797321 to 105797713 392 - pseudogene ribosomal protein S15A, pseudogene 5
Tssr52337 5 105800372 to 105800407 35 - TSS region transcription start site region 52337
Tssr1575 5 105800607 to 105800632 25 + TSS region transcription start site region 1575
D5Mit403 5 105804571 to 105804714 143 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 403
Lrrc8dos 5 105814773 to 105818988 4215 - antisense lncRNA gene leucine rich repeat containing 8D, opposite strand
Tssr47749 5 105816657 to 105816663 6 + TSS region transcription start site region 47749
D830014E11Rik 5 105826560 to 105832437 5877 + unclassified gene RIKEN cDNA D830014E11 gene
Tssr47750 5 105843763 to 105843764 1 + TSS region transcription start site region 47750
Gm10359 5 105862701 to 105863702 1001 - pseudogene predicted gene 10359
Gm43818 5 105866361 to 105866826 465 + pseudogene predicted gene 43818
1700061D13Rik 5 105866372 to 105866777 405 unclassified gene RIKEN cDNA 1700061D13 gene
Tssr47751 5 105876220 to 105876222 2 + TSS region transcription start site region 47751
Cpgi16157 5 105876261 to 105877413 1152 CpG island CpG island 16157
Tssr47752 5 105876532 to 105876585 53 + TSS region transcription start site region 47752
Zfp326 5 105876568 to 105915818 39250 + protein coding gene zinc finger protein 326
Gm43817 5 105879583 to 105881844 2261 + unclassified gene predicted gene 43817
4632409D06Rik 5 105958667 to 105961431 2764 unclassified gene RIKEN cDNA 4632409D06 gene
Gm19566 5 105980573 to 105981182 609 - pseudogene predicted gene, 19566
Cpgi16158 5 106038224 to 106038550 326 CpG island CpG island 16158
Gm25672 5 106072327 to 106072433 106 - snRNA gene predicted gene, 25672
Gm32736 5 106095091 to 106103547 8456 + lincRNA gene predicted gene, 32736
Cpgi16159 5 106181864 to 106182119 255 CpG island CpG island 16159
Gm5987 5 106215651 to 106216801 1150 + pseudogene predicted gene 5987
Gm38433 5 106272238 to 106272871 633 + pseudogene predicted gene, 38433
Tssr47753 5 106294152 to 106294159 7 + TSS region transcription start site region 47753
Gm32973 5 106295339 to 106322494 27155 - lncRNA gene predicted gene, 32973
Gm32921 5 106321340 to 106323217 1877 + lincRNA gene predicted gene, 32921
Tssr47754 5 106351507 to 106351521 14 + TSS region transcription start site region 47754
Tssr47755 5 106351528 to 106351552 24 + TSS region transcription start site region 47755
4930458A03Rik 5 106351535 to 106364234 12699 + lincRNA gene RIKEN cDNA 4930458A03 gene
Tssr1576 5 106351566 to 106351573 7 + TSS region transcription start site region 1576
Cpgi16160 5 106353715 to 106353909 194 CpG island CpG island 16160
Gm42915 5 106355362 to 106355684 322 - pseudogene predicted gene 42915
Cpgi16161 5 106363706 to 106363979 273 CpG island CpG island 16161
4930432H08Rik 5 106364561 to 106366849 2288 - lincRNA gene RIKEN cDNA 4930432H08 gene
Gm42916 5 106369012 to 106370818 1806 + lincRNA gene predicted gene 42916
Tssr1577 5 106445296 to 106445298 2 - TSS region transcription start site region 1577
Cpgi16162 5 106448173 to 106448712 539 CpG island CpG island 16162
Cpgi16163 5 106451806 to 106452250 444 CpG island CpG island 16163
Barhl2 5 106452523 to 106458166 5643 - protein coding gene BarH like homeobox 2
D5Mit1002 5 106452954 to 106453103 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1002
Cpgi16164 5 106453262 to 106453927 665 CpG island CpG island 16164
Cpgi16165 5 106457057 to 106459644 2587 CpG island CpG island 16165
Tssr52338 5 106457943 to 106457954 11 - TSS region transcription start site region 52338
Tssr52339 5 106458409 to 106458418 9 - TSS region transcription start site region 52339
Tssr52340 5 106458455 to 106458470 15 - TSS region transcription start site region 52340
Tssr52341 5 106458477 to 106458496 19 - TSS region transcription start site region 52341
Gm33151 5 106458586 to 106459739 1153 + lncRNA gene predicted gene, 33151
Tssr47756 5 106458679 to 106458701 22 + TSS region transcription start site region 47756
Cpgi16166 5 106460054 to 106460572 518 CpG island CpG island 16166
Cpgi16167 5 106463652 to 106464100 448 CpG island CpG island 16167
Cpgi16168 5 106465109 to 106465337 228 CpG island CpG island 16168
Cpgi16169 5 106465605 to 106466087 482 CpG island CpG island 16169
Gm26872 5 106465800 to 106471007 5207 - lincRNA gene predicted gene, 26872
Cpgi16170 5 106467320 to 106467631 311 CpG island CpG island 16170
Cpgi16171 5 106469555 to 106469857 302 CpG island CpG island 16171
Cpgi16172 5 106470488 to 106471093 605 CpG island CpG island 16172
Gm28050 5 106500893 to 106515981 15088 - lincRNA gene predicted gene, 28050
Gm33283 5 106519878 to 106528821 8943 + lncRNA gene predicted gene, 33283