Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:10539662-14899696

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm4959 5 10558353 to 10559396 1043 + pseudogene predicted gene 4959
D5Mit70 5 10560429 to 10560548 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 70
Cpgi15546 5 10634921 to 10635114 193 CpG island CpG island 15546
Gm42828 5 10668075 to 10668543 468 - pseudogene predicted gene 42828
Gm42834 5 10706909 to 10707164 255 - pseudogene predicted gene 42834
Tssr1421 5 10709027 to 10709029 2 + TSS region transcription start site region 1421
Gm42833 5 10741052 to 10743175 2123 - unclassified gene predicted gene 42833
Gm6455 5 10865029 to 10870808 5779 + lincRNA gene predicted gene 6455
Gm32266 5 10873002 to 10920903 47901 - lncRNA gene predicted gene, 32266
Gm3321 5 10875636 to 10876729 1093 + pseudogene predicted gene 3321
Gm43358 5 10931568 to 10946522 14954 - lincRNA gene predicted gene 43358
Gm8857 5 10947807 to 10952592 4785 + protein coding gene predicted gene 8857
Gm8861 5 10957406 to 10958237 831 + pseudogene predicted gene 8861
Gm43492 5 11022260 to 11038939 16679 - lincRNA gene predicted gene 43492
Gm8871 5 11039979 to 11044936 4957 + protein coding gene predicted pseudogene 8871
Gm8874 5 11050460 to 11050745 285 + pseudogene predicted gene 8874
4930558F17Rik 5 11109800 to 11126455 16655 - lincRNA gene RIKEN cDNA 4930558F17 gene
Gm8879 5 11127634 to 11132487 4853 + protein coding gene predicted gene 8879
Gm3360 5 11137279 to 11138387 1108 + pseudogene predicted gene 3360
Gm32554 5 11165537 to 11181825 16288 - lincRNA gene predicted gene, 32554
Tssr50121 5 11177432 to 11177436 4 - TSS region transcription start site region 50121
Gm5861 5 11183072 to 11187810 4738 + protein coding gene predicted gene 5861
Gm4047 5 11190194 to 11222014 31820 lncRNA gene predicted gene 4047
Gm29743 5 11192475 to 11193593 1118 + pseudogene predicted gene, 29743
Gm33093 5 11238536 to 11254753 16217 - lincRNA gene predicted gene, 33093
Gm8890 5 11256033 to 11260494 4461 + protein coding gene predicted gene 8890
Gm8891 5 11265590 to 11266421 831 + pseudogene predicted gene 8891
Gm32877 5 11320804 to 11340297 19493 - lincRNA gene predicted gene, 32877
Speer1 5 11341516 to 11346286 4770 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 1
Gm8896 5 11351104 to 11352209 1105 + pseudogene predicted gene 8896
1700108N06Rik 5 11400212 to 11415204 14992 - lincRNA gene RIKEN cDNA 1700108N06 gene
Gm8897 5 11416418 to 11421235 4817 + protein coding gene predicted gene 8897
Gm29745 5 11426453 to 11427139 686 + pseudogene predicted gene, 29745
Gm43540 5 11460424 to 11464271 3847 + pseudogene predicted gene 43540
4930437M23Rik 5 11485335 to 11501452 16117 - lincRNA gene RIKEN cDNA 4930437M23 gene
Gm8906 5 11502685 to 11507417 4732 + protein coding gene predicted gene 8906
Gm21040 5 11512247 to 11513355 1108 + pseudogene predicted gene, 21040
Gm43640 5 11577108 to 11593779 16671 - lincRNA gene predicted gene 43640
Gm6460 5 11594956 to 11599480 4524 + protein coding gene predicted gene 6460
Gm8920 5 11604671 to 11605594 923 + pseudogene predicted gene 8920
Gm33847 5 11664167 to 11680740 16573 - lincRNA gene predicted gene, 33847
Gm8922 5 11681959 to 11686856 4897 + protein coding gene predicted gene 8922
Gm8924 5 11691659 to 11692790 1131 + pseudogene predicted gene 8924
1700003C15Rik 5 11749833 to 11769308 19475 - lincRNA gene RIKEN cDNA 1700003C15 gene
Gm8926 5 11770548 to 11775300 4752 + protein coding gene predicted gene 8926
Gm8929 5 11780123 to 11781228 1105 + pseudogene predicted gene 8929
Gm43132 5 11828046 to 11844359 16313 - lincRNA gene predicted gene 43132
Gm6465 5 11845539 to 11850352 4813 + protein coding gene predicted gene 6465
Gm29755 5 11855234 to 11856181 947 + pseudogene predicted gene, 29755
Gm34493 5 11894629 to 11898228 3599 - lncRNA gene predicted gene, 34493
Gm43131 5 11900483 to 11916836 16353 - lincRNA gene predicted gene 43131
4933402N22Rik 5 11918043 to 11922804 4761 + protein coding gene RIKEN cDNA 4933402N22 gene
Gm5288 5 11927622 to 11928718 1096 + pseudogene predicted gene 5288
Gm29066 5 12089537 to 12097647 8110 + lincRNA gene predicted gene 29066
Gm38242 5 12092020 to 12099441 7421 - unclassified gene predicted gene, 38242
Gm42910 5 12142041 to 12144961 2920 - unclassified gene predicted gene 42910
Gm8953 5 12354680 to 12355375 695 - pseudogene predicted gene 8953
Tssr50122 5 12355771 to 12355780 9 - TSS region transcription start site region 50122
Gmmq8 5 12371157 to 12371157 0 QTL gastrocnemius muscle mass QTL 8
Tssr45165 5 12374655 to 12374670 15 + TSS region transcription start site region 45165
Tssr45166 5 12383156 to 12383177 21 + TSS region transcription start site region 45166
Cpgi15547 5 12383193 to 12384026 833 CpG island CpG island 15547
Tssr45167 5 12383300 to 12383322 22 + TSS region transcription start site region 45167
Tssr45168 5 12383325 to 12383336 11 + TSS region transcription start site region 45168
Tssr45169 5 12383341 to 12383351 10 + TSS region transcription start site region 45169
Tssr45170 5 12383377 to 12383395 18 + TSS region transcription start site region 45170
Sema3d 5 12383385 to 12588948 205563 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Tssr45171 5 12383483 to 12383543 60 + TSS region transcription start site region 45171
Tssr45172 5 12466874 to 12466879 5 + TSS region transcription start site region 45172
Gm8925 5 12478866 to 12479628 762 - pseudogene predicted gene 8925
Gm42909 5 12554632 to 12558250 3618 + unclassified gene predicted gene 42909
Gm42580 5 12669155 to 12670728 1573 - pseudogene predicted gene 42580
Tssr1422 5 12719662 to 12719696 34 + TSS region transcription start site region 1422
Tssr45173 5 12719819 to 12719867 48 + TSS region transcription start site region 45173
Cpgi15548 5 12928834 to 12929155 321 CpG island CpG island 15548
Gm23243 5 12940370 to 12940479 109 + miRNA gene predicted gene, 23243
Gm10481 5 13042433 to 13043434 1001 - pseudogene predicted gene 10481
Gm6641 5 13080828 to 13082142 1314 + pseudogene predicted gene 6641
Gm10108 5 13121448 to 13121766 318 - pseudogene predicted pseudogene 10108
Sema3a 5 13125414 to 13602565 477151 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
Tssr45174 5 13125458 to 13125470 12 + TSS region transcription start site region 45174
Tssr45175 5 13125474 to 13125512 38 + TSS region transcription start site region 45175
Tssr45176 5 13125513 to 13125537 24 + TSS region transcription start site region 45176
Tssr45177 5 13125558 to 13125575 17 + TSS region transcription start site region 45177
Tssr45178 5 13125585 to 13125610 25 + TSS region transcription start site region 45178
Tssr45179 5 13125613 to 13125635 22 + TSS region transcription start site region 45179
Gm42680 5 13133459 to 13135958 2499 - unclassified gene predicted gene 42680
Tssr45180 5 13398680 to 13398696 16 + TSS region transcription start site region 45180
Tssr45181 5 13398704 to 13398726 22 + TSS region transcription start site region 45181
Tssr45182 5 13398828 to 13398871 43 + TSS region transcription start site region 45182
Cpgi15549 5 13398978 to 13399582 604 CpG island CpG island 15549
Tssr45183 5 13399325 to 13399382 57 + TSS region transcription start site region 45183
Tssr45184 5 13399387 to 13399415 28 + TSS region transcription start site region 45184
Tssr45185 5 13399495 to 13399519 24 + TSS region transcription start site region 45185
Tssr45186 5 13399751 to 13399765 14 + TSS region transcription start site region 45186
Gm43130 5 13481028 to 13484934 3906 + unclassified gene predicted gene 43130
Gm42676 5 13525723 to 13528408 2685 + unclassified gene predicted gene 42676
Gm42675 5 13548694 to 13552728 4034 + unclassified gene predicted gene 42675
Tssr1423 5 13587486 to 13587489 3 + TSS region transcription start site region 1423
Gm43719 5 13604035 to 13606233 2198 + unclassified gene predicted gene 43719
Gm43718 5 13615959 to 13617815 1856 - unclassified gene predicted gene 43718
Gm4751 5 13763618 to 13764722 1104 + pseudogene predicted gene 4751
Gm6647 5 13768662 to 13771887 3225 + pseudogene predicted gene 6647
4930568A13Rik 5 13774326 to 13808284 33958 - lincRNA gene RIKEN cDNA 4930568A13 gene
Speer3 5 13791619 to 13796819 5200 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 3
Gm6650 5 13811242 to 13814452 3210 + pseudogene predicted gene 6650
Gm8968 5 13838233 to 13839535 1302 - pseudogene predicted gene 8968
Gm35702 5 13877166 to 13877676 510 + pseudogene predicted gene, 35702
Dnd1-ps 5 13879219 to 13880182 963 + pseudogene DND microRNA-mediated repression inhibitor 1, pseudogene
Cpgi15550 5 13879369 to 13879723 354 CpG island CpG island 15550
Gm24054 5 13902770 to 13902874 104 - miRNA gene predicted gene, 24054
Cpgi15551 5 14025162 to 14025768 606 CpG island CpG island 15551
Tssr45187 5 14025267 to 14025291 24 + TSS region transcription start site region 45187
Sema3e 5 14025276 to 14256689 231413 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
Tssr45188 5 14025305 to 14025327 22 + TSS region transcription start site region 45188
Tssr45189 5 14025338 to 14025373 35 + TSS region transcription start site region 45189
Tssr45190 5 14025416 to 14025472 56 + TSS region transcription start site region 45190
Tssr45191 5 14025474 to 14025488 14 + TSS region transcription start site region 45191
Tssr45192 5 14025593 to 14025604 11 + TSS region transcription start site region 45192
Tssr45193 5 14025609 to 14025625 16 + TSS region transcription start site region 45193
Gm43519 5 14027894 to 14029765 1871 + unclassified gene predicted gene 43519
Tssr45194 5 14027915 to 14027920 5 + TSS region transcription start site region 45194
Tssr45195 5 14032733 to 14032734 1 + TSS region transcription start site region 45195
Gm4128 5 14056438 to 14074157 17719 - antisense lncRNA gene predicted gene 4128
Tssr45196 5 14144446 to 14144450 4 + TSS region transcription start site region 45196
Gm43523 5 14242462 to 14245339 2877 + unclassified gene predicted gene 43523
Cpgi15552 5 14514609 to 14515718 1109 CpG island CpG island 15552
Pclo 5 14514918 to 14863459 348541 + protein coding gene piccolo (presynaptic cytomatrix protein)
Tssr45197 5 14514929 to 14514951 22 + TSS region transcription start site region 45197
Tssr45198 5 14514952 to 14514991 39 + TSS region transcription start site region 45198
Tssr45199 5 14514995 to 14514996 1 + TSS region transcription start site region 45199
Tssr45200 5 14515002 to 14515018 16 + TSS region transcription start site region 45200
Gm26918 5 14520673 to 14539852 19179 - antisense lncRNA gene predicted gene, 26918
Tssr45201 5 14520897 to 14520908 11 + TSS region transcription start site region 45201
Tssr45202 5 14521603 to 14521615 12 + TSS region transcription start site region 45202
Tssr45203 5 14521703 to 14521719 16 + TSS region transcription start site region 45203
Gm42446 5 14563338 to 14566621 3283 + unclassified gene predicted gene 42446
Gm42447 5 14596864 to 14599766 2902 + unclassified gene predicted gene 42447
Gm42448 5 14599919 to 14602562 2643 + unclassified gene predicted gene 42448
Gm42444 5 14604049 to 14608606 4557 + unclassified gene predicted gene 42444
Gm42445 5 14611652 to 14614544 2892 + unclassified gene predicted gene 42445
Gm43663 5 14665649 to 14667153 1504 + unclassified gene predicted gene 43663
Tssr45204 5 14669026 to 14669039 13 + TSS region transcription start site region 45204
Tssr45205 5 14669052 to 14669086 34 + TSS region transcription start site region 45205
Tssr45206 5 14677450 to 14677452 2 + TSS region transcription start site region 45206
Tssr45207 5 14684954 to 14684958 4 + TSS region transcription start site region 45207
Tssr50123 5 14692959 to 14692960 1 - TSS region transcription start site region 50123
Gm26954 5 14696985 to 14723664 26679 - antisense lncRNA gene predicted gene, 26954
Tssr50124 5 14723666 to 14723679 13 - TSS region transcription start site region 50124
Tssr50125 5 14723681 to 14723698 17 - TSS region transcription start site region 50125
Tssr50126 5 14723699 to 14723704 5 - TSS region transcription start site region 50126
Tssr50127 5 14723708 to 14723721 13 - TSS region transcription start site region 50127
Tssr50128 5 14723731 to 14723740 9 - TSS region transcription start site region 50128
Gm43662 5 14778932 to 14781202 2270 + unclassified gene predicted gene 43662
Gm18668 5 14783234 to 14784377 1143 + pseudogene predicted gene, 18668
Gm43665 5 14804901 to 14806559 1658 + unclassified gene predicted gene 43665