Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:105308704-106089716

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gbp11 5 105323042 to 105346472 23430 - polymorphic pseudogene guanylate binding protein 11
Tssr52313 5 105328957 to 105328962 5 - TSS region transcription start site region 52313
Tssr52314 5 105339050 to 105339065 15 - TSS region transcription start site region 52314
Tssr52315 5 105343242 to 105343251 9 - TSS region transcription start site region 52315
Tssr52316 5 105345927 to 105345932 5 - TSS region transcription start site region 52316
Tssr52317 5 105346479 to 105346489 10 - TSS region transcription start site region 52317
Tssr52318 5 105346519 to 105346548 29 - TSS region transcription start site region 52318
B230204H03Rik 5 105398905 to 105400155 1250 unclassified gene RIKEN cDNA B230204H03 gene
Tssr52319 5 105400103 to 105400114 11 - TSS region transcription start site region 52319
Tssr47675 5 105400408 to 105400418 10 + TSS region transcription start site region 47675
Gm26519 5 105401245 to 105406970 5725 + lincRNA gene predicted gene, 26519
Tssr47676 5 105409341 to 105409373 32 + TSS region transcription start site region 47676
Gm32051 5 105409348 to 105413922 4574 + lincRNA gene predicted gene, 32051
4930542N06Rik 5 105413286 to 105415307 2021 - lncRNA gene RIKEN cDNA 4930542N06 gene
Cpgi16151 5 105415218 to 105416501 1283 CpG island CpG island 16151
Tssr52320 5 105415687 to 105415704 17 - TSS region transcription start site region 52320
Tssr47677 5 105415690 to 105415730 40 + TSS region transcription start site region 47677
Tssr52321 5 105415718 to 105415729 11 - TSS region transcription start site region 52321
Tssr47678 5 105415738 to 105415849 111 + TSS region transcription start site region 47678
Lrrc8b 5 105415775 to 105490071 74296 + protein coding gene leucine rich repeat containing 8 family, member B
Tssr47679 5 105446871 to 105446896 25 + TSS region transcription start site region 47679
Cpgi16152 5 105479957 to 105481375 1418 CpG island CpG island 16152
Tssr47680 5 105481579 to 105481592 13 + TSS region transcription start site region 47680
Cpgi16153 5 105495231 to 105495392 161 CpG island CpG island 16153
Gm42141 5 105495422 to 105496929 1507 + lncRNA gene predicted gene, 42141
Tssr47681 5 105495455 to 105495475 20 + TSS region transcription start site region 47681
Tssr47682 5 105495540 to 105495546 6 + TSS region transcription start site region 47682
Tssr47683 5 105495599 to 105495608 9 + TSS region transcription start site region 47683
Tssr47684 5 105495620 to 105495631 11 + TSS region transcription start site region 47684
Tssr47685 5 105499619 to 105499623 4 + TSS region transcription start site region 47685
Gm42144 5 105501878 to 105504817 2939 + lncRNA gene predicted gene, 42144
Gm42142 5 105502243 to 105509547 7304 - lncRNA gene predicted gene, 42142
Tssr47686 5 105518724 to 105518738 14 + TSS region transcription start site region 47686
Cpgi16154 5 105518728 to 105520130 1402 CpG island CpG island 16154
Tssr47687 5 105518746 to 105518757 11 + TSS region transcription start site region 47687
Tssr47688 5 105518962 to 105519023 61 + TSS region transcription start site region 47688
Tssr47689 5 105519051 to 105519068 17 + TSS region transcription start site region 47689
Tssr47690 5 105519082 to 105519095 13 + TSS region transcription start site region 47690
Lrrc8c 5 105519388 to 105613018 93630 + protein coding gene leucine rich repeat containing 8 family, member C
Tssr47691 5 105519404 to 105519425 21 + TSS region transcription start site region 47691
Tssr47692 5 105519434 to 105519472 38 + TSS region transcription start site region 47692
Tssr47693 5 105519509 to 105519512 3 + TSS region transcription start site region 47693
Tssr47694 5 105531618 to 105531638 20 + TSS region transcription start site region 47694
Tssr47695 5 105558859 to 105558891 32 + TSS region transcription start site region 47695
Tssr47696 5 105560266 to 105560279 13 + TSS region transcription start site region 47696
Tssr47697 5 105571268 to 105571272 4 + TSS region transcription start site region 47697
Tssr47698 5 105579484 to 105579503 19 + TSS region transcription start site region 47698
Tssr47699 5 105579525 to 105579533 8 + TSS region transcription start site region 47699
Tssr47700 5 105579535 to 105579561 26 + TSS region transcription start site region 47700
Tssr47701 5 105579567 to 105579577 10 + TSS region transcription start site region 47701
C230066G23Rik 5 105580440 to 105581772 1332 + sense intronic lncRNA gene RIKEN cDNA C230066G23 gene
Tssr47702 5 105589792 to 105589794 2 + TSS region transcription start site region 47702
Tssr47703 5 105591215 to 105591240 25 + TSS region transcription start site region 47703
Tssr47704 5 105591292 to 105591300 8 + TSS region transcription start site region 47704
Tssr47705 5 105591302 to 105591334 32 + TSS region transcription start site region 47705
Tssr47706 5 105591348 to 105591375 27 + TSS region transcription start site region 47706
Tssr47707 5 105591441 to 105591508 67 + TSS region transcription start site region 47707
Tssr47708 5 105591640 to 105591651 11 + TSS region transcription start site region 47708
Tssr47709 5 105596092 to 105596121 29 + TSS region transcription start site region 47709
Tssr47710 5 105599555 to 105599586 31 + TSS region transcription start site region 47710
Tssr47711 5 105599616 to 105599621 5 + TSS region transcription start site region 47711
Tssr47712 5 105606576 to 105606591 15 + TSS region transcription start site region 47712
Tssr47713 5 105607347 to 105607372 25 + TSS region transcription start site region 47713
Tssr47714 5 105608374 to 105608390 16 + TSS region transcription start site region 47714
Tssr47715 5 105609402 to 105609413 11 + TSS region transcription start site region 47715
Tssr47716 5 105610318 to 105610323 5 + TSS region transcription start site region 47716
Tssr47717 5 105610968 to 105610972 4 + TSS region transcription start site region 47717
Tssr47718 5 105621037 to 105621046 9 + TSS region transcription start site region 47718
Gm32230 5 105640112 to 105643799 3687 - lncRNA gene predicted gene, 32230
Tssr52322 5 105642682 to 105642697 15 - TSS region transcription start site region 52322
Tssr52323 5 105651067 to 105651070 3 - TSS region transcription start site region 52323
Gm32276 5 105651306 to 105662431 11125 + lncRNA gene predicted gene, 32276
Tssr47719 5 105651322 to 105651362 40 + TSS region transcription start site region 47719
Tssr47720 5 105684346 to 105684361 15 + TSS region transcription start site region 47720
Tssr52324 5 105693396 to 105693439 43 - TSS region transcription start site region 52324
Gm42166 5 105693704 to 105704716 11012 - protein coding gene predicted gene, 42166
Tssr52325 5 105693976 to 105693999 23 - TSS region transcription start site region 52325
Tssr1572 5 105696131 to 105696144 13 - TSS region transcription start site region 1572
Tssr52326 5 105696154 to 105696179 25 - TSS region transcription start site region 52326
Tssr47721 5 105696290 to 105696301 11 + TSS region transcription start site region 47721
Tssr47722 5 105698899 to 105698920 21 + TSS region transcription start site region 47722
Tssr52327 5 105699242 to 105699250 8 - TSS region transcription start site region 52327
Cpgi16155 5 105699299 to 105700963 1664 CpG island CpG island 16155
Tssr47723 5 105699945 to 105700041 96 + TSS region transcription start site region 47723
Lrrc8d 5 105699969 to 105815215 115246 + protein coding gene leucine rich repeat containing 8D
Tssr47724 5 105700214 to 105700223 9 + TSS region transcription start site region 47724
Tssr52328 5 105700568 to 105700585 17 - TSS region transcription start site region 52328
Tssr52329 5 105700665 to 105700698 33 - TSS region transcription start site region 52329
Tssr47725 5 105700740 to 105700752 12 + TSS region transcription start site region 47725
Tssr47726 5 105700758 to 105700835 77 + TSS region transcription start site region 47726
Tssr47727 5 105700838 to 105700871 33 + TSS region transcription start site region 47727
Tssr47728 5 105700882 to 105700893 11 + TSS region transcription start site region 47728
Tssr47729 5 105700902 to 105700914 12 + TSS region transcription start site region 47729
Tssr47730 5 105701410 to 105701416 6 + TSS region transcription start site region 47730
Tssr52330 5 105701529 to 105701569 40 - TSS region transcription start site region 52330
Tssr52331 5 105702005 to 105702012 7 - TSS region transcription start site region 52331
Tssr52332 5 105702038 to 105702045 7 - TSS region transcription start site region 52332
Tssr47731 5 105702151 to 105702189 38 + TSS region transcription start site region 47731
Tssr1573 5 105702702 to 105702738 36 - TSS region transcription start site region 1573
Tssr52333 5 105718225 to 105718236 11 - TSS region transcription start site region 52333
Tssr52334 5 105718267 to 105718274 7 - TSS region transcription start site region 52334
Tssr47732 5 105718658 to 105718697 39 + TSS region transcription start site region 47732
Tssr52335 5 105720633 to 105720665 32 - TSS region transcription start site region 52335
Tssr52336 5 105731153 to 105731168 15 - TSS region transcription start site region 52336
Tssr47733 5 105731629 to 105731639 10 + TSS region transcription start site region 47733
Tssr47734 5 105731689 to 105731700 11 + TSS region transcription start site region 47734
Tssr47735 5 105731701 to 105731708 7 + TSS region transcription start site region 47735
Tssr47736 5 105731734 to 105731752 18 + TSS region transcription start site region 47736
Tssr47737 5 105731755 to 105731798 43 + TSS region transcription start site region 47737
Tssr47738 5 105731829 to 105731847 18 + TSS region transcription start site region 47738
Cpgi16156 5 105731850 to 105732578 728 CpG island CpG island 16156
Tssr1574 5 105731851 to 105731873 22 + TSS region transcription start site region 1574
Tssr47739 5 105731877 to 105731888 11 + TSS region transcription start site region 47739
Tssr47740 5 105731891 to 105731909 18 + TSS region transcription start site region 47740
Tssr47741 5 105732082 to 105732111 29 + TSS region transcription start site region 47741
Tssr47742 5 105732217 to 105732259 42 + TSS region transcription start site region 47742
Tssr47743 5 105734510 to 105734530 20 + TSS region transcription start site region 47743
Tssr47744 5 105741589 to 105741598 9 + TSS region transcription start site region 47744
Tssr47745 5 105741863 to 105741870 7 + TSS region transcription start site region 47745
Tssr47746 5 105763896 to 105763911 15 + TSS region transcription start site region 47746
Tssr47747 5 105767282 to 105767326 44 + TSS region transcription start site region 47747
Tssr47748 5 105793615 to 105793652 37 + TSS region transcription start site region 47748
Rps15a-ps5 5 105797321 to 105797713 392 - pseudogene ribosomal protein S15A, pseudogene 5
Tssr52337 5 105800372 to 105800407 35 - TSS region transcription start site region 52337
Tssr1575 5 105800607 to 105800632 25 + TSS region transcription start site region 1575
D5Mit403 5 105804571 to 105804714 143 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 403
Lrrc8dos 5 105814773 to 105818988 4215 - antisense lncRNA gene leucine rich repeat containing 8D, opposite strand
Tssr47749 5 105816657 to 105816663 6 + TSS region transcription start site region 47749
D830014E11Rik 5 105826560 to 105832437 5877 + unclassified gene RIKEN cDNA D830014E11 gene
Tssr47750 5 105843763 to 105843764 1 + TSS region transcription start site region 47750
Gm10359 5 105862701 to 105863702 1001 - pseudogene predicted gene 10359
Gm43818 5 105866361 to 105866826 465 + pseudogene predicted gene 43818
1700061D13Rik 5 105866372 to 105866777 405 unclassified gene RIKEN cDNA 1700061D13 gene
Tssr47751 5 105876220 to 105876222 2 + TSS region transcription start site region 47751
Cpgi16157 5 105876261 to 105877413 1152 CpG island CpG island 16157
Tssr47752 5 105876532 to 105876585 53 + TSS region transcription start site region 47752
Zfp326 5 105876568 to 105915818 39250 + protein coding gene zinc finger protein 326
Gm43817 5 105879583 to 105881844 2261 + unclassified gene predicted gene 43817
4632409D06Rik 5 105958667 to 105961431 2764 unclassified gene RIKEN cDNA 4632409D06 gene
Gm19566 5 105980573 to 105981182 609 - pseudogene predicted gene, 19566
Cpgi16158 5 106038224 to 106038550 326 CpG island CpG island 16158
Gm25672 5 106072327 to 106072433 106 - snRNA gene predicted gene, 25672