Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:104322954-108583103

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677 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mepe 5 104325329 to 104338611 13282 + protein coding gene matrix extracellular phosphoglycoprotein with ASARM motif (bone)
Tssr47632 5 104325360 to 104325368 8 + TSS region transcription start site region 47632
Tssr47633 5 104349134 to 104349145 11 + TSS region transcription start site region 47633
Diht 5 104350872 to 114963481 10612609 QTL dopamine-induced hypothermia
D5Mit41 5 104350872 to 104351018 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 41
Tssr52221 5 104358732 to 104358742 10 - TSS region transcription start site region 52221
Tssr47634 5 104384769 to 104384791 22 + TSS region transcription start site region 47634
Tssr47635 5 104434298 to 104434337 39 + TSS region transcription start site region 47635
Tssr47636 5 104434410 to 104434422 12 + TSS region transcription start site region 47636
Tssr47637 5 104434524 to 104434552 28 + TSS region transcription start site region 47637
Tssr47638 5 104434705 to 104434739 34 + TSS region transcription start site region 47638
Tssr47639 5 104435112 to 104435128 16 + TSS region transcription start site region 47639
Spp1 5 104435118 to 104441050 5932 + protein coding gene secreted phosphoprotein 1
Gm42793 5 104435121 to 104436372 1251 + unclassified gene predicted gene 42793
D5Mit115.3 5 104435731 to 104435853 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 115.3
Bbaa26 5 104435822 to 138557193 34121371 QTL B.burgdorferi-associated arthritis 26
D5Mit115 5 104435822 to 104435953 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 115
Tssr47640 5 104436368 to 104436387 19 + TSS region transcription start site region 47640
Tssr47641 5 104436535 to 104436549 14 + TSS region transcription start site region 47641
Tssr47642 5 104437645 to 104437656 11 + TSS region transcription start site region 47642
Tssr47643 5 104439255 to 104439293 38 + TSS region transcription start site region 47643
Tssr47644 5 104439294 to 104439311 17 + TSS region transcription start site region 47644
Tssr47645 5 104439312 to 104439377 65 + TSS region transcription start site region 47645
Tssr47646 5 104439395 to 104439494 99 + TSS region transcription start site region 47646
Tssr47647 5 104439498 to 104439519 21 + TSS region transcription start site region 47647
Tssr47648 5 104440217 to 104440227 10 + TSS region transcription start site region 47648
Tssr1569 5 104440227 to 104440258 31 + TSS region transcription start site region 1569
Tssr47649 5 104440263 to 104440318 55 + TSS region transcription start site region 47649
Tssr47650 5 104440335 to 104440387 52 + TSS region transcription start site region 47650
Tssr47651 5 104440389 to 104440418 29 + TSS region transcription start site region 47651
Tssr52222 5 104440421 to 104440448 27 - TSS region transcription start site region 52222
Tssr52223 5 104440459 to 104440576 117 - TSS region transcription start site region 52223
Tssr47652 5 104440494 to 104440527 33 + TSS region transcription start site region 47652
Tssr47653 5 104440571 to 104440576 5 + TSS region transcription start site region 47653
Tssr47654 5 104440578 to 104440588 10 + TSS region transcription start site region 47654
Tssr47655 5 104440590 to 104440609 19 + TSS region transcription start site region 47655
Tssr52224 5 104440615 to 104440642 27 - TSS region transcription start site region 52224
Tssr47656 5 104440621 to 104440632 11 + TSS region transcription start site region 47656
Tssr47657 5 104440676 to 104440703 27 + TSS region transcription start site region 47657
Tssr47658 5 104440708 to 104440720 12 + TSS region transcription start site region 47658
Tssr47659 5 104440755 to 104440772 17 + TSS region transcription start site region 47659
Tssr47660 5 104440774 to 104440789 15 + TSS region transcription start site region 47660
Tssr52225 5 104441041 to 104441052 11 - TSS region transcription start site region 52225
Cpgi16147 5 104459297 to 104460483 1186 CpG island CpG island 16147
Pkd2 5 104459450 to 104505819 46369 + protein coding gene polycystic kidney disease 2
Tssr47661 5 104459539 to 104459580 41 + TSS region transcription start site region 47661
Tssr47662 5 104459589 to 104459610 21 + TSS region transcription start site region 47662
Tssr47663 5 104459621 to 104459642 21 + TSS region transcription start site region 47663
Tssr47664 5 104459643 to 104459654 11 + TSS region transcription start site region 47664
Tssr52226 5 104460255 to 104460279 24 - TSS region transcription start site region 52226
Tssr52227 5 104460329 to 104460355 26 - TSS region transcription start site region 52227
Tssr52228 5 104460362 to 104460383 21 - TSS region transcription start site region 52228
Cpgi16148 5 104478825 to 104479169 344 CpG island CpG island 16148
Cpgi16149 5 104508192 to 104508939 747 CpG island CpG island 16149
Tssr47665 5 104508338 to 104508392 54 + TSS region transcription start site region 47665
BC005561 5 104508352 to 104522383 14031 + protein coding gene cDNA sequence BC005561
Tssr47666 5 104508398 to 104508410 12 + TSS region transcription start site region 47666
Tssr47667 5 104508572 to 104508575 3 + TSS region transcription start site region 47667
D930016D06Rik 5 104525735 to 104554207 28472 + lincRNA gene RIKEN cDNA D930016D06 gene
Zfp33b 5 104570778 to 104639143 68365 + protein coding gene zinc finger protein 33B
Tssr1570 5 104571390 to 104571391 1 + TSS region transcription start site region 1570
Tssr47668 5 104571665 to 104571694 29 + TSS region transcription start site region 47668
Gm46930 5 104583369 to 104584102 733 - pseudogene predicted gene, 46930
Gm45931 5 104601536 to 104602062 526 - pseudogene predicted gene, 45931
Tssr47669 5 104609390 to 104609436 46 + TSS region transcription start site region 47669
Gm31345 5 104647147 to 104647689 542 - pseudogene predicted gene, 31345
Gm20385 5 104661551 to 104692067 30516 + protein coding gene predicted gene, 20385
Tssr47670 5 104662335 to 104662349 14 + TSS region transcription start site region 47670
Gm3196 5 104704370 to 104752481 48111 - pseudogene predicted gene 3196
D5Mit365 5 104717529 to 104717627 98 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 365
D5Mit365.2 5 104717599 to 104717725 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 365.2
Gm31526 5 104722968 to 104751226 28258 + protein coding gene predicted gene, 31526
Gm19949 5 104756764 to 104757287 523 - pseudogene predicted gene, 19949
Gm8258 5 104775779 to 104777227 1448 + pseudogene predicted gene 8258
Zfp951 5 104813169 to 104860070 46901 - protein coding gene zinc finger protein 951
Tssr52229 5 104859791 to 104859805 14 - TSS region transcription start site region 52229
Gm45932 5 104874869 to 104875385 516 + pseudogene predicted gene, 45932
Gm29714 5 104879585 to 104880386 801 + pseudogene predicted gene, 29714
Gm29716 5 104882670 to 104934952 52282 - protein coding gene predicted gene, 29716
Cpgi16150 5 104927732 to 104928575 843 CpG island CpG island 16150
Abcg3 5 104935057 to 104982718 47661 - protein coding gene ATP binding cassette subfamily G member 3
Gm24097 5 104936651 to 104936757 106 + snRNA gene predicted gene, 24097
Gm43856 5 104971695 to 104972063 368 - unclassified gene predicted gene 43856
Tssr52230 5 104982656 to 104982714 58 - TSS region transcription start site region 52230
Gm43855 5 104987237 to 104987743 506 - pseudogene predicted gene 43855
Gm5870 5 104989050 to 104989331 281 - pseudogene predicted pseudogene 5870
Tssr52231 5 104989349 to 104989371 22 - TSS region transcription start site region 52231
Gbp8 5 105012513 to 105053609 41096 - protein coding gene guanylate-binding protein 8
Tssr52232 5 105021896 to 105021909 13 - TSS region transcription start site region 52232
Tssr52233 5 105030699 to 105030711 12 - TSS region transcription start site region 52233
Gbp9 5 105076464 to 105110352 33888 - protein coding gene guanylate-binding protein 9
Tssr52234 5 105078514 to 105078544 30 - TSS region transcription start site region 52234
Tssr52235 5 105082750 to 105082783 33 - TSS region transcription start site region 52235
Tssr52236 5 105083763 to 105083806 43 - TSS region transcription start site region 52236
Tssr52237 5 105101615 to 105101626 11 - TSS region transcription start site region 52237
Tssr52238 5 105102229 to 105102233 4 - TSS region transcription start site region 52238
Tssr52239 5 105103840 to 105103842 2 - TSS region transcription start site region 52239
Tssr52240 5 105109432 to 105109435 3 - TSS region transcription start site region 52240
Tssr52241 5 105110064 to 105110082 18 - TSS region transcription start site region 52241
Gbp4 5 105115767 to 105139586 23819 - protein coding gene guanylate binding protein 4
Tssr52242 5 105116690 to 105116700 10 - TSS region transcription start site region 52242
Tssr52243 5 105116751 to 105116763 12 - TSS region transcription start site region 52243
Tssr52244 5 105116770 to 105116801 31 - TSS region transcription start site region 52244
Tssr52245 5 105116806 to 105116822 16 - TSS region transcription start site region 52245
Tssr52246 5 105116848 to 105116856 8 - TSS region transcription start site region 52246
Tssr52247 5 105116893 to 105116894 1 - TSS region transcription start site region 52247
Tssr52248 5 105117635 to 105117647 12 - TSS region transcription start site region 52248
Tssr52249 5 105117719 to 105117734 15 - TSS region transcription start site region 52249
Tssr52250 5 105117919 to 105117929 10 - TSS region transcription start site region 52250
Tssr52251 5 105118009 to 105118016 7 - TSS region transcription start site region 52251
Tssr52252 5 105118088 to 105118095 7 - TSS region transcription start site region 52252
Tssr52253 5 105118317 to 105118326 9 - TSS region transcription start site region 52253
Tssr52254 5 105118350 to 105118361 11 - TSS region transcription start site region 52254
Tssr52255 5 105118447 to 105118457 10 - TSS region transcription start site region 52255
Tssr52256 5 105119978 to 105120011 33 - TSS region transcription start site region 52256
Tssr52257 5 105120953 to 105120983 30 - TSS region transcription start site region 52257
Tssr52258 5 105121108 to 105121120 12 - TSS region transcription start site region 52258
Tssr52259 5 105121132 to 105121143 11 - TSS region transcription start site region 52259
Tssr52260 5 105121192 to 105121236 44 - TSS region transcription start site region 52260
Tssr52261 5 105121842 to 105121866 24 - TSS region transcription start site region 52261
Tssr52262 5 105122939 to 105122954 15 - TSS region transcription start site region 52262
Tssr52263 5 105123154 to 105123158 4 - TSS region transcription start site region 52263
Tssr52264 5 105124982 to 105125015 33 - TSS region transcription start site region 52264
Tssr47671 5 105125510 to 105125544 34 + TSS region transcription start site region 47671
Tssr52265 5 105126713 to 105126716 3 - TSS region transcription start site region 52265
Tssr52266 5 105126867 to 105126878 11 - TSS region transcription start site region 52266
Tssr52267 5 105131327 to 105131332 5 - TSS region transcription start site region 52267
Tssr52268 5 105131372 to 105131386 14 - TSS region transcription start site region 52268
Tssr52269 5 105131434 to 105131461 27 - TSS region transcription start site region 52269
Tssr52270 5 105131615 to 105131623 8 - TSS region transcription start site region 52270
Tssr52271 5 105131738 to 105131741 3 - TSS region transcription start site region 52271
Tssr1571 5 105131772 to 105131786 14 - TSS region transcription start site region 1571
Tssr52272 5 105131797 to 105131804 7 - TSS region transcription start site region 52272
Tssr52273 5 105131867 to 105131882 15 - TSS region transcription start site region 52273
Tssr52274 5 105131895 to 105131913 18 - TSS region transcription start site region 52274
Tssr52275 5 105131915 to 105131938 23 - TSS region transcription start site region 52275
Tssr52276 5 105131944 to 105131972 28 - TSS region transcription start site region 52276
Tssr52277 5 105131974 to 105131988 14 - TSS region transcription start site region 52277
Tssr52278 5 105131996 to 105132015 19 - TSS region transcription start site region 52278
Tssr52279 5 105132062 to 105132077 15 - TSS region transcription start site region 52279
Tssr52280 5 105132111 to 105132128 17 - TSS region transcription start site region 52280
Tssr52281 5 105132141 to 105132159 18 - TSS region transcription start site region 52281
Tssr52282 5 105132171 to 105132176 5 - TSS region transcription start site region 52282
Tssr52283 5 105132249 to 105132262 13 - TSS region transcription start site region 52283
Tssr52284 5 105132308 to 105132319 11 - TSS region transcription start site region 52284
Tssr52285 5 105132342 to 105132351 9 - TSS region transcription start site region 52285
Tssr52286 5 105132355 to 105132381 26 - TSS region transcription start site region 52286
Tssr52287 5 105132384 to 105132396 12 - TSS region transcription start site region 52287
Tssr52288 5 105132401 to 105132410 9 - TSS region transcription start site region 52288
Tssr52289 5 105132481 to 105132490 9 - TSS region transcription start site region 52289
Tssr52290 5 105132588 to 105132597 9 - TSS region transcription start site region 52290
Tssr52291 5 105132928 to 105132939 11 - TSS region transcription start site region 52291
Tssr52292 5 105133407 to 105133419 12 - TSS region transcription start site region 52292
Tssr52293 5 105133577 to 105133601 24 - TSS region transcription start site region 52293
Tssr52294 5 105133674 to 105133692 18 - TSS region transcription start site region 52294
Tssr52295 5 105133992 to 105134003 11 - TSS region transcription start site region 52295
Tssr52296 5 105134614 to 105134617 3 - TSS region transcription start site region 52296
Tssr52297 5 105134692 to 105134706 14 - TSS region transcription start site region 52297
Tssr52298 5 105134785 to 105134795 10 - TSS region transcription start site region 52298
Tssr52299 5 105136087 to 105136108 21 - TSS region transcription start site region 52299
Tssr52300 5 105136146 to 105136152 6 - TSS region transcription start site region 52300
Tssr52301 5 105136159 to 105136166 7 - TSS region transcription start site region 52301
Tssr52302 5 105136174 to 105136206 32 - TSS region transcription start site region 52302
Tssr52303 5 105136327 to 105136342 15 - TSS region transcription start site region 52303
Tssr52304 5 105136828 to 105136849 21 - TSS region transcription start site region 52304
Tssr52305 5 105138614 to 105138642 28 - TSS region transcription start site region 52305
Gm9640 5 105157840 to 105182283 24443 - pseudogene predicted gene 9640
Tssr47672 5 105198387 to 105198410 23 + TSS region transcription start site region 47672
Tssr47673 5 105198417 to 105198431 14 + TSS region transcription start site region 47673
Gm31785 5 105198431 to 105218368 19937 + lncRNA gene predicted gene, 31785
Gm43302 5 105214907 to 105293695 78788 - protein coding gene predicted gene 43302
Gbp10 5 105215699 to 105239533 23834 - protein coding gene guanylate-binding protein 10
Tssr52306 5 105235425 to 105235430 5 - TSS region transcription start site region 52306
Tssr52307 5 105239540 to 105239545 5 - TSS region transcription start site region 52307
Gbp6 5 105270702 to 105293698 22996 - protein coding gene guanylate binding protein 6
Tssr47674 5 105274179 to 105274224 45 + TSS region transcription start site region 47674
Tssr52308 5 105281787 to 105281797 10 - TSS region transcription start site region 52308
Tssr52309 5 105288074 to 105288093 19 - TSS region transcription start site region 52309
Tssr52310 5 105293688 to 105293705 17 - TSS region transcription start site region 52310
Tssr52311 5 105293727 to 105293780 53 - TSS region transcription start site region 52311
Tssr52312 5 105294064 to 105294102 38 - TSS region transcription start site region 52312
Gbp11 5 105323042 to 105346472 23430 - polymorphic pseudogene guanylate binding protein 11
Tssr52313 5 105328957 to 105328962 5 - TSS region transcription start site region 52313
Tssr52314 5 105339050 to 105339065 15 - TSS region transcription start site region 52314
Tssr52315 5 105343242 to 105343251 9 - TSS region transcription start site region 52315
Tssr52316 5 105345927 to 105345932 5 - TSS region transcription start site region 52316
Tssr52317 5 105346479 to 105346489 10 - TSS region transcription start site region 52317
Tssr52318 5 105346519 to 105346548 29 - TSS region transcription start site region 52318
B230204H03Rik 5 105398905 to 105400155 1250 unclassified gene RIKEN cDNA B230204H03 gene
Tssr52319 5 105400103 to 105400114 11 - TSS region transcription start site region 52319
Tssr47675 5 105400408 to 105400418 10 + TSS region transcription start site region 47675
Gm26519 5 105401245 to 105406970 5725 + lincRNA gene predicted gene, 26519
Tssr47676 5 105409341 to 105409373 32 + TSS region transcription start site region 47676
Gm32051 5 105409348 to 105413922 4574 + lincRNA gene predicted gene, 32051
4930542N06Rik 5 105413286 to 105415307 2021 - lncRNA gene RIKEN cDNA 4930542N06 gene
Cpgi16151 5 105415218 to 105416501 1283 CpG island CpG island 16151
Tssr52320 5 105415687 to 105415704 17 - TSS region transcription start site region 52320
Tssr47677 5 105415690 to 105415730 40 + TSS region transcription start site region 47677
Tssr52321 5 105415718 to 105415729 11 - TSS region transcription start site region 52321
Tssr47678 5 105415738 to 105415849 111 + TSS region transcription start site region 47678