Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:104284450-104680819

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm23616 5 104297188 to 104297297 109 + miRNA gene predicted gene, 23616
Tssr47627 5 104299281 to 104299296 15 + TSS region transcription start site region 47627
Ibsp 5 104299287 to 104311472 12185 + protein coding gene integrin binding sialoprotein
Tssr47628 5 104302450 to 104302462 12 + TSS region transcription start site region 47628
Tssr47629 5 104309311 to 104309322 11 + TSS region transcription start site region 47629
Tssr47630 5 104309327 to 104309346 19 + TSS region transcription start site region 47630
Tssr47631 5 104309365 to 104309400 35 + TSS region transcription start site region 47631
Tssr52219 5 104310076 to 104310098 22 - TSS region transcription start site region 52219
Cpgi16146 5 104310082 to 104310497 415 CpG island CpG island 16146
Tssr52220 5 104310113 to 104310136 23 - TSS region transcription start site region 52220
Mepe 5 104325329 to 104338611 13282 + protein coding gene matrix extracellular phosphoglycoprotein with ASARM motif (bone)
Tssr47632 5 104325360 to 104325368 8 + TSS region transcription start site region 47632
Tssr47633 5 104349134 to 104349145 11 + TSS region transcription start site region 47633
Diht 5 104350872 to 114963481 10612609 QTL dopamine-induced hypothermia
D5Mit41 5 104350872 to 104351018 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 41
Tssr52221 5 104358732 to 104358742 10 - TSS region transcription start site region 52221
Tssr47634 5 104384769 to 104384791 22 + TSS region transcription start site region 47634
Tssr47635 5 104434298 to 104434337 39 + TSS region transcription start site region 47635
Tssr47636 5 104434410 to 104434422 12 + TSS region transcription start site region 47636
Tssr47637 5 104434524 to 104434552 28 + TSS region transcription start site region 47637
Tssr47638 5 104434705 to 104434739 34 + TSS region transcription start site region 47638
Tssr47639 5 104435112 to 104435128 16 + TSS region transcription start site region 47639
Spp1 5 104435118 to 104441050 5932 + protein coding gene secreted phosphoprotein 1
Gm42793 5 104435121 to 104436372 1251 + unclassified gene predicted gene 42793
D5Mit115.3 5 104435731 to 104435853 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 115.3
D5Mit115 5 104435822 to 104435953 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 115
Bbaa26 5 104435822 to 138557193 34121371 QTL B.burgdorferi-associated arthritis 26
Tssr47640 5 104436368 to 104436387 19 + TSS region transcription start site region 47640
Tssr47641 5 104436535 to 104436549 14 + TSS region transcription start site region 47641
Tssr47642 5 104437645 to 104437656 11 + TSS region transcription start site region 47642
Tssr47643 5 104439255 to 104439293 38 + TSS region transcription start site region 47643
Tssr47644 5 104439294 to 104439311 17 + TSS region transcription start site region 47644
Tssr47645 5 104439312 to 104439377 65 + TSS region transcription start site region 47645
Tssr47646 5 104439395 to 104439494 99 + TSS region transcription start site region 47646
Tssr47647 5 104439498 to 104439519 21 + TSS region transcription start site region 47647
Tssr47648 5 104440217 to 104440227 10 + TSS region transcription start site region 47648
Tssr1569 5 104440227 to 104440258 31 + TSS region transcription start site region 1569
Tssr47649 5 104440263 to 104440318 55 + TSS region transcription start site region 47649
Tssr47650 5 104440335 to 104440387 52 + TSS region transcription start site region 47650
Tssr47651 5 104440389 to 104440418 29 + TSS region transcription start site region 47651
Tssr52222 5 104440421 to 104440448 27 - TSS region transcription start site region 52222
Tssr52223 5 104440459 to 104440576 117 - TSS region transcription start site region 52223
Tssr47652 5 104440494 to 104440527 33 + TSS region transcription start site region 47652
Tssr47653 5 104440571 to 104440576 5 + TSS region transcription start site region 47653
Tssr47654 5 104440578 to 104440588 10 + TSS region transcription start site region 47654
Tssr47655 5 104440590 to 104440609 19 + TSS region transcription start site region 47655
Tssr52224 5 104440615 to 104440642 27 - TSS region transcription start site region 52224
Tssr47656 5 104440621 to 104440632 11 + TSS region transcription start site region 47656
Tssr47657 5 104440676 to 104440703 27 + TSS region transcription start site region 47657
Tssr47658 5 104440708 to 104440720 12 + TSS region transcription start site region 47658
Tssr47659 5 104440755 to 104440772 17 + TSS region transcription start site region 47659
Tssr47660 5 104440774 to 104440789 15 + TSS region transcription start site region 47660
Tssr52225 5 104441041 to 104441052 11 - TSS region transcription start site region 52225
Cpgi16147 5 104459297 to 104460483 1186 CpG island CpG island 16147
Pkd2 5 104459450 to 104505819 46369 + protein coding gene polycystic kidney disease 2
Tssr47661 5 104459539 to 104459580 41 + TSS region transcription start site region 47661
Tssr47662 5 104459589 to 104459610 21 + TSS region transcription start site region 47662
Tssr47663 5 104459621 to 104459642 21 + TSS region transcription start site region 47663
Tssr47664 5 104459643 to 104459654 11 + TSS region transcription start site region 47664
Tssr52226 5 104460255 to 104460279 24 - TSS region transcription start site region 52226
Tssr52227 5 104460329 to 104460355 26 - TSS region transcription start site region 52227
Tssr52228 5 104460362 to 104460383 21 - TSS region transcription start site region 52228
Cpgi16148 5 104478825 to 104479169 344 CpG island CpG island 16148
Cpgi16149 5 104508192 to 104508939 747 CpG island CpG island 16149
Tssr47665 5 104508338 to 104508392 54 + TSS region transcription start site region 47665
BC005561 5 104508352 to 104522383 14031 + protein coding gene cDNA sequence BC005561
Tssr47666 5 104508398 to 104508410 12 + TSS region transcription start site region 47666
Tssr47667 5 104508572 to 104508575 3 + TSS region transcription start site region 47667
D930016D06Rik 5 104525735 to 104554207 28472 + lincRNA gene RIKEN cDNA D930016D06 gene
Zfp33b 5 104570778 to 104639143 68365 + protein coding gene zinc finger protein 33B
Tssr1570 5 104571390 to 104571391 1 + TSS region transcription start site region 1570
Tssr47668 5 104571665 to 104571694 29 + TSS region transcription start site region 47668
Gm46930 5 104583369 to 104584102 733 - pseudogene predicted gene, 46930
Gm45931 5 104601536 to 104602062 526 - pseudogene predicted gene, 45931
Tssr47669 5 104609390 to 104609436 46 + TSS region transcription start site region 47669
Gm31345 5 104647147 to 104647689 542 - pseudogene predicted gene, 31345
Gm20385 5 104661551 to 104692067 30516 + protein coding gene predicted gene, 20385
Tssr47670 5 104662335 to 104662349 14 + TSS region transcription start site region 47670