Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 5:104070712-104280127

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65 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm17660 5 104070064 to 104077608 7544 - protein coding gene predicted gene, 17660
Gm43333 5 104070064 to 104072325 2261 - unclassified gene predicted gene 43333
Tssr52189 5 104072911 to 104072920 9 - TSS region transcription start site region 52189
Sparcl1 5 104079111 to 104113733 34622 - protein coding gene SPARC-like 1
Tssr52190 5 104089681 to 104089693 12 - TSS region transcription start site region 52190
Cpgi16143 5 104092404 to 104092599 195 CpG island CpG island 16143
Tssr52191 5 104092465 to 104092486 21 - TSS region transcription start site region 52191
Tssr52192 5 104092871 to 104092882 11 - TSS region transcription start site region 52192
Tssr1561 5 104092884 to 104092936 52 + TSS region transcription start site region 1561
Tssr52193 5 104092888 to 104092902 14 - TSS region transcription start site region 52193
Tssr52194 5 104092920 to 104092963 43 - TSS region transcription start site region 52194
Tssr47623 5 104092945 to 104093059 114 + TSS region transcription start site region 47623
Tssr52195 5 104093000 to 104093010 10 - TSS region transcription start site region 52195
Tssr52196 5 104093013 to 104093033 20 - TSS region transcription start site region 52196
Tssr52197 5 104093035 to 104093055 20 - TSS region transcription start site region 52197
Tssr52198 5 104093064 to 104093107 43 - TSS region transcription start site region 52198
Tssr52199 5 104093113 to 104093140 27 - TSS region transcription start site region 52199
Tssr52200 5 104093141 to 104093180 39 - TSS region transcription start site region 52200
Tssr52201 5 104093198 to 104093209 11 - TSS region transcription start site region 52201
Tssr52202 5 104093222 to 104093243 21 - TSS region transcription start site region 52202
Tssr52203 5 104093244 to 104093266 22 - TSS region transcription start site region 52203
Tssr52204 5 104093283 to 104093293 10 - TSS region transcription start site region 52204
Tssr52205 5 104093304 to 104093320 16 - TSS region transcription start site region 52205
Tssr52206 5 104093333 to 104093350 17 - TSS region transcription start site region 52206
Tssr52207 5 104093363 to 104093377 14 - TSS region transcription start site region 52207
Tssr1562 5 104094631 to 104094666 35 + TSS region transcription start site region 1562
Tssr52208 5 104094670 to 104094687 17 - TSS region transcription start site region 52208
Tssr52209 5 104094694 to 104094712 18 - TSS region transcription start site region 52209
Tssr52210 5 104097742 to 104097775 33 - TSS region transcription start site region 52210
Tssr1563 5 104108480 to 104108485 5 + TSS region transcription start site region 1563
Gm26703 5 104109217 to 104119687 10470 + lncRNA gene predicted gene, 26703
Tssr52211 5 104113420 to 104113435 15 - TSS region transcription start site region 52211
Tssr52212 5 104113449 to 104113472 23 - TSS region transcription start site region 52212
Tssr52213 5 104113568 to 104113579 11 - TSS region transcription start site region 52213
Tssr52214 5 104113588 to 104113599 11 - TSS region transcription start site region 52214
Tssr52215 5 104113690 to 104113738 48 - TSS region transcription start site region 52215
Tssr52216 5 104113740 to 104113756 16 - TSS region transcription start site region 52216
Tssr52217 5 104113777 to 104113788 11 - TSS region transcription start site region 52217
Tssr1564 5 104113875 to 104113902 27 - TSS region transcription start site region 1564
Tssr1565 5 104113929 to 104113943 14 - TSS region transcription start site region 1565
Tssr1566 5 104113949 to 104113964 15 - TSS region transcription start site region 1566
Tssr1567 5 104114021 to 104114037 16 - TSS region transcription start site region 1567
Tssr1568 5 104114069 to 104114099 30 - TSS region transcription start site region 1568
Tssr47624 5 104114157 to 104114163 6 + TSS region transcription start site region 47624
Cpgi16144 5 104119375 to 104119650 275 CpG island CpG island 16144
Tssr52218 5 104133977 to 104133979 2 - TSS region transcription start site region 52218
D5Mit363 5 104139201 to 104139450 249 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 363
Gm3157 5 104144554 to 104146300 1746 - pseudogene predicted gene 3157
Tssr47625 5 104170676 to 104170699 23 + TSS region transcription start site region 47625
Dspp 5 104170712 to 104180127 9415 + protein coding gene dentin sialophosphoprotein
Sccor3 5 104200000 to 114600000 10400000 QTL synaptonemal complex length to mean MLH1 count ratio 3
Tssr47626 5 104202609 to 104202624 15 + TSS region transcription start site region 47626
Dmp1 5 104202613 to 104214102 11489 + protein coding gene dentin matrix protein 1
Cpgi16145 5 104211657 to 104212354 697 CpG island CpG island 16145
Vng 5 104239005 to 126924008 22685003 heritable phenotypic marker van gogh
Sluc33 5 104239005 to 120573921 16334916 QTL susceptibility to lung cancer 33
Drb2 5 104239005 to 104239199 194 QTL dopamine receptor binding 2
D5Mit10 5 104239005 to 104239199 194 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 10
Cpfd3 5 104239005 to 104239199 194 QTL cerebellum pattern fissures, declival 3
Chldq12 5 104239005 to 104239199 194 QTL cholesterol and HDL QTL 12
Bwem1 5 104239005 to 104239199 194 QTL body weight day 30 males 1
Ahl18 5 104239005 to 104239199 194 QTL age related hearing loss, early onset 18
Tir5 5 104239199 to 63548099 -40691100 QTL trypanosome infection response 5
Gm31048 5 104239313 to 104246702 7389 - lncRNA gene predicted gene, 31048
D5Mit400 5 104241870 to 104242043 173 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 400