Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:103924539-104994580

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16140 5 103927624 to 103927845 221 CpG island CpG island 16140
Hsd17b13 5 103955442 to 103977388 21946 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 13
Tssr52173 5 103967041 to 103967046 5 - TSS region transcription start site region 52173
Tssr52174 5 103970842 to 103970848 6 - TSS region transcription start site region 52174
Tssr52175 5 103977339 to 103977356 17 - TSS region transcription start site region 52175
Tssr52176 5 103977360 to 103977403 43 - TSS region transcription start site region 52176
Tssr52177 5 103977404 to 103977415 11 - TSS region transcription start site region 52177
Tssr47615 5 103982931 to 103982935 4 + TSS region transcription start site region 47615
Gm8200 5 103989370 to 103989591 221 + pseudogene predicted gene 8200
Hsd17b11 5 103989765 to 104021796 32031 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 11
Tssr52178 5 103990238 to 103990243 5 - TSS region transcription start site region 52178
D5Mit275 5 103997680 to 103997803 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 275
Tssr52179 5 104017765 to 104017791 26 - TSS region transcription start site region 52179
Tssr52180 5 104018396 to 104018406 10 - TSS region transcription start site region 52180
Tssr52181 5 104018431 to 104018434 3 - TSS region transcription start site region 52181
Cpgi16141 5 104021497 to 104022142 645 CpG island CpG island 16141
Tssr52182 5 104021779 to 104021796 17 - TSS region transcription start site region 52182
Tssr52183 5 104021799 to 104021865 66 - TSS region transcription start site region 52183
Tssr52184 5 104021928 to 104021945 17 - TSS region transcription start site region 52184
Tssr52185 5 104021948 to 104021967 19 - TSS region transcription start site region 52185
Tssr52186 5 104022114 to 104022129 15 - TSS region transcription start site region 52186
Tssr52187 5 104022131 to 104022186 55 - TSS region transcription start site region 52187
Tssr52188 5 104022190 to 104022210 20 - TSS region transcription start site region 52188
Gm43545 5 104044619 to 104047397 2778 - unclassified gene predicted gene 43545
Cpgi16142 5 104046419 to 104047552 1133 CpG island CpG island 16142
Nudt9 5 104046518 to 104065378 18860 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 9
Tssr47616 5 104046532 to 104046561 29 + TSS region transcription start site region 47616
Tssr47617 5 104046788 to 104046810 22 + TSS region transcription start site region 47617
Tssr47618 5 104046881 to 104046899 18 + TSS region transcription start site region 47618
Tssr47619 5 104046907 to 104046914 7 + TSS region transcription start site region 47619
Tssr47620 5 104046918 to 104046975 57 + TSS region transcription start site region 47620
Tssr47621 5 104046980 to 104047044 64 + TSS region transcription start site region 47621
Tssr47622 5 104047064 to 104047073 9 + TSS region transcription start site region 47622
Mir5619 5 104048003 to 104048063 60 + miRNA gene microRNA 5619
Gm43333 5 104070064 to 104072325 2261 - unclassified gene predicted gene 43333
Gm17660 5 104070064 to 104077608 7544 - protein coding gene predicted gene, 17660
Tssr52189 5 104072911 to 104072920 9 - TSS region transcription start site region 52189
Sparcl1 5 104079111 to 104113733 34622 - protein coding gene SPARC-like 1
Tssr52190 5 104089681 to 104089693 12 - TSS region transcription start site region 52190
Cpgi16143 5 104092404 to 104092599 195 CpG island CpG island 16143
Tssr52191 5 104092465 to 104092486 21 - TSS region transcription start site region 52191
Tssr52192 5 104092871 to 104092882 11 - TSS region transcription start site region 52192
Tssr1561 5 104092884 to 104092936 52 + TSS region transcription start site region 1561
Tssr52193 5 104092888 to 104092902 14 - TSS region transcription start site region 52193
Tssr52194 5 104092920 to 104092963 43 - TSS region transcription start site region 52194
Tssr47623 5 104092945 to 104093059 114 + TSS region transcription start site region 47623
Tssr52195 5 104093000 to 104093010 10 - TSS region transcription start site region 52195
Tssr52196 5 104093013 to 104093033 20 - TSS region transcription start site region 52196
Tssr52197 5 104093035 to 104093055 20 - TSS region transcription start site region 52197
Tssr52198 5 104093064 to 104093107 43 - TSS region transcription start site region 52198
Tssr52199 5 104093113 to 104093140 27 - TSS region transcription start site region 52199
Tssr52200 5 104093141 to 104093180 39 - TSS region transcription start site region 52200
Tssr52201 5 104093198 to 104093209 11 - TSS region transcription start site region 52201
Tssr52202 5 104093222 to 104093243 21 - TSS region transcription start site region 52202
Tssr52203 5 104093244 to 104093266 22 - TSS region transcription start site region 52203
Tssr52204 5 104093283 to 104093293 10 - TSS region transcription start site region 52204
Tssr52205 5 104093304 to 104093320 16 - TSS region transcription start site region 52205
Tssr52206 5 104093333 to 104093350 17 - TSS region transcription start site region 52206
Tssr52207 5 104093363 to 104093377 14 - TSS region transcription start site region 52207
Tssr1562 5 104094631 to 104094666 35 + TSS region transcription start site region 1562
Tssr52208 5 104094670 to 104094687 17 - TSS region transcription start site region 52208
Tssr52209 5 104094694 to 104094712 18 - TSS region transcription start site region 52209
Tssr52210 5 104097742 to 104097775 33 - TSS region transcription start site region 52210
Tssr1563 5 104108480 to 104108485 5 + TSS region transcription start site region 1563
Gm26703 5 104109217 to 104119687 10470 + antisense lncRNA gene predicted gene, 26703
Tssr52211 5 104113420 to 104113435 15 - TSS region transcription start site region 52211
Tssr52212 5 104113449 to 104113472 23 - TSS region transcription start site region 52212
Tssr52213 5 104113568 to 104113579 11 - TSS region transcription start site region 52213
Tssr52214 5 104113588 to 104113599 11 - TSS region transcription start site region 52214
Tssr52215 5 104113690 to 104113738 48 - TSS region transcription start site region 52215
Tssr52216 5 104113740 to 104113756 16 - TSS region transcription start site region 52216
Tssr52217 5 104113777 to 104113788 11 - TSS region transcription start site region 52217
Tssr1564 5 104113875 to 104113902 27 - TSS region transcription start site region 1564
Tssr1565 5 104113929 to 104113943 14 - TSS region transcription start site region 1565
Tssr1566 5 104113949 to 104113964 15 - TSS region transcription start site region 1566
Tssr1567 5 104114021 to 104114037 16 - TSS region transcription start site region 1567
Tssr1568 5 104114069 to 104114099 30 - TSS region transcription start site region 1568
Tssr47624 5 104114157 to 104114163 6 + TSS region transcription start site region 47624
Cpgi16144 5 104119375 to 104119650 275 CpG island CpG island 16144
Tssr52218 5 104133977 to 104133979 2 - TSS region transcription start site region 52218
D5Mit363 5 104139201 to 104139450 249 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 363
Gm3157 5 104144554 to 104146300 1746 - pseudogene predicted gene 3157
Tssr47625 5 104170676 to 104170699 23 + TSS region transcription start site region 47625
Dspp 5 104170712 to 104180127 9415 + protein coding gene dentin sialophosphoprotein
Tssr47626 5 104202609 to 104202624 15 + TSS region transcription start site region 47626
Dmp1 5 104202613 to 104214102 11489 + protein coding gene dentin matrix protein 1
Cpgi16145 5 104211657 to 104212354 697 CpG island CpG island 16145
Vng 5 104239005 to 126924008 22685003 heritable phenotypic marker van gogh
Ahl18 5 104239005 to 104239199 194 QTL age related hearing loss, early onset 18
Chldq12 5 104239005 to 104239199 194 QTL cholesterol and HDL QTL 12
Bwem1 5 104239005 to 104239199 194 QTL body weight day 30 males 1
Cpfd3 5 104239005 to 104239199 194 QTL cerebellum pattern fissures, declival 3
Drb2 5 104239005 to 104239199 194 QTL dopamine receptor binding 2
D5Mit10 5 104239005 to 104239199 194 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 10
Sluc33 5 104239005 to 120573921 16334916 QTL susceptibility to lung cancer 33
Tir5 5 104239199 to 63548099 -40691100 QTL trypanosome infection response 5
Gm31048 5 104239313 to 104246702 7389 - lincRNA gene predicted gene, 31048
D5Mit400 5 104241870 to 104242043 173 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 400
Gm23616 5 104297188 to 104297297 109 + miRNA gene predicted gene, 23616
Tssr47627 5 104299281 to 104299296 15 + TSS region transcription start site region 47627
Ibsp 5 104299287 to 104311472 12185 + protein coding gene integrin binding sialoprotein
Tssr47628 5 104302450 to 104302462 12 + TSS region transcription start site region 47628
Tssr47629 5 104309311 to 104309322 11 + TSS region transcription start site region 47629
Tssr47630 5 104309327 to 104309346 19 + TSS region transcription start site region 47630
Tssr47631 5 104309365 to 104309400 35 + TSS region transcription start site region 47631
Tssr52219 5 104310076 to 104310098 22 - TSS region transcription start site region 52219
Cpgi16146 5 104310082 to 104310497 415 CpG island CpG island 16146
Tssr52220 5 104310113 to 104310136 23 - TSS region transcription start site region 52220
Mepe 5 104325329 to 104338611 13282 + protein coding gene matrix extracellular phosphoglycoprotein with ASARM motif (bone)
Tssr47632 5 104325360 to 104325368 8 + TSS region transcription start site region 47632
Tssr47633 5 104349134 to 104349145 11 + TSS region transcription start site region 47633
D5Mit41 5 104350872 to 104351018 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 41
Diht 5 104350872 to 114963481 10612609 QTL dopamine-induced hypothermia
Tssr52221 5 104358732 to 104358742 10 - TSS region transcription start site region 52221
Tssr47634 5 104384769 to 104384791 22 + TSS region transcription start site region 47634
Tssr47635 5 104434298 to 104434337 39 + TSS region transcription start site region 47635
Tssr47636 5 104434410 to 104434422 12 + TSS region transcription start site region 47636
Tssr47637 5 104434524 to 104434552 28 + TSS region transcription start site region 47637
Tssr47638 5 104434705 to 104434739 34 + TSS region transcription start site region 47638
Tssr47639 5 104435112 to 104435128 16 + TSS region transcription start site region 47639
Spp1 5 104435118 to 104441050 5932 + protein coding gene secreted phosphoprotein 1
Gm42793 5 104435121 to 104436372 1251 + unclassified gene predicted gene 42793
D5Mit115.3 5 104435731 to 104435853 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 115.3
D5Mit115 5 104435822 to 104435953 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 115
Bbaa26 5 104435822 to 138557193 34121371 QTL B.burgdorferi-associated arthritis 26
Tssr47640 5 104436368 to 104436387 19 + TSS region transcription start site region 47640
Tssr47641 5 104436535 to 104436549 14 + TSS region transcription start site region 47641
Tssr47642 5 104437645 to 104437656 11 + TSS region transcription start site region 47642
Tssr47643 5 104439255 to 104439293 38 + TSS region transcription start site region 47643
Tssr47644 5 104439294 to 104439311 17 + TSS region transcription start site region 47644
Tssr47645 5 104439312 to 104439377 65 + TSS region transcription start site region 47645
Tssr47646 5 104439395 to 104439494 99 + TSS region transcription start site region 47646
Tssr47647 5 104439498 to 104439519 21 + TSS region transcription start site region 47647
Tssr47648 5 104440217 to 104440227 10 + TSS region transcription start site region 47648
Tssr1569 5 104440227 to 104440258 31 + TSS region transcription start site region 1569
Tssr47649 5 104440263 to 104440318 55 + TSS region transcription start site region 47649
Tssr47650 5 104440335 to 104440387 52 + TSS region transcription start site region 47650
Tssr47651 5 104440389 to 104440418 29 + TSS region transcription start site region 47651
Tssr52222 5 104440421 to 104440448 27 - TSS region transcription start site region 52222
Tssr52223 5 104440459 to 104440576 117 - TSS region transcription start site region 52223
Tssr47652 5 104440494 to 104440527 33 + TSS region transcription start site region 47652
Tssr47653 5 104440571 to 104440576 5 + TSS region transcription start site region 47653
Tssr47654 5 104440578 to 104440588 10 + TSS region transcription start site region 47654
Tssr47655 5 104440590 to 104440609 19 + TSS region transcription start site region 47655
Tssr52224 5 104440615 to 104440642 27 - TSS region transcription start site region 52224
Tssr47656 5 104440621 to 104440632 11 + TSS region transcription start site region 47656
Tssr47657 5 104440676 to 104440703 27 + TSS region transcription start site region 47657
Tssr47658 5 104440708 to 104440720 12 + TSS region transcription start site region 47658
Tssr47659 5 104440755 to 104440772 17 + TSS region transcription start site region 47659
Tssr47660 5 104440774 to 104440789 15 + TSS region transcription start site region 47660
Tssr52225 5 104441041 to 104441052 11 - TSS region transcription start site region 52225
Cpgi16147 5 104459297 to 104460483 1186 CpG island CpG island 16147
Pkd2 5 104459450 to 104505819 46369 + protein coding gene polycystic kidney disease 2
Tssr47661 5 104459539 to 104459580 41 + TSS region transcription start site region 47661
Tssr47662 5 104459589 to 104459610 21 + TSS region transcription start site region 47662
Tssr47663 5 104459621 to 104459642 21 + TSS region transcription start site region 47663
Tssr47664 5 104459643 to 104459654 11 + TSS region transcription start site region 47664
Tssr52226 5 104460255 to 104460279 24 - TSS region transcription start site region 52226
Tssr52227 5 104460329 to 104460355 26 - TSS region transcription start site region 52227
Tssr52228 5 104460362 to 104460383 21 - TSS region transcription start site region 52228
Cpgi16148 5 104478825 to 104479169 344 CpG island CpG island 16148
Cpgi16149 5 104508192 to 104508939 747 CpG island CpG island 16149
Tssr47665 5 104508338 to 104508392 54 + TSS region transcription start site region 47665
BC005561 5 104508352 to 104522383 14031 + protein coding gene cDNA sequence BC005561
Tssr47666 5 104508398 to 104508410 12 + TSS region transcription start site region 47666
Tssr47667 5 104508572 to 104508575 3 + TSS region transcription start site region 47667
D930016D06Rik 5 104525735 to 104554207 28472 + lincRNA gene RIKEN cDNA D930016D06 gene
Zfp33b 5 104570778 to 104639143 68365 + protein coding gene zinc finger protein 33B
Tssr1570 5 104571390 to 104571391 1 + TSS region transcription start site region 1570
Tssr47668 5 104571665 to 104571694 29 + TSS region transcription start site region 47668
Gm46930 5 104583369 to 104584102 733 - pseudogene predicted gene, 46930
Gm45931 5 104601536 to 104602062 526 - pseudogene predicted gene, 45931
Tssr47669 5 104609390 to 104609436 46 + TSS region transcription start site region 47669
Gm31345 5 104647147 to 104647689 542 - pseudogene predicted gene, 31345
Gm20385 5 104661551 to 104692067 30516 + protein coding gene predicted gene, 20385
Tssr47670 5 104662335 to 104662349 14 + TSS region transcription start site region 47670
Gm3196 5 104704370 to 104752481 48111 - pseudogene predicted gene 3196
D5Mit365 5 104717529 to 104717627 98 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 365
D5Mit365.2 5 104717599 to 104717725 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 365.2
Gm31526 5 104722968 to 104751226 28258 + protein coding gene predicted gene, 31526
Gm19949 5 104756764 to 104757287 523 - pseudogene predicted gene, 19949
Gm8258 5 104775779 to 104777227 1448 + pseudogene predicted gene 8258
Zfp951 5 104813169 to 104860070 46901 - protein coding gene zinc finger protein 951
Tssr52229 5 104859791 to 104859805 14 - TSS region transcription start site region 52229
Gm45932 5 104874869 to 104875385 516 + pseudogene predicted gene, 45932
Gm29714 5 104879585 to 104880386 801 + pseudogene predicted gene, 29714
Gm29716 5 104882670 to 104934952 52282 - protein coding gene predicted gene, 29716
Cpgi16150 5 104927732 to 104928575 843 CpG island CpG island 16150
Abcg3 5 104935057 to 104982718 47661 - protein coding gene ATP binding cassette subfamily G member 3
Gm24097 5 104936651 to 104936757 106 + snRNA gene predicted gene, 24097
Gm43856 5 104971695 to 104972063 368 - unclassified gene predicted gene 43856
Tssr52230 5 104982656 to 104982714 58 - TSS region transcription start site region 52230
Gm43855 5 104987237 to 104987743 506 - pseudogene predicted gene 43855
Gm5870 5 104989050 to 104989331 281 - pseudogene predicted pseudogene 5870
Tssr52231 5 104989349 to 104989371 22 - TSS region transcription start site region 52231