Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:10386959-12981856

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr45164 5 10460397 to 10460398 1 + TSS region transcription start site region 45164
Gm17091 5 10537285 to 10539532 2247 + pseudogene predicted gene 17091
Gm4959 5 10558353 to 10559396 1043 + pseudogene predicted gene 4959
D5Mit70 5 10560429 to 10560548 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 70
Cpgi15546 5 10634921 to 10635114 193 CpG island CpG island 15546
Gm42828 5 10668075 to 10668543 468 - pseudogene predicted gene 42828
Gm42834 5 10706909 to 10707164 255 - pseudogene predicted gene 42834
Tssr1421 5 10709027 to 10709029 2 + TSS region transcription start site region 1421
Gm42833 5 10741052 to 10743175 2123 - unclassified gene predicted gene 42833
Gm6455 5 10865029 to 10870808 5779 + lincRNA gene predicted gene 6455
Gm32266 5 10873002 to 10920903 47901 - lncRNA gene predicted gene, 32266
Gm3321 5 10875636 to 10876729 1093 + pseudogene predicted gene 3321
Gm43358 5 10931568 to 10946522 14954 - lincRNA gene predicted gene 43358
Gm8857 5 10947807 to 10952592 4785 + protein coding gene predicted gene 8857
Gm8861 5 10957406 to 10958237 831 + pseudogene predicted gene 8861
Gm43492 5 11022260 to 11038939 16679 - lincRNA gene predicted gene 43492
Gm8871 5 11039979 to 11044936 4957 + protein coding gene predicted pseudogene 8871
Gm8874 5 11050460 to 11050745 285 + pseudogene predicted gene 8874
4930558F17Rik 5 11109800 to 11126455 16655 - lincRNA gene RIKEN cDNA 4930558F17 gene
Gm8879 5 11127634 to 11132487 4853 + protein coding gene predicted gene 8879
Gm3360 5 11137279 to 11138387 1108 + pseudogene predicted gene 3360
Gm32554 5 11165537 to 11181825 16288 - lincRNA gene predicted gene, 32554
Tssr50121 5 11177432 to 11177436 4 - TSS region transcription start site region 50121
Gm5861 5 11183072 to 11187810 4738 + protein coding gene predicted gene 5861
Gm4047 5 11190194 to 11222014 31820 lncRNA gene predicted gene 4047
Gm29743 5 11192475 to 11193593 1118 + pseudogene predicted gene, 29743
Gm33093 5 11238536 to 11254753 16217 - lincRNA gene predicted gene, 33093
Gm8890 5 11256033 to 11260494 4461 + protein coding gene predicted gene 8890
Gm8891 5 11265590 to 11266421 831 + pseudogene predicted gene 8891
Gm32877 5 11320804 to 11340297 19493 - lincRNA gene predicted gene, 32877
Speer1 5 11341516 to 11346286 4770 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 1
Gm8896 5 11351104 to 11352209 1105 + pseudogene predicted gene 8896
1700108N06Rik 5 11400212 to 11415204 14992 - lincRNA gene RIKEN cDNA 1700108N06 gene
Gm8897 5 11416418 to 11421235 4817 + protein coding gene predicted gene 8897
Gm29745 5 11426453 to 11427139 686 + pseudogene predicted gene, 29745
Gm43540 5 11460424 to 11464271 3847 + pseudogene predicted gene 43540
4930437M23Rik 5 11485335 to 11501452 16117 - lincRNA gene RIKEN cDNA 4930437M23 gene
Gm8906 5 11502685 to 11507417 4732 + protein coding gene predicted gene 8906
Gm21040 5 11512247 to 11513355 1108 + pseudogene predicted gene, 21040
Gm43640 5 11577108 to 11593779 16671 - lincRNA gene predicted gene 43640
Gm6460 5 11594956 to 11599480 4524 + protein coding gene predicted gene 6460
Gm8920 5 11604671 to 11605594 923 + pseudogene predicted gene 8920
Gm33847 5 11664167 to 11680740 16573 - lincRNA gene predicted gene, 33847
Gm8922 5 11681959 to 11686856 4897 + protein coding gene predicted gene 8922
Gm8924 5 11691659 to 11692790 1131 + pseudogene predicted gene 8924
1700003C15Rik 5 11749833 to 11769308 19475 - lincRNA gene RIKEN cDNA 1700003C15 gene
Gm8926 5 11770548 to 11775300 4752 + protein coding gene predicted gene 8926
Gm8929 5 11780123 to 11781228 1105 + pseudogene predicted gene 8929
Gm43132 5 11828046 to 11844359 16313 - lincRNA gene predicted gene 43132
Gm6465 5 11845539 to 11850352 4813 + protein coding gene predicted gene 6465
Gm29755 5 11855234 to 11856181 947 + pseudogene predicted gene, 29755
Gm34493 5 11894629 to 11898228 3599 - lncRNA gene predicted gene, 34493
Gm43131 5 11900483 to 11916836 16353 - lincRNA gene predicted gene 43131
4933402N22Rik 5 11918043 to 11922804 4761 + protein coding gene RIKEN cDNA 4933402N22 gene
Gm5288 5 11927622 to 11928718 1096 + pseudogene predicted gene 5288
Gm29066 5 12089537 to 12097647 8110 + lincRNA gene predicted gene 29066
Gm38242 5 12092020 to 12099441 7421 - unclassified gene predicted gene, 38242
Gm42910 5 12142041 to 12144961 2920 - unclassified gene predicted gene 42910
Gm8953 5 12354680 to 12355375 695 - pseudogene predicted gene 8953
Tssr50122 5 12355771 to 12355780 9 - TSS region transcription start site region 50122
Gmmq8 5 12371157 to 12371157 0 QTL gastrocnemius muscle mass QTL 8
Tssr45165 5 12374655 to 12374670 15 + TSS region transcription start site region 45165
Tssr45166 5 12383156 to 12383177 21 + TSS region transcription start site region 45166
Cpgi15547 5 12383193 to 12384026 833 CpG island CpG island 15547
Tssr45167 5 12383300 to 12383322 22 + TSS region transcription start site region 45167
Tssr45168 5 12383325 to 12383336 11 + TSS region transcription start site region 45168
Tssr45169 5 12383341 to 12383351 10 + TSS region transcription start site region 45169
Tssr45170 5 12383377 to 12383395 18 + TSS region transcription start site region 45170
Sema3d 5 12383385 to 12588948 205563 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Tssr45171 5 12383483 to 12383543 60 + TSS region transcription start site region 45171
Tssr45172 5 12466874 to 12466879 5 + TSS region transcription start site region 45172
Gm8925 5 12478866 to 12479628 762 - pseudogene predicted gene 8925
Gm42909 5 12554632 to 12558250 3618 + unclassified gene predicted gene 42909
Gm42580 5 12669155 to 12670728 1573 - pseudogene predicted gene 42580
Tssr1422 5 12719662 to 12719696 34 + TSS region transcription start site region 1422
Tssr45173 5 12719819 to 12719867 48 + TSS region transcription start site region 45173
Cpgi15548 5 12928834 to 12929155 321 CpG island CpG island 15548
Gm23243 5 12940370 to 12940479 109 + miRNA gene predicted gene, 23243