Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:103842871-104342882

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aff1 5 103692374 to 103855322 162948 + protein coding gene AF4/FMR2 family, member 1
Tssr47613 5 103846362 to 103846371 9 + TSS region transcription start site region 47613
Tssr47614 5 103846592 to 103846596 4 + TSS region transcription start site region 47614
Klhl8 5 103862050 to 103911272 49222 - protein coding gene kelch-like 8
Gm42139 5 103877662 to 103891530 13868 + lncRNA gene predicted gene, 42139
Gm43547 5 103879908 to 103880235 327 - unclassified gene predicted gene 43547
Tssr52171 5 103886045 to 103886093 48 - TSS region transcription start site region 52171
Gm24897 5 103898879 to 103898985 106 + snRNA gene predicted gene, 24897
D5Mit404 5 103908168 to 103908290 122 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 404
Cpgi16139 5 103910672 to 103911721 1049 CpG island CpG island 16139
Tssr52172 5 103911196 to 103911275 79 - TSS region transcription start site region 52172
Cpgi16140 5 103927624 to 103927845 221 CpG island CpG island 16140
Hsd17b13 5 103955442 to 103977388 21946 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 13
Tssr52173 5 103967041 to 103967046 5 - TSS region transcription start site region 52173
Tssr52174 5 103970842 to 103970848 6 - TSS region transcription start site region 52174
Tssr52175 5 103977339 to 103977356 17 - TSS region transcription start site region 52175
Tssr52176 5 103977360 to 103977403 43 - TSS region transcription start site region 52176
Tssr52177 5 103977404 to 103977415 11 - TSS region transcription start site region 52177
Tssr47615 5 103982931 to 103982935 4 + TSS region transcription start site region 47615
Gm8200 5 103989370 to 103989591 221 + pseudogene predicted gene 8200
Hsd17b11 5 103989765 to 104021796 32031 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 11
Tssr52178 5 103990238 to 103990243 5 - TSS region transcription start site region 52178
D5Mit275 5 103997680 to 103997803 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 275
Tssr52179 5 104017765 to 104017791 26 - TSS region transcription start site region 52179
Tssr52180 5 104018396 to 104018406 10 - TSS region transcription start site region 52180
Tssr52181 5 104018431 to 104018434 3 - TSS region transcription start site region 52181
Cpgi16141 5 104021497 to 104022142 645 CpG island CpG island 16141
Tssr52182 5 104021779 to 104021796 17 - TSS region transcription start site region 52182
Tssr52183 5 104021799 to 104021865 66 - TSS region transcription start site region 52183
Tssr52184 5 104021928 to 104021945 17 - TSS region transcription start site region 52184
Tssr52185 5 104021948 to 104021967 19 - TSS region transcription start site region 52185
Tssr52186 5 104022114 to 104022129 15 - TSS region transcription start site region 52186
Tssr52187 5 104022131 to 104022186 55 - TSS region transcription start site region 52187
Tssr52188 5 104022190 to 104022210 20 - TSS region transcription start site region 52188
Gm43545 5 104044619 to 104047397 2778 - unclassified gene predicted gene 43545
Cpgi16142 5 104046419 to 104047552 1133 CpG island CpG island 16142
Nudt9 5 104046518 to 104065378 18860 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 9
Tssr47616 5 104046532 to 104046561 29 + TSS region transcription start site region 47616
Tssr47617 5 104046788 to 104046810 22 + TSS region transcription start site region 47617
Tssr47618 5 104046881 to 104046899 18 + TSS region transcription start site region 47618
Tssr47619 5 104046907 to 104046914 7 + TSS region transcription start site region 47619
Tssr47620 5 104046918 to 104046975 57 + TSS region transcription start site region 47620
Tssr47621 5 104046980 to 104047044 64 + TSS region transcription start site region 47621
Tssr47622 5 104047064 to 104047073 9 + TSS region transcription start site region 47622
Mir5619 5 104048003 to 104048063 60 + miRNA gene microRNA 5619
Gm17660 5 104070064 to 104077608 7544 - protein coding gene predicted gene, 17660
Gm43333 5 104070064 to 104072325 2261 - unclassified gene predicted gene 43333
Tssr52189 5 104072911 to 104072920 9 - TSS region transcription start site region 52189
Sparcl1 5 104079111 to 104113733 34622 - protein coding gene SPARC-like 1
Tssr52190 5 104089681 to 104089693 12 - TSS region transcription start site region 52190
Cpgi16143 5 104092404 to 104092599 195 CpG island CpG island 16143
Tssr52191 5 104092465 to 104092486 21 - TSS region transcription start site region 52191
Tssr52192 5 104092871 to 104092882 11 - TSS region transcription start site region 52192
Tssr1561 5 104092884 to 104092936 52 + TSS region transcription start site region 1561
Tssr52193 5 104092888 to 104092902 14 - TSS region transcription start site region 52193
Tssr52194 5 104092920 to 104092963 43 - TSS region transcription start site region 52194
Tssr47623 5 104092945 to 104093059 114 + TSS region transcription start site region 47623
Tssr52195 5 104093000 to 104093010 10 - TSS region transcription start site region 52195
Tssr52196 5 104093013 to 104093033 20 - TSS region transcription start site region 52196
Tssr52197 5 104093035 to 104093055 20 - TSS region transcription start site region 52197
Tssr52198 5 104093064 to 104093107 43 - TSS region transcription start site region 52198
Tssr52199 5 104093113 to 104093140 27 - TSS region transcription start site region 52199
Tssr52200 5 104093141 to 104093180 39 - TSS region transcription start site region 52200
Tssr52201 5 104093198 to 104093209 11 - TSS region transcription start site region 52201
Tssr52202 5 104093222 to 104093243 21 - TSS region transcription start site region 52202
Tssr52203 5 104093244 to 104093266 22 - TSS region transcription start site region 52203
Tssr52204 5 104093283 to 104093293 10 - TSS region transcription start site region 52204
Tssr52205 5 104093304 to 104093320 16 - TSS region transcription start site region 52205
Tssr52206 5 104093333 to 104093350 17 - TSS region transcription start site region 52206
Tssr52207 5 104093363 to 104093377 14 - TSS region transcription start site region 52207
Tssr1562 5 104094631 to 104094666 35 + TSS region transcription start site region 1562
Tssr52208 5 104094670 to 104094687 17 - TSS region transcription start site region 52208
Tssr52209 5 104094694 to 104094712 18 - TSS region transcription start site region 52209
Tssr52210 5 104097742 to 104097775 33 - TSS region transcription start site region 52210
Tssr1563 5 104108480 to 104108485 5 + TSS region transcription start site region 1563
Gm26703 5 104109217 to 104119687 10470 + antisense lncRNA gene predicted gene, 26703
Tssr52211 5 104113420 to 104113435 15 - TSS region transcription start site region 52211
Tssr52212 5 104113449 to 104113472 23 - TSS region transcription start site region 52212
Tssr52213 5 104113568 to 104113579 11 - TSS region transcription start site region 52213
Tssr52214 5 104113588 to 104113599 11 - TSS region transcription start site region 52214
Tssr52215 5 104113690 to 104113738 48 - TSS region transcription start site region 52215
Tssr52216 5 104113740 to 104113756 16 - TSS region transcription start site region 52216
Tssr52217 5 104113777 to 104113788 11 - TSS region transcription start site region 52217
Tssr1564 5 104113875 to 104113902 27 - TSS region transcription start site region 1564
Tssr1565 5 104113929 to 104113943 14 - TSS region transcription start site region 1565
Tssr1566 5 104113949 to 104113964 15 - TSS region transcription start site region 1566
Tssr1567 5 104114021 to 104114037 16 - TSS region transcription start site region 1567
Tssr1568 5 104114069 to 104114099 30 - TSS region transcription start site region 1568
Tssr47624 5 104114157 to 104114163 6 + TSS region transcription start site region 47624
Cpgi16144 5 104119375 to 104119650 275 CpG island CpG island 16144
Tssr52218 5 104133977 to 104133979 2 - TSS region transcription start site region 52218
D5Mit363 5 104139201 to 104139450 249 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 363
Gm3157 5 104144554 to 104146300 1746 - pseudogene predicted gene 3157
Tssr47625 5 104170676 to 104170699 23 + TSS region transcription start site region 47625
Dspp 5 104170712 to 104180127 9415 + protein coding gene dentin sialophosphoprotein
Tssr47626 5 104202609 to 104202624 15 + TSS region transcription start site region 47626
Dmp1 5 104202613 to 104214102 11489 + protein coding gene dentin matrix protein 1
Cpgi16145 5 104211657 to 104212354 697 CpG island CpG island 16145
Ahl18 5 104239005 to 104239199 194 QTL age related hearing loss, early onset 18
Bwem1 5 104239005 to 104239199 194 QTL body weight day 30 males 1
Chldq12 5 104239005 to 104239199 194 QTL cholesterol and HDL QTL 12
Cpfd3 5 104239005 to 104239199 194 QTL cerebellum pattern fissures, declival 3
Drb2 5 104239005 to 104239199 194 QTL dopamine receptor binding 2
Vng 5 104239005 to 126924008 22685003 heritable phenotypic marker van gogh
Sluc33 5 104239005 to 120573921 16334916 QTL susceptibility to lung cancer 33
D5Mit10 5 104239005 to 104239199 194 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 10
Tir5 5 104239199 to 63548099 -40691100 QTL trypanosome infection response 5
Gm31048 5 104239313 to 104246702 7389 - lincRNA gene predicted gene, 31048
D5Mit400 5 104241870 to 104242043 173 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 400
Gm23616 5 104297188 to 104297297 109 + miRNA gene predicted gene, 23616
Tssr47627 5 104299281 to 104299296 15 + TSS region transcription start site region 47627
Ibsp 5 104299287 to 104311472 12185 + protein coding gene integrin binding sialoprotein
Tssr47628 5 104302450 to 104302462 12 + TSS region transcription start site region 47628
Tssr47629 5 104309311 to 104309322 11 + TSS region transcription start site region 47629
Tssr47630 5 104309327 to 104309346 19 + TSS region transcription start site region 47630
Tssr47631 5 104309365 to 104309400 35 + TSS region transcription start site region 47631
Tssr52219 5 104310076 to 104310098 22 - TSS region transcription start site region 52219
Cpgi16146 5 104310082 to 104310497 415 CpG island CpG island 16146
Tssr52220 5 104310113 to 104310136 23 - TSS region transcription start site region 52220
Mepe 5 104325329 to 104338611 13282 + protein coding gene matrix extracellular phosphoglycoprotein with ASARM motif (bone)
Tssr47632 5 104325360 to 104325368 8 + TSS region transcription start site region 47632