Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:103741196-104081275

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aff1 5 103692374 to 103855322 162948 + protein coding gene AF4/FMR2 family, member 1
Tssr47584 5 103753011 to 103753034 23 + TSS region transcription start site region 47584
Tssr47585 5 103753052 to 103753102 50 + TSS region transcription start site region 47585
Cpgi16138 5 103753287 to 103754652 1365 CpG island CpG island 16138
Tssr47586 5 103753562 to 103753579 17 + TSS region transcription start site region 47586
Tssr47587 5 103753612 to 103753618 6 + TSS region transcription start site region 47587
Tssr47588 5 103753624 to 103753651 27 + TSS region transcription start site region 47588
Tssr47589 5 103753661 to 103753668 7 + TSS region transcription start site region 47589
Tssr47590 5 103753675 to 103753705 30 + TSS region transcription start site region 47590
Tssr47591 5 103753706 to 103753718 12 + TSS region transcription start site region 47591
Tssr47592 5 103753722 to 103753733 11 + TSS region transcription start site region 47592
Tssr47593 5 103753735 to 103753758 23 + TSS region transcription start site region 47593
Tssr52169 5 103753844 to 103753848 4 - TSS region transcription start site region 52169
Tssr47594 5 103753909 to 103753923 14 + TSS region transcription start site region 47594
Tssr47595 5 103753924 to 103753935 11 + TSS region transcription start site region 47595
Tssr47596 5 103753944 to 103753963 19 + TSS region transcription start site region 47596
Tssr47597 5 103753980 to 103753987 7 + TSS region transcription start site region 47597
Tssr47598 5 103754154 to 103754188 34 + TSS region transcription start site region 47598
Tssr47599 5 103754200 to 103754217 17 + TSS region transcription start site region 47599
Tssr47600 5 103754218 to 103754229 11 + TSS region transcription start site region 47600
Tssr47601 5 103754458 to 103754529 71 + TSS region transcription start site region 47601
Tssr47602 5 103754560 to 103754581 21 + TSS region transcription start site region 47602
Tssr47603 5 103754794 to 103754798 4 + TSS region transcription start site region 47603
Tssr47604 5 103780243 to 103780245 2 + TSS region transcription start site region 47604
Tssr47605 5 103782068 to 103782071 3 + TSS region transcription start site region 47605
Tssr47606 5 103783811 to 103783830 19 + TSS region transcription start site region 47606
Tssr47607 5 103784150 to 103784162 12 + TSS region transcription start site region 47607
Tssr47608 5 103784233 to 103784275 42 + TSS region transcription start site region 47608
Tssr47609 5 103784416 to 103784429 13 + TSS region transcription start site region 47609
Tssr52170 5 103795185 to 103795190 5 - TSS region transcription start site region 52170
Tssr47610 5 103804794 to 103804808 14 + TSS region transcription start site region 47610
Tssr47611 5 103814977 to 103815007 30 + TSS region transcription start site region 47611
Tssr47612 5 103824451 to 103824456 5 + TSS region transcription start site region 47612
Tssr47613 5 103846362 to 103846371 9 + TSS region transcription start site region 47613
Tssr47614 5 103846592 to 103846596 4 + TSS region transcription start site region 47614
Klhl8 5 103862050 to 103911272 49222 - protein coding gene kelch-like 8
Gm42139 5 103877662 to 103891530 13868 + lncRNA gene predicted gene, 42139
Gm43547 5 103879908 to 103880235 327 - unclassified gene predicted gene 43547
Tssr52171 5 103886045 to 103886093 48 - TSS region transcription start site region 52171
Gm24897 5 103898879 to 103898985 106 + snRNA gene predicted gene, 24897
D5Mit404 5 103908168 to 103908290 122 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 404
Cpgi16139 5 103910672 to 103911721 1049 CpG island CpG island 16139
Tssr52172 5 103911196 to 103911275 79 - TSS region transcription start site region 52172
Cpgi16140 5 103927624 to 103927845 221 CpG island CpG island 16140
Hsd17b13 5 103955442 to 103977388 21946 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 13
Tssr52173 5 103967041 to 103967046 5 - TSS region transcription start site region 52173
Tssr52174 5 103970842 to 103970848 6 - TSS region transcription start site region 52174
Tssr52175 5 103977339 to 103977356 17 - TSS region transcription start site region 52175
Tssr52176 5 103977360 to 103977403 43 - TSS region transcription start site region 52176
Tssr52177 5 103977404 to 103977415 11 - TSS region transcription start site region 52177
Tssr47615 5 103982931 to 103982935 4 + TSS region transcription start site region 47615
Gm8200 5 103989370 to 103989591 221 + pseudogene predicted gene 8200
Hsd17b11 5 103989765 to 104021796 32031 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 11
Tssr52178 5 103990238 to 103990243 5 - TSS region transcription start site region 52178
D5Mit275 5 103997680 to 103997803 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 275
Tssr52179 5 104017765 to 104017791 26 - TSS region transcription start site region 52179
Tssr52180 5 104018396 to 104018406 10 - TSS region transcription start site region 52180
Tssr52181 5 104018431 to 104018434 3 - TSS region transcription start site region 52181
Cpgi16141 5 104021497 to 104022142 645 CpG island CpG island 16141
Tssr52182 5 104021779 to 104021796 17 - TSS region transcription start site region 52182
Tssr52183 5 104021799 to 104021865 66 - TSS region transcription start site region 52183
Tssr52184 5 104021928 to 104021945 17 - TSS region transcription start site region 52184
Tssr52185 5 104021948 to 104021967 19 - TSS region transcription start site region 52185
Tssr52186 5 104022114 to 104022129 15 - TSS region transcription start site region 52186
Tssr52187 5 104022131 to 104022186 55 - TSS region transcription start site region 52187
Tssr52188 5 104022190 to 104022210 20 - TSS region transcription start site region 52188
Gm43545 5 104044619 to 104047397 2778 - unclassified gene predicted gene 43545
Cpgi16142 5 104046419 to 104047552 1133 CpG island CpG island 16142
Nudt9 5 104046518 to 104065378 18860 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 9
Tssr47616 5 104046532 to 104046561 29 + TSS region transcription start site region 47616
Tssr47617 5 104046788 to 104046810 22 + TSS region transcription start site region 47617
Tssr47618 5 104046881 to 104046899 18 + TSS region transcription start site region 47618
Tssr47619 5 104046907 to 104046914 7 + TSS region transcription start site region 47619
Tssr47620 5 104046918 to 104046975 57 + TSS region transcription start site region 47620
Tssr47621 5 104046980 to 104047044 64 + TSS region transcription start site region 47621
Tssr47622 5 104047064 to 104047073 9 + TSS region transcription start site region 47622
Mir5619 5 104048003 to 104048063 60 + miRNA gene microRNA 5619
Gm43333 5 104070064 to 104072325 2261 - unclassified gene predicted gene 43333
Gm17660 5 104070064 to 104077608 7544 - protein coding gene predicted gene, 17660
Tssr52189 5 104072911 to 104072920 9 - TSS region transcription start site region 52189
Sparcl1 5 104079111 to 104113733 34622 - protein coding gene SPARC-like 1