Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:103520711-103714403

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23 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpn13 5 103425192 to 103598303 173111 + protein coding gene protein tyrosine phosphatase, non-receptor type 13
Gm42620 5 103513445 to 103533021 19576 - antisense lncRNA gene predicted gene 42620
Tssr47567 5 103557909 to 103557927 18 + TSS region transcription start site region 47567
D5Mit93 5 103584813 to 103585005 192 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 93
Gm23085 5 103602587 to 103602879 292 + unclassified non-coding RNA gene predicted gene, 23085
Slc10a6 5 103605711 to 103629403 23692 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 6
Gm15844 5 103624471 to 103625046 575 + pseudogene predicted gene 15844
Tssr52162 5 103629236 to 103629269 33 - TSS region transcription start site region 52162
Tssr52163 5 103629279 to 103629296 17 - TSS region transcription start site region 52163
Gm43546 5 103635225 to 103636167 942 + unclassified gene predicted gene 43546
Tssr52164 5 103647470 to 103647479 9 - TSS region transcription start site region 52164
Tssr52165 5 103647493 to 103647505 12 - TSS region transcription start site region 52165
1700016H13Rik 5 103648583 to 103655860 7277 - protein coding gene RIKEN cDNA 1700016H13 gene
Cpgi16136 5 103655351 to 103656040 689 CpG island CpG island 16136
Tssr52166 5 103655709 to 103655743 34 - TSS region transcription start site region 52166
Tssr52167 5 103655744 to 103655751 7 - TSS region transcription start site region 52167
Gm42138 5 103656082 to 103666572 10490 + lncRNA gene predicted gene, 42138
Gm25721 5 103658237 to 103658407 170 + snRNA gene predicted gene, 25721
Tssr52168 5 103692064 to 103692065 1 - TSS region transcription start site region 52168
Cpgi16137 5 103692102 to 103693643 1541 CpG island CpG island 16137
Tssr47568 5 103692372 to 103692431 59 + TSS region transcription start site region 47568
Aff1 5 103692374 to 103855322 162948 + protein coding gene AF4/FMR2 family, member 1
Tssr47569 5 103692434 to 103692460 26 + TSS region transcription start site region 47569