Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:103295351-104016040

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930429D17Rik 5 103230375 to 103299029 68654 - lincRNA gene RIKEN cDNA 4930429D17 gene
Tssr52155 5 103309703 to 103309739 36 - TSS region transcription start site region 52155
4921523P09Rik 5 103343971 to 103345106 1135 unclassified gene RIKEN cDNA 4921523P09 gene
Gm42619 5 103343972 to 103345107 1135 + unclassified gene predicted gene 42619
1700021F02Rik 5 103346594 to 103348299 1705 + lincRNA gene RIKEN cDNA 1700021F02 gene
Tssr52156 5 103347903 to 103347912 9 - TSS region transcription start site region 52156
5430427N15Rik 5 103354306 to 103356698 2392 - lincRNA gene RIKEN cDNA 5430427N15 gene
Gm30443 5 103359977 to 103360754 777 + lncRNA gene predicted gene, 30443
Cpgi16133 5 103360660 to 103360850 190 CpG island CpG island 16133
Cpgi16134 5 103365413 to 103365588 175 CpG island CpG island 16134
Tssr47555 5 103366374 to 103366378 4 + TSS region transcription start site region 47555
Tssr47556 5 103375445 to 103375448 3 + TSS region transcription start site region 47556
Tssr52157 5 103377260 to 103377294 34 - TSS region transcription start site region 52157
Tssr52158 5 103377312 to 103377329 17 - TSS region transcription start site region 52158
Tssr52159 5 103377332 to 103377338 6 - TSS region transcription start site region 52159
Cpgi16135 5 103424646 to 103426102 1456 CpG island CpG island 16135
Tssr47557 5 103425181 to 103425197 16 + TSS region transcription start site region 47557
Ptpn13 5 103425192 to 103598303 173111 + protein coding gene protein tyrosine phosphatase, non-receptor type 13
Tssr47558 5 103425202 to 103425231 29 + TSS region transcription start site region 47558
Tssr47559 5 103425233 to 103425259 26 + TSS region transcription start site region 47559
Tssr52160 5 103425720 to 103425729 9 - TSS region transcription start site region 52160
Tssr52161 5 103425748 to 103425761 13 - TSS region transcription start site region 52161
Tssr47560 5 103501113 to 103501131 18 + TSS region transcription start site region 47560
Tssr47561 5 103501365 to 103501425 60 + TSS region transcription start site region 47561
Tssr47562 5 103501438 to 103501449 11 + TSS region transcription start site region 47562
Tssr47563 5 103501450 to 103501476 26 + TSS region transcription start site region 47563
Tssr47564 5 103501556 to 103501570 14 + TSS region transcription start site region 47564
Tssr47565 5 103501590 to 103501601 11 + TSS region transcription start site region 47565
Gm42620 5 103513445 to 103533021 19576 - antisense lncRNA gene predicted gene 42620
Tssr47566 5 103516126 to 103516137 11 + TSS region transcription start site region 47566
Tssr47567 5 103557909 to 103557927 18 + TSS region transcription start site region 47567
D5Mit93 5 103584813 to 103585005 192 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 93
Gm23085 5 103602587 to 103602879 292 + unclassified non-coding RNA gene predicted gene, 23085
Slc10a6 5 103605711 to 103629403 23692 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 6
Gm15844 5 103624471 to 103625046 575 + pseudogene predicted gene 15844
Tssr52162 5 103629236 to 103629269 33 - TSS region transcription start site region 52162
Tssr52163 5 103629279 to 103629296 17 - TSS region transcription start site region 52163
Gm43546 5 103635225 to 103636167 942 + unclassified gene predicted gene 43546
Tssr52164 5 103647470 to 103647479 9 - TSS region transcription start site region 52164
Tssr52165 5 103647493 to 103647505 12 - TSS region transcription start site region 52165
1700016H13Rik 5 103648583 to 103655860 7277 - protein coding gene RIKEN cDNA 1700016H13 gene
Cpgi16136 5 103655351 to 103656040 689 CpG island CpG island 16136
Tssr52166 5 103655709 to 103655743 34 - TSS region transcription start site region 52166
Tssr52167 5 103655744 to 103655751 7 - TSS region transcription start site region 52167
Gm42138 5 103656082 to 103666572 10490 + lncRNA gene predicted gene, 42138
Gm25721 5 103658237 to 103658407 170 + snRNA gene predicted gene, 25721
Tssr52168 5 103692064 to 103692065 1 - TSS region transcription start site region 52168
Cpgi16137 5 103692102 to 103693643 1541 CpG island CpG island 16137
Tssr47568 5 103692372 to 103692431 59 + TSS region transcription start site region 47568
Aff1 5 103692374 to 103855322 162948 + protein coding gene AF4/FMR2 family, member 1
Tssr47569 5 103692434 to 103692460 26 + TSS region transcription start site region 47569
Tssr47570 5 103715204 to 103715222 18 + TSS region transcription start site region 47570
Tssr47571 5 103715223 to 103715275 52 + TSS region transcription start site region 47571
Tssr47572 5 103715316 to 103715336 20 + TSS region transcription start site region 47572
Tssr47573 5 103715338 to 103715353 15 + TSS region transcription start site region 47573
Tssr47574 5 103715949 to 103715958 9 + TSS region transcription start site region 47574
Tssr47575 5 103716825 to 103716835 10 + TSS region transcription start site region 47575
Tssr47576 5 103720006 to 103720025 19 + TSS region transcription start site region 47576
Tssr47577 5 103722765 to 103722782 17 + TSS region transcription start site region 47577
Tssr47578 5 103722931 to 103722944 13 + TSS region transcription start site region 47578
Tssr47579 5 103722953 to 103722971 18 + TSS region transcription start site region 47579
Tssr47580 5 103722991 to 103723007 16 + TSS region transcription start site region 47580
Tssr47581 5 103736907 to 103736914 7 + TSS region transcription start site region 47581
Tssr47582 5 103737343 to 103737369 26 + TSS region transcription start site region 47582
Tssr47583 5 103738463 to 103738466 3 + TSS region transcription start site region 47583
Tssr47584 5 103753011 to 103753034 23 + TSS region transcription start site region 47584
Tssr47585 5 103753052 to 103753102 50 + TSS region transcription start site region 47585
Cpgi16138 5 103753287 to 103754652 1365 CpG island CpG island 16138
Tssr47586 5 103753562 to 103753579 17 + TSS region transcription start site region 47586
Tssr47587 5 103753612 to 103753618 6 + TSS region transcription start site region 47587
Tssr47588 5 103753624 to 103753651 27 + TSS region transcription start site region 47588
Tssr47589 5 103753661 to 103753668 7 + TSS region transcription start site region 47589
Tssr47590 5 103753675 to 103753705 30 + TSS region transcription start site region 47590
Tssr47591 5 103753706 to 103753718 12 + TSS region transcription start site region 47591
Tssr47592 5 103753722 to 103753733 11 + TSS region transcription start site region 47592
Tssr47593 5 103753735 to 103753758 23 + TSS region transcription start site region 47593
Tssr52169 5 103753844 to 103753848 4 - TSS region transcription start site region 52169
Tssr47594 5 103753909 to 103753923 14 + TSS region transcription start site region 47594
Tssr47595 5 103753924 to 103753935 11 + TSS region transcription start site region 47595
Tssr47596 5 103753944 to 103753963 19 + TSS region transcription start site region 47596
Tssr47597 5 103753980 to 103753987 7 + TSS region transcription start site region 47597
Tssr47598 5 103754154 to 103754188 34 + TSS region transcription start site region 47598
Tssr47599 5 103754200 to 103754217 17 + TSS region transcription start site region 47599
Tssr47600 5 103754218 to 103754229 11 + TSS region transcription start site region 47600
Tssr47601 5 103754458 to 103754529 71 + TSS region transcription start site region 47601
Tssr47602 5 103754560 to 103754581 21 + TSS region transcription start site region 47602
Tssr47603 5 103754794 to 103754798 4 + TSS region transcription start site region 47603
Tssr47604 5 103780243 to 103780245 2 + TSS region transcription start site region 47604
Tssr47605 5 103782068 to 103782071 3 + TSS region transcription start site region 47605
Tssr47606 5 103783811 to 103783830 19 + TSS region transcription start site region 47606
Tssr47607 5 103784150 to 103784162 12 + TSS region transcription start site region 47607
Tssr47608 5 103784233 to 103784275 42 + TSS region transcription start site region 47608
Tssr47609 5 103784416 to 103784429 13 + TSS region transcription start site region 47609
Tssr52170 5 103795185 to 103795190 5 - TSS region transcription start site region 52170
Tssr47610 5 103804794 to 103804808 14 + TSS region transcription start site region 47610
Tssr47611 5 103814977 to 103815007 30 + TSS region transcription start site region 47611
Tssr47612 5 103824451 to 103824456 5 + TSS region transcription start site region 47612
Tssr47613 5 103846362 to 103846371 9 + TSS region transcription start site region 47613
Tssr47614 5 103846592 to 103846596 4 + TSS region transcription start site region 47614
Klhl8 5 103862050 to 103911272 49222 - protein coding gene kelch-like 8
Gm42139 5 103877662 to 103891530 13868 + lncRNA gene predicted gene, 42139
Gm43547 5 103879908 to 103880235 327 - unclassified gene predicted gene 43547
Tssr52171 5 103886045 to 103886093 48 - TSS region transcription start site region 52171
Gm24897 5 103898879 to 103898985 106 + snRNA gene predicted gene, 24897
D5Mit404 5 103908168 to 103908290 122 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 404
Cpgi16139 5 103910672 to 103911721 1049 CpG island CpG island 16139
Tssr52172 5 103911196 to 103911275 79 - TSS region transcription start site region 52172
Cpgi16140 5 103927624 to 103927845 221 CpG island CpG island 16140
Hsd17b13 5 103955442 to 103977388 21946 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 13
Tssr52173 5 103967041 to 103967046 5 - TSS region transcription start site region 52173
Tssr52174 5 103970842 to 103970848 6 - TSS region transcription start site region 52174
Tssr52175 5 103977339 to 103977356 17 - TSS region transcription start site region 52175
Tssr52176 5 103977360 to 103977403 43 - TSS region transcription start site region 52176
Tssr52177 5 103977404 to 103977415 11 - TSS region transcription start site region 52177
Tssr47615 5 103982931 to 103982935 4 + TSS region transcription start site region 47615
Gm8200 5 103989370 to 103989591 221 + pseudogene predicted gene 8200
Hsd17b11 5 103989765 to 104021796 32031 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 11
Tssr52178 5 103990238 to 103990243 5 - TSS region transcription start site region 52178
D5Mit275 5 103997680 to 103997803 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 275