Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:103123971-103565106

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mapk10 5 102908547 to 103211430 302883 - protein coding gene mitogen-activated protein kinase 10
2900063K03Rik 5 103202753 to 103203547 794 unclassified gene RIKEN cDNA 2900063K03 gene
Tssr52151 5 103211074 to 103211101 27 - TSS region transcription start site region 52151
Tssr52152 5 103211109 to 103211128 19 - TSS region transcription start site region 52152
Tssr52153 5 103211236 to 103211245 9 - TSS region transcription start site region 52153
Tssr52154 5 103211251 to 103211321 70 - TSS region transcription start site region 52154
4930429D17Rik 5 103230375 to 103299029 68654 - lincRNA gene RIKEN cDNA 4930429D17 gene
Gm18702 5 103273909 to 103274496 587 + pseudogene predicted gene, 18702
Tssr52155 5 103309703 to 103309739 36 - TSS region transcription start site region 52155
4921523P09Rik 5 103343971 to 103345106 1135 unclassified gene RIKEN cDNA 4921523P09 gene
Gm42619 5 103343972 to 103345107 1135 + unclassified gene predicted gene 42619
1700021F02Rik 5 103346594 to 103348299 1705 + lincRNA gene RIKEN cDNA 1700021F02 gene
Tssr52156 5 103347903 to 103347912 9 - TSS region transcription start site region 52156
5430427N15Rik 5 103354306 to 103356698 2392 - lincRNA gene RIKEN cDNA 5430427N15 gene
Gm30443 5 103359977 to 103360754 777 + lncRNA gene predicted gene, 30443
Cpgi16133 5 103360660 to 103360850 190 CpG island CpG island 16133
Cpgi16134 5 103365413 to 103365588 175 CpG island CpG island 16134
Tssr47555 5 103366374 to 103366378 4 + TSS region transcription start site region 47555
Tssr47556 5 103375445 to 103375448 3 + TSS region transcription start site region 47556
Tssr52157 5 103377260 to 103377294 34 - TSS region transcription start site region 52157
Tssr52158 5 103377312 to 103377329 17 - TSS region transcription start site region 52158
Tssr52159 5 103377332 to 103377338 6 - TSS region transcription start site region 52159
Cpgi16135 5 103424646 to 103426102 1456 CpG island CpG island 16135
Tssr47557 5 103425181 to 103425197 16 + TSS region transcription start site region 47557
Ptpn13 5 103425192 to 103598303 173111 + protein coding gene protein tyrosine phosphatase, non-receptor type 13
Tssr47558 5 103425202 to 103425231 29 + TSS region transcription start site region 47558
Tssr47559 5 103425233 to 103425259 26 + TSS region transcription start site region 47559
Tssr52160 5 103425720 to 103425729 9 - TSS region transcription start site region 52160
Tssr52161 5 103425748 to 103425761 13 - TSS region transcription start site region 52161
Tssr47560 5 103501113 to 103501131 18 + TSS region transcription start site region 47560
Tssr47561 5 103501365 to 103501425 60 + TSS region transcription start site region 47561
Tssr47562 5 103501438 to 103501449 11 + TSS region transcription start site region 47562
Tssr47563 5 103501450 to 103501476 26 + TSS region transcription start site region 47563
Tssr47564 5 103501556 to 103501570 14 + TSS region transcription start site region 47564
Tssr47565 5 103501590 to 103501601 11 + TSS region transcription start site region 47565
Gm42620 5 103513445 to 103533021 19576 - antisense lncRNA gene predicted gene 42620
Tssr47566 5 103516126 to 103516137 11 + TSS region transcription start site region 47566
Tssr47567 5 103557909 to 103557927 18 + TSS region transcription start site region 47567