Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:102956594-103738299

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mapk10 5 102908547 to 103211430 302883 - protein coding gene mitogen-activated protein kinase 10
Tssr52148 5 102978480 to 102978483 3 - TSS region transcription start site region 52148
Gm43789 5 102983842 to 102986313 2471 - unclassified gene predicted gene 43789
D5Mit412 5 103014337 to 103014488 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 412
Tssr52149 5 103026928 to 103026971 43 - TSS region transcription start site region 52149
Tssr52150 5 103100054 to 103100088 34 - TSS region transcription start site region 52150
2900063K03Rik 5 103202753 to 103203547 794 unclassified gene RIKEN cDNA 2900063K03 gene
Tssr52151 5 103211074 to 103211101 27 - TSS region transcription start site region 52151
Tssr52152 5 103211109 to 103211128 19 - TSS region transcription start site region 52152
Tssr52153 5 103211236 to 103211245 9 - TSS region transcription start site region 52153
Tssr52154 5 103211251 to 103211321 70 - TSS region transcription start site region 52154
4930429D17Rik 5 103230375 to 103299029 68654 - lincRNA gene RIKEN cDNA 4930429D17 gene
Gm18702 5 103273909 to 103274496 587 + pseudogene predicted gene, 18702
Tssr52155 5 103309703 to 103309739 36 - TSS region transcription start site region 52155
4921523P09Rik 5 103343971 to 103345106 1135 unclassified gene RIKEN cDNA 4921523P09 gene
Gm42619 5 103343972 to 103345107 1135 + unclassified gene predicted gene 42619
1700021F02Rik 5 103346594 to 103348299 1705 + lincRNA gene RIKEN cDNA 1700021F02 gene
Tssr52156 5 103347903 to 103347912 9 - TSS region transcription start site region 52156
5430427N15Rik 5 103354306 to 103356698 2392 - lincRNA gene RIKEN cDNA 5430427N15 gene
Gm30443 5 103359977 to 103360754 777 + lncRNA gene predicted gene, 30443
Cpgi16133 5 103360660 to 103360850 190 CpG island CpG island 16133
Cpgi16134 5 103365413 to 103365588 175 CpG island CpG island 16134
Tssr47555 5 103366374 to 103366378 4 + TSS region transcription start site region 47555
Tssr47556 5 103375445 to 103375448 3 + TSS region transcription start site region 47556
Tssr52157 5 103377260 to 103377294 34 - TSS region transcription start site region 52157
Tssr52158 5 103377312 to 103377329 17 - TSS region transcription start site region 52158
Tssr52159 5 103377332 to 103377338 6 - TSS region transcription start site region 52159
Cpgi16135 5 103424646 to 103426102 1456 CpG island CpG island 16135
Tssr47557 5 103425181 to 103425197 16 + TSS region transcription start site region 47557
Ptpn13 5 103425192 to 103598303 173111 + protein coding gene protein tyrosine phosphatase, non-receptor type 13
Tssr47558 5 103425202 to 103425231 29 + TSS region transcription start site region 47558
Tssr47559 5 103425233 to 103425259 26 + TSS region transcription start site region 47559
Tssr52160 5 103425720 to 103425729 9 - TSS region transcription start site region 52160
Tssr52161 5 103425748 to 103425761 13 - TSS region transcription start site region 52161
Tssr47560 5 103501113 to 103501131 18 + TSS region transcription start site region 47560
Tssr47561 5 103501365 to 103501425 60 + TSS region transcription start site region 47561
Tssr47562 5 103501438 to 103501449 11 + TSS region transcription start site region 47562
Tssr47563 5 103501450 to 103501476 26 + TSS region transcription start site region 47563
Tssr47564 5 103501556 to 103501570 14 + TSS region transcription start site region 47564
Tssr47565 5 103501590 to 103501601 11 + TSS region transcription start site region 47565
Gm42620 5 103513445 to 103533021 19576 - antisense lncRNA gene predicted gene 42620
Tssr47566 5 103516126 to 103516137 11 + TSS region transcription start site region 47566
Tssr47567 5 103557909 to 103557927 18 + TSS region transcription start site region 47567
D5Mit93 5 103584813 to 103585005 192 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 93
Gm23085 5 103602587 to 103602879 292 + unclassified non-coding RNA gene predicted gene, 23085
Slc10a6 5 103605711 to 103629403 23692 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 6
Gm15844 5 103624471 to 103625046 575 + pseudogene predicted gene 15844
Tssr52162 5 103629236 to 103629269 33 - TSS region transcription start site region 52162
Tssr52163 5 103629279 to 103629296 17 - TSS region transcription start site region 52163
Gm43546 5 103635225 to 103636167 942 + unclassified gene predicted gene 43546
Tssr52164 5 103647470 to 103647479 9 - TSS region transcription start site region 52164
Tssr52165 5 103647493 to 103647505 12 - TSS region transcription start site region 52165
1700016H13Rik 5 103648583 to 103655860 7277 - protein coding gene RIKEN cDNA 1700016H13 gene
Cpgi16136 5 103655351 to 103656040 689 CpG island CpG island 16136
Tssr52166 5 103655709 to 103655743 34 - TSS region transcription start site region 52166
Tssr52167 5 103655744 to 103655751 7 - TSS region transcription start site region 52167
Gm42138 5 103656082 to 103666572 10490 + lncRNA gene predicted gene, 42138
Gm25721 5 103658237 to 103658407 170 + snRNA gene predicted gene, 25721
Tssr52168 5 103692064 to 103692065 1 - TSS region transcription start site region 52168
Cpgi16137 5 103692102 to 103693643 1541 CpG island CpG island 16137
Tssr47568 5 103692372 to 103692431 59 + TSS region transcription start site region 47568
Aff1 5 103692374 to 103855322 162948 + protein coding gene AF4/FMR2 family, member 1
Tssr47569 5 103692434 to 103692460 26 + TSS region transcription start site region 47569
Tssr47570 5 103715204 to 103715222 18 + TSS region transcription start site region 47570
Tssr47571 5 103715223 to 103715275 52 + TSS region transcription start site region 47571
Tssr47572 5 103715316 to 103715336 20 + TSS region transcription start site region 47572
Tssr47573 5 103715338 to 103715353 15 + TSS region transcription start site region 47573
Tssr47574 5 103715949 to 103715958 9 + TSS region transcription start site region 47574
Tssr47575 5 103716825 to 103716835 10 + TSS region transcription start site region 47575
Tssr47576 5 103720006 to 103720025 19 + TSS region transcription start site region 47576
Tssr47577 5 103722765 to 103722782 17 + TSS region transcription start site region 47577
Tssr47578 5 103722931 to 103722944 13 + TSS region transcription start site region 47578
Tssr47579 5 103722953 to 103722971 18 + TSS region transcription start site region 47579
Tssr47580 5 103722991 to 103723007 16 + TSS region transcription start site region 47580
Tssr47581 5 103736907 to 103736914 7 + TSS region transcription start site region 47581
Tssr47582 5 103737343 to 103737369 26 + TSS region transcription start site region 47582