Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:102751074-103671101

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgap24 5 102481391 to 102897937 416546 + protein coding gene Rho GTPase activating protein 24
Tssr47535 5 102768711 to 102768722 11 + TSS region transcription start site region 47535
Tssr47536 5 102768804 to 102768815 11 + TSS region transcription start site region 47536
Tssr47537 5 102768869 to 102768889 20 + TSS region transcription start site region 47537
Tssr47538 5 102768895 to 102768927 32 + TSS region transcription start site region 47538
D5Mit364 5 102786802 to 102786904 102 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 364
Tssr1560 5 102796318 to 102796322 4 + TSS region transcription start site region 1560
Tssr47539 5 102824014 to 102824017 3 + TSS region transcription start site region 47539
Tssr47540 5 102841052 to 102841057 5 + TSS region transcription start site region 47540
Tssr47541 5 102845110 to 102845115 5 + TSS region transcription start site region 47541
Tssr47542 5 102845116 to 102845127 11 + TSS region transcription start site region 47542
Tssr47543 5 102845138 to 102845146 8 + TSS region transcription start site region 47543
Tssr47544 5 102845150 to 102845200 50 + TSS region transcription start site region 47544
Tssr47545 5 102845233 to 102845249 16 + TSS region transcription start site region 47545
Cpgi16131 5 102845266 to 102845425 159 CpG island CpG island 16131
Tssr47546 5 102845271 to 102845292 21 + TSS region transcription start site region 47546
Tssr47547 5 102845300 to 102845328 28 + TSS region transcription start site region 47547
Tssr47548 5 102845330 to 102845338 8 + TSS region transcription start site region 47548
Tssr47549 5 102845382 to 102845410 28 + TSS region transcription start site region 47549
Tssr47550 5 102845941 to 102845978 37 + TSS region transcription start site region 47550
Tssr47551 5 102846008 to 102846042 34 + TSS region transcription start site region 47551
Tssr52144 5 102846311 to 102846318 7 - TSS region transcription start site region 52144
Tssr47552 5 102857336 to 102857340 4 + TSS region transcription start site region 47552
Tssr47553 5 102860045 to 102860054 9 + TSS region transcription start site region 47553
Tssr47554 5 102860098 to 102860120 22 + TSS region transcription start site region 47554
D5Mit64 5 102889149 to 102889302 153 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 64
D5Mit64.2 5 102889256 to 102889460 204 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 64.2
Cpgi16132 5 102892533 to 102892831 298 CpG island CpG island 16132
Mapk10 5 102908547 to 103211430 302883 - protein coding gene mitogen-activated protein kinase 10
Tssr52145 5 102911255 to 102911282 27 - TSS region transcription start site region 52145
Tssr52146 5 102913117 to 102913154 37 - TSS region transcription start site region 52146
Tssr52147 5 102913179 to 102913221 42 - TSS region transcription start site region 52147
Gm42522 5 102951818 to 102952072 254 - pseudogene predicted gene 42522
Tssr52148 5 102978480 to 102978483 3 - TSS region transcription start site region 52148
Gm43789 5 102983842 to 102986313 2471 - unclassified gene predicted gene 43789
D5Mit412 5 103014337 to 103014488 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 412
Tssr52149 5 103026928 to 103026971 43 - TSS region transcription start site region 52149
Tssr52150 5 103100054 to 103100088 34 - TSS region transcription start site region 52150
2900063K03Rik 5 103202753 to 103203547 794 unclassified gene RIKEN cDNA 2900063K03 gene
Tssr52151 5 103211074 to 103211101 27 - TSS region transcription start site region 52151
Tssr52152 5 103211109 to 103211128 19 - TSS region transcription start site region 52152
Tssr52153 5 103211236 to 103211245 9 - TSS region transcription start site region 52153
Tssr52154 5 103211251 to 103211321 70 - TSS region transcription start site region 52154
4930429D17Rik 5 103230375 to 103299029 68654 - lincRNA gene RIKEN cDNA 4930429D17 gene
Gm18702 5 103273909 to 103274496 587 + pseudogene predicted gene, 18702
Tssr52155 5 103309703 to 103309739 36 - TSS region transcription start site region 52155
4921523P09Rik 5 103343971 to 103345106 1135 unclassified gene RIKEN cDNA 4921523P09 gene
Gm42619 5 103343972 to 103345107 1135 + unclassified gene predicted gene 42619
1700021F02Rik 5 103346594 to 103348299 1705 + lincRNA gene RIKEN cDNA 1700021F02 gene
Tssr52156 5 103347903 to 103347912 9 - TSS region transcription start site region 52156
5430427N15Rik 5 103354306 to 103356698 2392 - lincRNA gene RIKEN cDNA 5430427N15 gene
Gm30443 5 103359977 to 103360754 777 + lncRNA gene predicted gene, 30443
Cpgi16133 5 103360660 to 103360850 190 CpG island CpG island 16133
Cpgi16134 5 103365413 to 103365588 175 CpG island CpG island 16134
Tssr47555 5 103366374 to 103366378 4 + TSS region transcription start site region 47555
Tssr47556 5 103375445 to 103375448 3 + TSS region transcription start site region 47556
Tssr52157 5 103377260 to 103377294 34 - TSS region transcription start site region 52157
Tssr52158 5 103377312 to 103377329 17 - TSS region transcription start site region 52158
Tssr52159 5 103377332 to 103377338 6 - TSS region transcription start site region 52159
Cpgi16135 5 103424646 to 103426102 1456 CpG island CpG island 16135
Tssr47557 5 103425181 to 103425197 16 + TSS region transcription start site region 47557
Ptpn13 5 103425192 to 103598303 173111 + protein coding gene protein tyrosine phosphatase, non-receptor type 13
Tssr47558 5 103425202 to 103425231 29 + TSS region transcription start site region 47558
Tssr47559 5 103425233 to 103425259 26 + TSS region transcription start site region 47559
Tssr52160 5 103425720 to 103425729 9 - TSS region transcription start site region 52160
Tssr52161 5 103425748 to 103425761 13 - TSS region transcription start site region 52161
Tssr47560 5 103501113 to 103501131 18 + TSS region transcription start site region 47560
Tssr47561 5 103501365 to 103501425 60 + TSS region transcription start site region 47561
Tssr47562 5 103501438 to 103501449 11 + TSS region transcription start site region 47562
Tssr47563 5 103501450 to 103501476 26 + TSS region transcription start site region 47563
Tssr47564 5 103501556 to 103501570 14 + TSS region transcription start site region 47564
Tssr47565 5 103501590 to 103501601 11 + TSS region transcription start site region 47565
Gm42620 5 103513445 to 103533021 19576 - antisense lncRNA gene predicted gene 42620
Tssr47566 5 103516126 to 103516137 11 + TSS region transcription start site region 47566
Tssr47567 5 103557909 to 103557927 18 + TSS region transcription start site region 47567
D5Mit93 5 103584813 to 103585005 192 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 93
Gm23085 5 103602587 to 103602879 292 + unclassified non-coding RNA gene predicted gene, 23085
Slc10a6 5 103605711 to 103629403 23692 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 6
Gm15844 5 103624471 to 103625046 575 + pseudogene predicted gene 15844
Tssr52162 5 103629236 to 103629269 33 - TSS region transcription start site region 52162
Tssr52163 5 103629279 to 103629296 17 - TSS region transcription start site region 52163
Gm43546 5 103635225 to 103636167 942 + unclassified gene predicted gene 43546
Tssr52164 5 103647470 to 103647479 9 - TSS region transcription start site region 52164
Tssr52165 5 103647493 to 103647505 12 - TSS region transcription start site region 52165
1700016H13Rik 5 103648583 to 103655860 7277 - protein coding gene RIKEN cDNA 1700016H13 gene
Cpgi16136 5 103655351 to 103656040 689 CpG island CpG island 16136
Tssr52166 5 103655709 to 103655743 34 - TSS region transcription start site region 52166
Tssr52167 5 103655744 to 103655751 7 - TSS region transcription start site region 52167
Gm42138 5 103656082 to 103666572 10490 + lncRNA gene predicted gene, 42138
Gm25721 5 103658237 to 103658407 170 + snRNA gene predicted gene, 25721