Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:102011374-102951382

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wdfy3 5 101832956 to 102069921 236965 - protein coding gene WD repeat and FYVE domain containing 3
Tssr52136 5 102018389 to 102018393 4 - TSS region transcription start site region 52136
Tssr52137 5 102053018 to 102053033 15 - TSS region transcription start site region 52137
Tssr52138 5 102053039 to 102053087 48 - TSS region transcription start site region 52138
Gm43787 5 102057033 to 102058069 1036 - unclassified gene predicted gene 43787
Cpgi16128 5 102068955 to 102070645 1690 CpG island CpG island 16128
Tssr52139 5 102069905 to 102069940 35 - TSS region transcription start site region 52139
Tssr47510 5 102070062 to 102070105 43 + TSS region transcription start site region 47510
Gm29707 5 102070218 to 102071782 1564 + lincRNA gene predicted gene, 29707
Tssr47511 5 102070839 to 102070850 11 + TSS region transcription start site region 47511
Tssr52140 5 102072135 to 102072204 69 - TSS region transcription start site region 52140
Gm42136 5 102119622 to 102121795 2173 - lncRNA gene predicted gene, 42136
D5Mit276 5 102139540 to 102139680 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 276
Gm17978 5 102159532 to 102160294 762 + pseudogene predicted gene, 17978
Gm42933 5 102162291 to 102164359 2068 + pseudogene predicted gene 42933
Gm46947 5 102175295 to 102178208 2913 + lncRNA gene predicted gene, 46947
Tssr47512 5 102175309 to 102175318 9 + TSS region transcription start site region 47512
Tssr47513 5 102175321 to 102175335 14 + TSS region transcription start site region 47513
Tssr47514 5 102207197 to 102207224 27 + TSS region transcription start site region 47514
Cpgi16129 5 102209319 to 102209610 291 CpG island CpG island 16129
Gm42932 5 102416203 to 102416946 743 + pseudogene predicted gene 42932
Gm6622 5 102416219 to 102425200 8981 - pseudogene predicted gene 6622
1700013M08Rik 5 102474290 to 102483289 8999 - antisense lncRNA gene RIKEN cDNA 1700013M08 gene
Tssr52141 5 102479983 to 102480007 24 - TSS region transcription start site region 52141
Tssr52142 5 102480015 to 102480029 14 - TSS region transcription start site region 52142
Cpgi16130 5 102481283 to 102482171 888 CpG island CpG island 16130
Tssr47515 5 102481346 to 102481357 11 + TSS region transcription start site region 47515
Tssr47516 5 102481374 to 102481382 8 + TSS region transcription start site region 47516
Arhgap24 5 102481391 to 102897937 416546 + protein coding gene Rho GTPase activating protein 24
Tssr47517 5 102481422 to 102481495 73 + TSS region transcription start site region 47517
Tssr47518 5 102481500 to 102481542 42 + TSS region transcription start site region 47518
Tssr47519 5 102481546 to 102481560 14 + TSS region transcription start site region 47519
Tssr47520 5 102481602 to 102481628 26 + TSS region transcription start site region 47520
Tssr47521 5 102481645 to 102481657 12 + TSS region transcription start site region 47521
Tssr47522 5 102481690 to 102481714 24 + TSS region transcription start site region 47522
Tssr47523 5 102481724 to 102481733 9 + TSS region transcription start site region 47523
Tssr47524 5 102481762 to 102481769 7 + TSS region transcription start site region 47524
Tssr47525 5 102481780 to 102481800 20 + TSS region transcription start site region 47525
Tssr52143 5 102502485 to 102502498 13 - TSS region transcription start site region 52143
Gm30396 5 102619644 to 102634857 15213 - lncRNA gene predicted gene, 30396
Tssr47526 5 102669571 to 102669574 3 + TSS region transcription start site region 47526
Tssr47527 5 102691127 to 102691134 7 + TSS region transcription start site region 47527
Tssr47528 5 102695373 to 102695381 8 + TSS region transcription start site region 47528
Tssr47529 5 102704161 to 102704170 9 + TSS region transcription start site region 47529
Tssr47530 5 102718475 to 102718498 23 + TSS region transcription start site region 47530
Tssr47531 5 102724941 to 102724970 29 + TSS region transcription start site region 47531
Tssr47532 5 102724971 to 102724993 22 + TSS region transcription start site region 47532
2900056B19Rik 5 102725131 to 102725832 701 unclassified gene RIKEN cDNA 2900056B19 gene
Tssr47533 5 102725166 to 102725190 24 + TSS region transcription start site region 47533
Tssr47534 5 102727610 to 102727652 42 + TSS region transcription start site region 47534
Tssr47535 5 102768711 to 102768722 11 + TSS region transcription start site region 47535
Tssr47536 5 102768804 to 102768815 11 + TSS region transcription start site region 47536
Tssr47537 5 102768869 to 102768889 20 + TSS region transcription start site region 47537
Tssr47538 5 102768895 to 102768927 32 + TSS region transcription start site region 47538
D5Mit364 5 102786802 to 102786904 102 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 364
Tssr1560 5 102796318 to 102796322 4 + TSS region transcription start site region 1560
Tssr47539 5 102824014 to 102824017 3 + TSS region transcription start site region 47539
Tssr47540 5 102841052 to 102841057 5 + TSS region transcription start site region 47540
Tssr47541 5 102845110 to 102845115 5 + TSS region transcription start site region 47541
Tssr47542 5 102845116 to 102845127 11 + TSS region transcription start site region 47542
Tssr47543 5 102845138 to 102845146 8 + TSS region transcription start site region 47543
Tssr47544 5 102845150 to 102845200 50 + TSS region transcription start site region 47544
Tssr47545 5 102845233 to 102845249 16 + TSS region transcription start site region 47545
Cpgi16131 5 102845266 to 102845425 159 CpG island CpG island 16131
Tssr47546 5 102845271 to 102845292 21 + TSS region transcription start site region 47546
Tssr47547 5 102845300 to 102845328 28 + TSS region transcription start site region 47547
Tssr47548 5 102845330 to 102845338 8 + TSS region transcription start site region 47548
Tssr47549 5 102845382 to 102845410 28 + TSS region transcription start site region 47549
Tssr47550 5 102845941 to 102845978 37 + TSS region transcription start site region 47550
Tssr47551 5 102846008 to 102846042 34 + TSS region transcription start site region 47551
Tssr52144 5 102846311 to 102846318 7 - TSS region transcription start site region 52144
Tssr47552 5 102857336 to 102857340 4 + TSS region transcription start site region 47552
Tssr47553 5 102860045 to 102860054 9 + TSS region transcription start site region 47553
Tssr47554 5 102860098 to 102860120 22 + TSS region transcription start site region 47554
D5Mit64 5 102889149 to 102889302 153 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 64
D5Mit64.2 5 102889256 to 102889460 204 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 64.2
Cpgi16132 5 102892533 to 102892831 298 CpG island CpG island 16132
Mapk10 5 102908547 to 103211430 302883 - protein coding gene mitogen-activated protein kinase 10
Tssr52145 5 102911255 to 102911282 27 - TSS region transcription start site region 52145
Tssr52146 5 102913117 to 102913154 37 - TSS region transcription start site region 52146
Tssr52147 5 102913179 to 102913221 42 - TSS region transcription start site region 52147