Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:101660839-102480850

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nkx6-1 5 101659184 to 101664711 5527 - protein coding gene NK6 homeobox 1
Cpgi16122 5 101661775 to 101662102 327 CpG island CpG island 16122
Cpgi16123 5 101662964 to 101665798 2834 CpG island CpG island 16123
Tssr52127 5 101665195 to 101665211 16 - TSS region transcription start site region 52127
Tssr52128 5 101665247 to 101665254 7 - TSS region transcription start site region 52128
Cpgi16124 5 101666845 to 101667121 276 CpG island CpG island 16124
Cpgi16125 5 101688611 to 101688827 216 CpG island CpG island 16125
Gm42133 5 101698136 to 101700077 1941 - lincRNA gene predicted gene, 42133
Cpgi16126 5 101703521 to 101703752 231 CpG island CpG island 16126
Tssr1559 5 101703578 to 101703615 37 + TSS region transcription start site region 1559
9430085M18Rik 5 101703586 to 101705850 2264 + lincRNA gene RIKEN cDNA 9430085M18 gene
Tssr47498 5 101720778 to 101720782 4 + TSS region transcription start site region 47498
Gm42134 5 101723095 to 101742952 19857 - lncRNA gene predicted gene, 42134
Cpgi16127 5 101764579 to 101765933 1354 CpG island CpG island 16127
Tssr47499 5 101764851 to 101764864 13 + TSS region transcription start site region 47499
Tssr47500 5 101765075 to 101765109 34 + TSS region transcription start site region 47500
Tssr47501 5 101765120 to 101765145 25 + TSS region transcription start site region 47501
Cds1 5 101765130 to 101823858 58728 + protein coding gene CDP-diacylglycerol synthase 1
Tssr47502 5 101765192 to 101765209 17 + TSS region transcription start site region 47502
Tssr47503 5 101765220 to 101765295 75 + TSS region transcription start site region 47503
Tssr47504 5 101765330 to 101765344 14 + TSS region transcription start site region 47504
Gm43273 5 101783078 to 101785671 2593 + unclassified gene predicted gene 43273
Gm43272 5 101810492 to 101812075 1583 + unclassified gene predicted gene 43272
Tssr47505 5 101814486 to 101814524 38 + TSS region transcription start site region 47505
Wdfy3 5 101832956 to 102069921 236965 - protein coding gene WD repeat and FYVE domain containing 3
Tssr52129 5 101835605 to 101835610 5 - TSS region transcription start site region 52129
Gm20548 5 101837416 to 101846410 8994 + antisense lncRNA gene predicted gene 20548
Tssr52130 5 101851488 to 101851495 7 - TSS region transcription start site region 52130
Tssr52131 5 101851500 to 101851505 5 - TSS region transcription start site region 52131
Tssr52132 5 101851507 to 101851517 10 - TSS region transcription start site region 52132
Tssr52133 5 101851523 to 101851537 14 - TSS region transcription start site region 52133
Tssr52134 5 101851542 to 101851552 10 - TSS region transcription start site region 52134
Tssr47506 5 101888187 to 101888198 11 + TSS region transcription start site region 47506
Tssr47507 5 101888220 to 101888231 11 + TSS region transcription start site region 47507
Tssr47508 5 101897930 to 101897931 1 + TSS region transcription start site region 47508
Tssr52135 5 101922579 to 101922629 50 - TSS region transcription start site region 52135
Gm42135 5 101947699 to 101956607 8908 + lncRNA gene predicted gene, 42135
Gm42934 5 101956607 to 101957951 1344 + unclassified gene predicted gene 42934
Tssr47509 5 101968742 to 101968779 37 + TSS region transcription start site region 47509
Tssr52136 5 102018389 to 102018393 4 - TSS region transcription start site region 52136
Tssr52137 5 102053018 to 102053033 15 - TSS region transcription start site region 52137
Tssr52138 5 102053039 to 102053087 48 - TSS region transcription start site region 52138
Gm43787 5 102057033 to 102058069 1036 - unclassified gene predicted gene 43787
Cpgi16128 5 102068955 to 102070645 1690 CpG island CpG island 16128
Tssr52139 5 102069905 to 102069940 35 - TSS region transcription start site region 52139
Tssr47510 5 102070062 to 102070105 43 + TSS region transcription start site region 47510
Gm29707 5 102070218 to 102071782 1564 + lincRNA gene predicted gene, 29707
Tssr47511 5 102070839 to 102070850 11 + TSS region transcription start site region 47511
Tssr52140 5 102072135 to 102072204 69 - TSS region transcription start site region 52140
Gm42136 5 102119622 to 102121795 2173 - lncRNA gene predicted gene, 42136
D5Mit276 5 102139540 to 102139680 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 276
Gm17978 5 102159532 to 102160294 762 + pseudogene predicted gene, 17978
Gm42933 5 102162291 to 102164359 2068 + pseudogene predicted gene 42933
Gm46947 5 102175295 to 102178208 2913 + lncRNA gene predicted gene, 46947
Tssr47512 5 102175309 to 102175318 9 + TSS region transcription start site region 47512
Tssr47513 5 102175321 to 102175335 14 + TSS region transcription start site region 47513
Tssr47514 5 102207197 to 102207224 27 + TSS region transcription start site region 47514
Cpgi16129 5 102209319 to 102209610 291 CpG island CpG island 16129
Gm42932 5 102416203 to 102416946 743 + pseudogene predicted gene 42932
Gm6622 5 102416219 to 102425200 8981 - pseudogene predicted gene 6622
1700013M08Rik 5 102474290 to 102483289 8999 - antisense lncRNA gene RIKEN cDNA 1700013M08 gene
Tssr52141 5 102479983 to 102480007 24 - TSS region transcription start site region 52141
Tssr52142 5 102480015 to 102480029 14 - TSS region transcription start site region 52142