Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:100858396-107178406

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798 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpat3 5 100845713 to 100899102 53389 + protein coding gene glycerol-3-phosphate acyltransferase 3
Tssr47495 5 100862017 to 100862021 4 + TSS region transcription start site region 47495
Gm42987 5 100884133 to 100886482 2349 + unclassified gene predicted gene 42987
Gm36793 5 100910003 to 100913707 3704 - lincRNA gene predicted gene, 36793
Gm36740 5 100913193 to 100921169 7976 + lncRNA gene predicted gene, 36740
Tssr52124 5 100916541 to 100916552 11 - TSS region transcription start site region 52124
Tssr47496 5 100916754 to 100916784 30 + TSS region transcription start site region 47496
n-TDgtc1 5 100992874 to 100992945 71 - tRNA gene nuclear encoded tRNA aspartic acid 1 (anticodon GTC)
4930447E19Rik 5 101032550 to 101033251 701 unclassified gene RIKEN cDNA 4930447E19 gene
D5Mit22.3 5 101060604 to 101060728 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 22.3
D5Mit22 5 101060681 to 101060809 128 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 22
Cpgi16119 5 101082485 to 101082918 433 CpG island CpG island 16119
D5Mit9 5 101112891 to 101113038 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 9
rs 5 101113038 to 35578005 -65535033 heritable phenotypic marker recessive spotting
D5Mit207 5 101184759 to 101184924 165 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 207
Gm36851 5 101226022 to 101239684 13662 - lncRNA gene predicted gene, 36851
Tssr52125 5 101239647 to 101239658 11 - TSS region transcription start site region 52125
Tssr52126 5 101239677 to 101239709 32 - TSS region transcription start site region 52126
Gm3032 5 101264480 to 101268395 3915 + lncRNA gene predicted gene 3032
Cycs-ps2 5 101305578 to 101305869 291 + pseudogene cytochrome c, pseudogene 2
Gm42131 5 101446465 to 101449466 3001 - lncRNA gene predicted gene, 42131
Gm43103 5 101505528 to 101506329 801 - pseudogene predicted gene 43103
D5Mit156 5 101537451 to 101537557 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 156
Gm29982 5 101586427 to 101599253 12826 - lncRNA gene predicted gene, 29982
Gm20484 5 101599314 to 101602375 3061 + lincRNA gene predicted gene 20484
Cpgi16120 5 101647552 to 101648616 1064 CpG island CpG island 16120
Gm42132 5 101650294 to 101657178 6884 - lncRNA gene predicted gene, 42132
Cpgi16121 5 101658928 to 101659923 995 CpG island CpG island 16121
Nkx6-1 5 101659184 to 101664711 5527 - protein coding gene NK6 homeobox 1
Tssr47497 5 101659206 to 101659215 9 + TSS region transcription start site region 47497
Cpgi16122 5 101661775 to 101662102 327 CpG island CpG island 16122
Cpgi16123 5 101662964 to 101665798 2834 CpG island CpG island 16123
Tssr52127 5 101665195 to 101665211 16 - TSS region transcription start site region 52127
Tssr52128 5 101665247 to 101665254 7 - TSS region transcription start site region 52128
Cpgi16124 5 101666845 to 101667121 276 CpG island CpG island 16124
Cpgi16125 5 101688611 to 101688827 216 CpG island CpG island 16125
Gm42133 5 101698136 to 101700077 1941 - lincRNA gene predicted gene, 42133
Cpgi16126 5 101703521 to 101703752 231 CpG island CpG island 16126
Tssr1559 5 101703578 to 101703615 37 + TSS region transcription start site region 1559
9430085M18Rik 5 101703586 to 101705850 2264 + lincRNA gene RIKEN cDNA 9430085M18 gene
Tssr47498 5 101720778 to 101720782 4 + TSS region transcription start site region 47498
Gm42134 5 101723095 to 101742952 19857 - lncRNA gene predicted gene, 42134
Cpgi16127 5 101764579 to 101765933 1354 CpG island CpG island 16127
Tssr47499 5 101764851 to 101764864 13 + TSS region transcription start site region 47499
Tssr47500 5 101765075 to 101765109 34 + TSS region transcription start site region 47500
Tssr47501 5 101765120 to 101765145 25 + TSS region transcription start site region 47501
Cds1 5 101765130 to 101823858 58728 + protein coding gene CDP-diacylglycerol synthase 1
Tssr47502 5 101765192 to 101765209 17 + TSS region transcription start site region 47502
Tssr47503 5 101765220 to 101765295 75 + TSS region transcription start site region 47503
Tssr47504 5 101765330 to 101765344 14 + TSS region transcription start site region 47504
Gm43273 5 101783078 to 101785671 2593 + unclassified gene predicted gene 43273
Gm43272 5 101810492 to 101812075 1583 + unclassified gene predicted gene 43272
Tssr47505 5 101814486 to 101814524 38 + TSS region transcription start site region 47505
Wdfy3 5 101832956 to 102069921 236965 - protein coding gene WD repeat and FYVE domain containing 3
Tssr52129 5 101835605 to 101835610 5 - TSS region transcription start site region 52129
Gm20548 5 101837416 to 101846410 8994 + antisense lncRNA gene predicted gene 20548
Tssr52130 5 101851488 to 101851495 7 - TSS region transcription start site region 52130
Tssr52131 5 101851500 to 101851505 5 - TSS region transcription start site region 52131
Tssr52132 5 101851507 to 101851517 10 - TSS region transcription start site region 52132
Tssr52133 5 101851523 to 101851537 14 - TSS region transcription start site region 52133
Tssr52134 5 101851542 to 101851552 10 - TSS region transcription start site region 52134
Tssr47506 5 101888187 to 101888198 11 + TSS region transcription start site region 47506
Tssr47507 5 101888220 to 101888231 11 + TSS region transcription start site region 47507
Tssr47508 5 101897930 to 101897931 1 + TSS region transcription start site region 47508
Tssr52135 5 101922579 to 101922629 50 - TSS region transcription start site region 52135
Gm42135 5 101947699 to 101956607 8908 + lncRNA gene predicted gene, 42135
Gm42934 5 101956607 to 101957951 1344 + unclassified gene predicted gene 42934
Tssr47509 5 101968742 to 101968779 37 + TSS region transcription start site region 47509
Tssr52136 5 102018389 to 102018393 4 - TSS region transcription start site region 52136
Tssr52137 5 102053018 to 102053033 15 - TSS region transcription start site region 52137
Tssr52138 5 102053039 to 102053087 48 - TSS region transcription start site region 52138
Gm43787 5 102057033 to 102058069 1036 - unclassified gene predicted gene 43787
Cpgi16128 5 102068955 to 102070645 1690 CpG island CpG island 16128
Tssr52139 5 102069905 to 102069940 35 - TSS region transcription start site region 52139
Tssr47510 5 102070062 to 102070105 43 + TSS region transcription start site region 47510
Gm29707 5 102070218 to 102071782 1564 + lincRNA gene predicted gene, 29707
Tssr47511 5 102070839 to 102070850 11 + TSS region transcription start site region 47511
Tssr52140 5 102072135 to 102072204 69 - TSS region transcription start site region 52140
Gm42136 5 102119622 to 102121795 2173 - lncRNA gene predicted gene, 42136
D5Mit276 5 102139540 to 102139680 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 276
Gm17978 5 102159532 to 102160294 762 + pseudogene predicted gene, 17978
Gm42933 5 102162291 to 102164359 2068 + pseudogene predicted gene 42933
Gm46947 5 102175295 to 102178208 2913 + lncRNA gene predicted gene, 46947
Tssr47512 5 102175309 to 102175318 9 + TSS region transcription start site region 47512
Tssr47513 5 102175321 to 102175335 14 + TSS region transcription start site region 47513
Tssr47514 5 102207197 to 102207224 27 + TSS region transcription start site region 47514
Cpgi16129 5 102209319 to 102209610 291 CpG island CpG island 16129
Gm42932 5 102416203 to 102416946 743 + pseudogene predicted gene 42932
Gm6622 5 102416219 to 102425200 8981 - pseudogene predicted gene 6622
1700013M08Rik 5 102474290 to 102483289 8999 - antisense lncRNA gene RIKEN cDNA 1700013M08 gene
Tssr52141 5 102479983 to 102480007 24 - TSS region transcription start site region 52141
Tssr52142 5 102480015 to 102480029 14 - TSS region transcription start site region 52142
Cpgi16130 5 102481283 to 102482171 888 CpG island CpG island 16130
Tssr47515 5 102481346 to 102481357 11 + TSS region transcription start site region 47515
Tssr47516 5 102481374 to 102481382 8 + TSS region transcription start site region 47516
Arhgap24 5 102481391 to 102897937 416546 + protein coding gene Rho GTPase activating protein 24
Tssr47517 5 102481422 to 102481495 73 + TSS region transcription start site region 47517
Tssr47518 5 102481500 to 102481542 42 + TSS region transcription start site region 47518
Tssr47519 5 102481546 to 102481560 14 + TSS region transcription start site region 47519
Tssr47520 5 102481602 to 102481628 26 + TSS region transcription start site region 47520
Tssr47521 5 102481645 to 102481657 12 + TSS region transcription start site region 47521
Tssr47522 5 102481690 to 102481714 24 + TSS region transcription start site region 47522
Tssr47523 5 102481724 to 102481733 9 + TSS region transcription start site region 47523
Tssr47524 5 102481762 to 102481769 7 + TSS region transcription start site region 47524
Tssr47525 5 102481780 to 102481800 20 + TSS region transcription start site region 47525
Tssr52143 5 102502485 to 102502498 13 - TSS region transcription start site region 52143
Gm30396 5 102619644 to 102634857 15213 - lncRNA gene predicted gene, 30396
Tssr47526 5 102669571 to 102669574 3 + TSS region transcription start site region 47526
Tssr47527 5 102691127 to 102691134 7 + TSS region transcription start site region 47527
Tssr47528 5 102695373 to 102695381 8 + TSS region transcription start site region 47528
Tssr47529 5 102704161 to 102704170 9 + TSS region transcription start site region 47529
Tssr47530 5 102718475 to 102718498 23 + TSS region transcription start site region 47530
Tssr47531 5 102724941 to 102724970 29 + TSS region transcription start site region 47531
Tssr47532 5 102724971 to 102724993 22 + TSS region transcription start site region 47532
2900056B19Rik 5 102725131 to 102725832 701 unclassified gene RIKEN cDNA 2900056B19 gene
Tssr47533 5 102725166 to 102725190 24 + TSS region transcription start site region 47533
Tssr47534 5 102727610 to 102727652 42 + TSS region transcription start site region 47534
Tssr47535 5 102768711 to 102768722 11 + TSS region transcription start site region 47535
Tssr47536 5 102768804 to 102768815 11 + TSS region transcription start site region 47536
Tssr47537 5 102768869 to 102768889 20 + TSS region transcription start site region 47537
Tssr47538 5 102768895 to 102768927 32 + TSS region transcription start site region 47538
D5Mit364 5 102786802 to 102786904 102 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 364
Tssr1560 5 102796318 to 102796322 4 + TSS region transcription start site region 1560
Tssr47539 5 102824014 to 102824017 3 + TSS region transcription start site region 47539
Tssr47540 5 102841052 to 102841057 5 + TSS region transcription start site region 47540
Tssr47541 5 102845110 to 102845115 5 + TSS region transcription start site region 47541
Tssr47542 5 102845116 to 102845127 11 + TSS region transcription start site region 47542
Tssr47543 5 102845138 to 102845146 8 + TSS region transcription start site region 47543
Tssr47544 5 102845150 to 102845200 50 + TSS region transcription start site region 47544
Tssr47545 5 102845233 to 102845249 16 + TSS region transcription start site region 47545
Cpgi16131 5 102845266 to 102845425 159 CpG island CpG island 16131
Tssr47546 5 102845271 to 102845292 21 + TSS region transcription start site region 47546
Tssr47547 5 102845300 to 102845328 28 + TSS region transcription start site region 47547
Tssr47548 5 102845330 to 102845338 8 + TSS region transcription start site region 47548
Tssr47549 5 102845382 to 102845410 28 + TSS region transcription start site region 47549
Tssr47550 5 102845941 to 102845978 37 + TSS region transcription start site region 47550
Tssr47551 5 102846008 to 102846042 34 + TSS region transcription start site region 47551
Tssr52144 5 102846311 to 102846318 7 - TSS region transcription start site region 52144
Tssr47552 5 102857336 to 102857340 4 + TSS region transcription start site region 47552
Tssr47553 5 102860045 to 102860054 9 + TSS region transcription start site region 47553
Tssr47554 5 102860098 to 102860120 22 + TSS region transcription start site region 47554
D5Mit64 5 102889149 to 102889302 153 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 64
D5Mit64.2 5 102889256 to 102889460 204 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 64.2
Cpgi16132 5 102892533 to 102892831 298 CpG island CpG island 16132
Mapk10 5 102908547 to 103211430 302883 - protein coding gene mitogen-activated protein kinase 10
Tssr52145 5 102911255 to 102911282 27 - TSS region transcription start site region 52145
Tssr52146 5 102913117 to 102913154 37 - TSS region transcription start site region 52146
Tssr52147 5 102913179 to 102913221 42 - TSS region transcription start site region 52147
Gm42522 5 102951818 to 102952072 254 - pseudogene predicted gene 42522
Tssr52148 5 102978480 to 102978483 3 - TSS region transcription start site region 52148
Gm43789 5 102983842 to 102986313 2471 - unclassified gene predicted gene 43789
D5Mit412 5 103014337 to 103014488 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 412
Tssr52149 5 103026928 to 103026971 43 - TSS region transcription start site region 52149
Tssr52150 5 103100054 to 103100088 34 - TSS region transcription start site region 52150
2900063K03Rik 5 103202753 to 103203547 794 unclassified gene RIKEN cDNA 2900063K03 gene
Tssr52151 5 103211074 to 103211101 27 - TSS region transcription start site region 52151
Tssr52152 5 103211109 to 103211128 19 - TSS region transcription start site region 52152
Tssr52153 5 103211236 to 103211245 9 - TSS region transcription start site region 52153
Tssr52154 5 103211251 to 103211321 70 - TSS region transcription start site region 52154
4930429D17Rik 5 103230375 to 103299029 68654 - lincRNA gene RIKEN cDNA 4930429D17 gene
Gm18702 5 103273909 to 103274496 587 + pseudogene predicted gene, 18702
Tssr52155 5 103309703 to 103309739 36 - TSS region transcription start site region 52155
4921523P09Rik 5 103343971 to 103345106 1135 unclassified gene RIKEN cDNA 4921523P09 gene
Gm42619 5 103343972 to 103345107 1135 + unclassified gene predicted gene 42619
1700021F02Rik 5 103346594 to 103348299 1705 + lincRNA gene RIKEN cDNA 1700021F02 gene
Tssr52156 5 103347903 to 103347912 9 - TSS region transcription start site region 52156
5430427N15Rik 5 103354306 to 103356698 2392 - lincRNA gene RIKEN cDNA 5430427N15 gene
Gm30443 5 103359977 to 103360754 777 + lncRNA gene predicted gene, 30443
Cpgi16133 5 103360660 to 103360850 190 CpG island CpG island 16133
Cpgi16134 5 103365413 to 103365588 175 CpG island CpG island 16134
Tssr47555 5 103366374 to 103366378 4 + TSS region transcription start site region 47555
Tssr47556 5 103375445 to 103375448 3 + TSS region transcription start site region 47556
Tssr52157 5 103377260 to 103377294 34 - TSS region transcription start site region 52157
Tssr52158 5 103377312 to 103377329 17 - TSS region transcription start site region 52158
Tssr52159 5 103377332 to 103377338 6 - TSS region transcription start site region 52159
Cpgi16135 5 103424646 to 103426102 1456 CpG island CpG island 16135
Tssr47557 5 103425181 to 103425197 16 + TSS region transcription start site region 47557
Ptpn13 5 103425192 to 103598303 173111 + protein coding gene protein tyrosine phosphatase, non-receptor type 13
Tssr47558 5 103425202 to 103425231 29 + TSS region transcription start site region 47558
Tssr47559 5 103425233 to 103425259 26 + TSS region transcription start site region 47559
Tssr52160 5 103425720 to 103425729 9 - TSS region transcription start site region 52160
Tssr52161 5 103425748 to 103425761 13 - TSS region transcription start site region 52161
Tssr47560 5 103501113 to 103501131 18 + TSS region transcription start site region 47560
Tssr47561 5 103501365 to 103501425 60 + TSS region transcription start site region 47561
Tssr47562 5 103501438 to 103501449 11 + TSS region transcription start site region 47562
Tssr47563 5 103501450 to 103501476 26 + TSS region transcription start site region 47563
Tssr47564 5 103501556 to 103501570 14 + TSS region transcription start site region 47564
Tssr47565 5 103501590 to 103501601 11 + TSS region transcription start site region 47565
Gm42620 5 103513445 to 103533021 19576 - antisense lncRNA gene predicted gene 42620
Tssr47566 5 103516126 to 103516137 11 + TSS region transcription start site region 47566
Tssr47567 5 103557909 to 103557927 18 + TSS region transcription start site region 47567
D5Mit93 5 103584813 to 103585005 192 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 93
Gm23085 5 103602587 to 103602879 292 + unclassified non-coding RNA gene predicted gene, 23085
Slc10a6 5 103605711 to 103629403 23692 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 6
Gm15844 5 103624471 to 103625046 575 + pseudogene predicted gene 15844
Tssr52162 5 103629236 to 103629269 33 - TSS region transcription start site region 52162
Tssr52163 5 103629279 to 103629296 17 - TSS region transcription start site region 52163
Gm43546 5 103635225 to 103636167 942 + unclassified gene predicted gene 43546
Tssr52164 5 103647470 to 103647479 9 - TSS region transcription start site region 52164
Tssr52165 5 103647493 to 103647505 12 - TSS region transcription start site region 52165