Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:100741022-101724684

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36619 5 100727099 to 100754285 27186 + lncRNA gene predicted gene, 36619
Helq 5 100762145 to 100798598 36453 - protein coding gene helicase, POLQ-like
Cpgi16116 5 100798050 to 100799018 968 CpG island CpG island 16116
Tssr52117 5 100798532 to 100798549 17 - TSS region transcription start site region 52117
Tssr52118 5 100798567 to 100798610 43 - TSS region transcription start site region 52118
Tssr47489 5 100798735 to 100798770 35 + TSS region transcription start site region 47489
Gm43511 5 100798749 to 100801045 2296 + unclassified gene predicted gene 43511
Mrps18c 5 100798759 to 100804467 5708 + protein coding gene mitochondrial ribosomal protein S18C
Abraxas1 5 100805192 to 100820965 15773 - protein coding gene BRCA1 A complex subunit
Tssr52119 5 100813495 to 100813538 43 - TSS region transcription start site region 52119
Gm43513 5 100814210 to 100815285 1075 - unclassified gene predicted gene 43513
Cpgi16117 5 100820214 to 100821159 945 CpG island CpG island 16117
Gm43514 5 100820330 to 100820753 423 - sense intronic lncRNA gene predicted gene 43514
Tssr52120 5 100820352 to 100820355 3 - TSS region transcription start site region 52120
Tssr52121 5 100820929 to 100820975 46 - TSS region transcription start site region 52121
Gm26286 5 100831281 to 100831414 133 + snoRNA gene predicted gene, 26286
4930458D05Rik 5 100840797 to 100847167 6370 - antisense lncRNA gene RIKEN cDNA 4930458D05 gene
Cpgi16118 5 100845441 to 100847003 1562 CpG island CpG island 16118
Tssr47490 5 100845709 to 100845728 19 + TSS region transcription start site region 47490
Gpat3 5 100845713 to 100899102 53389 + protein coding gene glycerol-3-phosphate acyltransferase 3
Tssr52122 5 100845736 to 100845743 7 - TSS region transcription start site region 52122
Tssr47491 5 100845874 to 100845882 8 + TSS region transcription start site region 47491
Tssr52123 5 100846092 to 100846130 38 - TSS region transcription start site region 52123
Tssr47492 5 100846278 to 100846293 15 + TSS region transcription start site region 47492
Tssr47493 5 100846417 to 100846449 32 + TSS region transcription start site region 47493
Tssr47494 5 100846450 to 100846508 58 + TSS region transcription start site region 47494
Gm46917 5 100847559 to 100848964 1405 + lncRNA gene predicted gene, 46917
Tssr47495 5 100862017 to 100862021 4 + TSS region transcription start site region 47495
Gm42987 5 100884133 to 100886482 2349 + unclassified gene predicted gene 42987
Gm36793 5 100910003 to 100913707 3704 - lincRNA gene predicted gene, 36793
Gm36740 5 100913193 to 100921169 7976 + lncRNA gene predicted gene, 36740
Tssr52124 5 100916541 to 100916552 11 - TSS region transcription start site region 52124
Tssr47496 5 100916754 to 100916784 30 + TSS region transcription start site region 47496
n-TDgtc1 5 100992874 to 100992945 71 - tRNA gene nuclear encoded tRNA aspartic acid 1 (anticodon GTC)
4930447E19Rik 5 101032550 to 101033251 701 unclassified gene RIKEN cDNA 4930447E19 gene
D5Mit22.3 5 101060604 to 101060728 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 22.3
D5Mit22 5 101060681 to 101060809 128 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 22
Cpgi16119 5 101082485 to 101082918 433 CpG island CpG island 16119
D5Mit9 5 101112891 to 101113038 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 9
rs 5 101113038 to 35578005 -65535033 heritable phenotypic marker recessive spotting
D5Mit207 5 101184759 to 101184924 165 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 207
Gm36851 5 101226022 to 101239684 13662 - lncRNA gene predicted gene, 36851
Tssr52125 5 101239647 to 101239658 11 - TSS region transcription start site region 52125
Tssr52126 5 101239677 to 101239709 32 - TSS region transcription start site region 52126
Gm3032 5 101264480 to 101268395 3915 + lncRNA gene predicted gene 3032
Cycs-ps2 5 101305578 to 101305869 291 + pseudogene cytochrome c, pseudogene 2
Gm42131 5 101446465 to 101449466 3001 - lncRNA gene predicted gene, 42131
Gm43103 5 101505528 to 101506329 801 - pseudogene predicted gene 43103
D5Mit156 5 101537451 to 101537557 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 156
Gm29982 5 101586427 to 101599253 12826 - lncRNA gene predicted gene, 29982
Gm20484 5 101599314 to 101602375 3061 + lincRNA gene predicted gene 20484
Cpgi16120 5 101647552 to 101648616 1064 CpG island CpG island 16120
Gm42132 5 101650294 to 101657178 6884 - lncRNA gene predicted gene, 42132
Cpgi16121 5 101658928 to 101659923 995 CpG island CpG island 16121
Nkx6-1 5 101659184 to 101664711 5527 - protein coding gene NK6 homeobox 1
Tssr47497 5 101659206 to 101659215 9 + TSS region transcription start site region 47497
Cpgi16122 5 101661775 to 101662102 327 CpG island CpG island 16122
Cpgi16123 5 101662964 to 101665798 2834 CpG island CpG island 16123
Tssr52127 5 101665195 to 101665211 16 - TSS region transcription start site region 52127
Tssr52128 5 101665247 to 101665254 7 - TSS region transcription start site region 52128
Cpgi16124 5 101666845 to 101667121 276 CpG island CpG island 16124
Cpgi16125 5 101688611 to 101688827 216 CpG island CpG island 16125
Gm42133 5 101698136 to 101700077 1941 - lincRNA gene predicted gene, 42133
Cpgi16126 5 101703521 to 101703752 231 CpG island CpG island 16126
Tssr1559 5 101703578 to 101703615 37 + TSS region transcription start site region 1559
9430085M18Rik 5 101703586 to 101705850 2264 + lincRNA gene RIKEN cDNA 9430085M18 gene
Tssr47498 5 101720778 to 101720782 4 + TSS region transcription start site region 47498
Gm42134 5 101723095 to 101742952 19857 - lncRNA gene predicted gene, 42134