Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:100336022-102129684

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16107 5 100354713 to 100355201 488 CpG island CpG island 16107
Sec31a 5 100361649 to 100416234 54585 - protein coding gene Sec31 homolog A (S. cerevisiae)
Tssr52083 5 100373506 to 100373527 21 - TSS region transcription start site region 52083
Tssr52084 5 100379157 to 100379162 5 - TSS region transcription start site region 52084
Tssr52085 5 100383982 to 100383993 11 - TSS region transcription start site region 52085
Tssr52086 5 100414657 to 100414662 5 - TSS region transcription start site region 52086
Cpgi16108 5 100415782 to 100416687 905 CpG island CpG island 16108
Tssr52087 5 100416085 to 100416109 24 - TSS region transcription start site region 52087
Tssr52088 5 100416115 to 100416282 167 - TSS region transcription start site region 52088
Tssr52089 5 100416553 to 100416581 28 - TSS region transcription start site region 52089
5430416N02Rik 5 100420842 to 100429535 8693 - lincRNA gene RIKEN cDNA 5430416N02 gene
Gm27553 5 100421968 to 100422041 73 + unclassified non-coding RNA gene predicted gene, 27553
Gm27997 5 100426736 to 100426804 68 + unclassified non-coding RNA gene predicted gene, 27997
Cpgi16109 5 100428960 to 100430060 1100 CpG island CpG island 16109
Gm28030 5 100429101 to 100429238 137 + unclassified non-coding RNA gene predicted gene, 28030
Gm27286 5 100429329 to 100429507 178 + unclassified non-coding RNA gene predicted gene, 27286
Tssr52090 5 100429452 to 100429465 13 - TSS region transcription start site region 52090
Tssr52091 5 100429491 to 100429502 11 - TSS region transcription start site region 52091
Tssr52092 5 100429503 to 100429523 20 - TSS region transcription start site region 52092
Tssr52093 5 100429531 to 100429547 16 - TSS region transcription start site region 52093
Tssr47479 5 100429706 to 100429748 42 + TSS region transcription start site region 47479
Gm42690 5 100429726 to 100431561 1835 + unclassified gene predicted gene 42690
Lin54 5 100442033 to 100500649 58616 - protein coding gene lin-54 homolog (C. elegans)
Cpgi16110 5 100498301 to 100499021 720 CpG island CpG island 16110
Cpgi16111 5 100499846 to 100500985 1139 CpG island CpG island 16111
Tssr52094 5 100500002 to 100500032 30 - TSS region transcription start site region 52094
Gm23222 5 100500143 to 100500218 75 - miRNA gene predicted gene, 23222
Tssr52095 5 100500586 to 100500597 11 - TSS region transcription start site region 52095
Tssr52096 5 100500600 to 100500616 16 - TSS region transcription start site region 52096
Tssr52097 5 100500621 to 100500657 36 - TSS region transcription start site region 52097
D5Mit402 5 100509248 to 100509371 123 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 402
Gm19620 5 100513187 to 100513620 433 - pseudogene predicted gene, 19620
Gm23173 5 100517284 to 100517443 159 - snRNA gene predicted gene, 23173
Cpgi16112 5 100518073 to 100519063 990 CpG island CpG island 16112
Cops4 5 100518309 to 100547802 29493 + protein coding gene COP9 signalosome subunit 4
Tssr47480 5 100518358 to 100518369 11 + TSS region transcription start site region 47480
Tssr47481 5 100518412 to 100518474 62 + TSS region transcription start site region 47481
Plac8 5 100553725 to 100572245 18520 - protein coding gene placenta-specific 8
Tssr47482 5 100553729 to 100553735 6 + TSS region transcription start site region 47482
Tssr52098 5 100562761 to 100562769 8 - TSS region transcription start site region 52098
Tssr52099 5 100562796 to 100562818 22 - TSS region transcription start site region 52099
Tssr52100 5 100562836 to 100562858 22 - TSS region transcription start site region 52100
Tssr52101 5 100562866 to 100562880 14 - TSS region transcription start site region 52101
Tssr52102 5 100563010 to 100563013 3 - TSS region transcription start site region 52102
Tssr52103 5 100564730 to 100564733 3 - TSS region transcription start site region 52103
Tssr52104 5 100565080 to 100565085 5 - TSS region transcription start site region 52104
Tssr47483 5 100569520 to 100569533 13 + TSS region transcription start site region 47483
Tssr47484 5 100570232 to 100570249 17 + TSS region transcription start site region 47484
Tssr52105 5 100572081 to 100572114 33 - TSS region transcription start site region 52105
Tssr52106 5 100572168 to 100572179 11 - TSS region transcription start site region 52106
Tssr52107 5 100572192 to 100572211 19 - TSS region transcription start site region 52107
Tssr47485 5 100583407 to 100583443 36 + TSS region transcription start site region 47485
Gm43510 5 100592404 to 100592756 352 - pseudogene predicted gene 43510
Tssr52108 5 100593643 to 100593644 1 - TSS region transcription start site region 52108
Tssr52109 5 100595222 to 100595270 48 - TSS region transcription start site region 52109
Tssr52110 5 100599263 to 100599268 5 - TSS region transcription start site region 52110
Tssr52111 5 100604195 to 100604229 34 - TSS region transcription start site region 52111
D5Mit157 5 100629942 to 100630065 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 157
W10q16 5 100630065 to 31975890 -68654175 QTL weight 10 weeks QTL 16
Lgq6 5 100630065 to 31975890 -68654175 QTL late growth QTL 6
Tssr52112 5 100643212 to 100643252 40 - TSS region transcription start site region 52112
Tssr47486 5 100643356 to 100643368 12 + TSS region transcription start site region 47486
Tssr1557 5 100650489 to 100650512 23 + TSS region transcription start site region 1557
Tssr47487 5 100650541 to 100650553 12 + TSS region transcription start site region 47487
Tssr47488 5 100650636 to 100650644 8 + TSS region transcription start site region 47488
Coq2 5 100654723 to 100674289 19566 - protein coding gene coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
Tssr1558 5 100660900 to 100660902 2 + TSS region transcription start site region 1558
D5Mit208 5 100667184 to 100667310 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 208
Gm15777 5 100670859 to 100678105 7246 + antisense lncRNA gene predicted gene 15777
Cpgi16113 5 100673707 to 100674445 738 CpG island CpG island 16113
Tssr52113 5 100674230 to 100674281 51 - TSS region transcription start site region 52113
Hpse 5 100679486 to 100719683 40197 - protein coding gene heparanase
Tssr52114 5 100680069 to 100680105 36 - TSS region transcription start site region 52114
Cpgi16114 5 100719260 to 100719977 717 CpG island CpG island 16114
Tssr52115 5 100719663 to 100719674 11 - TSS region transcription start site region 52115
Tssr52116 5 100719675 to 100719706 31 - TSS region transcription start site region 52116
Gm36619 5 100727099 to 100754285 27186 + lncRNA gene predicted gene, 36619
Cpgi16115 5 100728875 to 100729029 154 CpG island CpG island 16115
Helq 5 100762145 to 100798598 36453 - protein coding gene helicase, POLQ-like
Cpgi16116 5 100798050 to 100799018 968 CpG island CpG island 16116
Tssr52117 5 100798532 to 100798549 17 - TSS region transcription start site region 52117
Tssr52118 5 100798567 to 100798610 43 - TSS region transcription start site region 52118
Tssr47489 5 100798735 to 100798770 35 + TSS region transcription start site region 47489
Gm43511 5 100798749 to 100801045 2296 + unclassified gene predicted gene 43511
Mrps18c 5 100798759 to 100804467 5708 + protein coding gene mitochondrial ribosomal protein S18C
Abraxas1 5 100805192 to 100820965 15773 - protein coding gene BRCA1 A complex subunit
Tssr52119 5 100813495 to 100813538 43 - TSS region transcription start site region 52119
Gm43513 5 100814210 to 100815285 1075 - unclassified gene predicted gene 43513
Cpgi16117 5 100820214 to 100821159 945 CpG island CpG island 16117
Gm43514 5 100820330 to 100820753 423 - sense intronic lncRNA gene predicted gene 43514
Tssr52120 5 100820352 to 100820355 3 - TSS region transcription start site region 52120
Tssr52121 5 100820929 to 100820975 46 - TSS region transcription start site region 52121
Gm26286 5 100831281 to 100831414 133 + snoRNA gene predicted gene, 26286
4930458D05Rik 5 100840797 to 100847167 6370 - antisense lncRNA gene RIKEN cDNA 4930458D05 gene
Cpgi16118 5 100845441 to 100847003 1562 CpG island CpG island 16118
Tssr47490 5 100845709 to 100845728 19 + TSS region transcription start site region 47490
Gpat3 5 100845713 to 100899102 53389 + protein coding gene glycerol-3-phosphate acyltransferase 3
Tssr52122 5 100845736 to 100845743 7 - TSS region transcription start site region 52122
Tssr47491 5 100845874 to 100845882 8 + TSS region transcription start site region 47491
Tssr52123 5 100846092 to 100846130 38 - TSS region transcription start site region 52123
Tssr47492 5 100846278 to 100846293 15 + TSS region transcription start site region 47492
Tssr47493 5 100846417 to 100846449 32 + TSS region transcription start site region 47493
Tssr47494 5 100846450 to 100846508 58 + TSS region transcription start site region 47494
Gm46917 5 100847559 to 100848964 1405 + lncRNA gene predicted gene, 46917
Tssr47495 5 100862017 to 100862021 4 + TSS region transcription start site region 47495
Gm42987 5 100884133 to 100886482 2349 + unclassified gene predicted gene 42987
Gm36793 5 100910003 to 100913707 3704 - lincRNA gene predicted gene, 36793
Gm36740 5 100913193 to 100921169 7976 + lncRNA gene predicted gene, 36740
Tssr52124 5 100916541 to 100916552 11 - TSS region transcription start site region 52124
Tssr47496 5 100916754 to 100916784 30 + TSS region transcription start site region 47496
n-TDgtc1 5 100992874 to 100992945 71 - tRNA gene nuclear encoded tRNA aspartic acid 1 (anticodon GTC)
4930447E19Rik 5 101032550 to 101033251 701 unclassified gene RIKEN cDNA 4930447E19 gene
D5Mit22.3 5 101060604 to 101060728 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 22.3
D5Mit22 5 101060681 to 101060809 128 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 22
Cpgi16119 5 101082485 to 101082918 433 CpG island CpG island 16119
D5Mit9 5 101112891 to 101113038 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 9
rs 5 101113038 to 35578005 -65535033 heritable phenotypic marker recessive spotting
D5Mit207 5 101184759 to 101184924 165 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 207
Gm36851 5 101226022 to 101239684 13662 - lncRNA gene predicted gene, 36851
Tssr52125 5 101239647 to 101239658 11 - TSS region transcription start site region 52125
Tssr52126 5 101239677 to 101239709 32 - TSS region transcription start site region 52126
Gm3032 5 101264480 to 101268395 3915 + lncRNA gene predicted gene 3032
Cycs-ps2 5 101305578 to 101305869 291 + pseudogene cytochrome c, pseudogene 2
Gm42131 5 101446465 to 101449466 3001 - lncRNA gene predicted gene, 42131
Gm43103 5 101505528 to 101506329 801 - pseudogene predicted gene 43103
D5Mit156 5 101537451 to 101537557 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 156
Gm29982 5 101586427 to 101599253 12826 - lncRNA gene predicted gene, 29982
Gm20484 5 101599314 to 101602375 3061 + lincRNA gene predicted gene 20484
Cpgi16120 5 101647552 to 101648616 1064 CpG island CpG island 16120
Gm42132 5 101650294 to 101657178 6884 - lncRNA gene predicted gene, 42132
Cpgi16121 5 101658928 to 101659923 995 CpG island CpG island 16121
Nkx6-1 5 101659184 to 101664711 5527 - protein coding gene NK6 homeobox 1
Tssr47497 5 101659206 to 101659215 9 + TSS region transcription start site region 47497
Cpgi16122 5 101661775 to 101662102 327 CpG island CpG island 16122
Cpgi16123 5 101662964 to 101665798 2834 CpG island CpG island 16123
Tssr52127 5 101665195 to 101665211 16 - TSS region transcription start site region 52127
Tssr52128 5 101665247 to 101665254 7 - TSS region transcription start site region 52128
Cpgi16124 5 101666845 to 101667121 276 CpG island CpG island 16124
Cpgi16125 5 101688611 to 101688827 216 CpG island CpG island 16125
Gm42133 5 101698136 to 101700077 1941 - lincRNA gene predicted gene, 42133
Cpgi16126 5 101703521 to 101703752 231 CpG island CpG island 16126
Tssr1559 5 101703578 to 101703615 37 + TSS region transcription start site region 1559
9430085M18Rik 5 101703586 to 101705850 2264 + lincRNA gene RIKEN cDNA 9430085M18 gene
Tssr47498 5 101720778 to 101720782 4 + TSS region transcription start site region 47498
Gm42134 5 101723095 to 101742952 19857 - lncRNA gene predicted gene, 42134
Cpgi16127 5 101764579 to 101765933 1354 CpG island CpG island 16127
Tssr47499 5 101764851 to 101764864 13 + TSS region transcription start site region 47499
Tssr47500 5 101765075 to 101765109 34 + TSS region transcription start site region 47500
Tssr47501 5 101765120 to 101765145 25 + TSS region transcription start site region 47501
Cds1 5 101765130 to 101823858 58728 + protein coding gene CDP-diacylglycerol synthase 1
Tssr47502 5 101765192 to 101765209 17 + TSS region transcription start site region 47502
Tssr47503 5 101765220 to 101765295 75 + TSS region transcription start site region 47503
Tssr47504 5 101765330 to 101765344 14 + TSS region transcription start site region 47504
Gm43273 5 101783078 to 101785671 2593 + unclassified gene predicted gene 43273
Gm43272 5 101810492 to 101812075 1583 + unclassified gene predicted gene 43272
Tssr47505 5 101814486 to 101814524 38 + TSS region transcription start site region 47505
Wdfy3 5 101832956 to 102069921 236965 - protein coding gene WD repeat and FYVE domain containing 3
Tssr52129 5 101835605 to 101835610 5 - TSS region transcription start site region 52129
Gm20548 5 101837416 to 101846410 8994 + antisense lncRNA gene predicted gene 20548
Tssr52130 5 101851488 to 101851495 7 - TSS region transcription start site region 52130
Tssr52131 5 101851500 to 101851505 5 - TSS region transcription start site region 52131
Tssr52132 5 101851507 to 101851517 10 - TSS region transcription start site region 52132
Tssr52133 5 101851523 to 101851537 14 - TSS region transcription start site region 52133
Tssr52134 5 101851542 to 101851552 10 - TSS region transcription start site region 52134
Tssr47506 5 101888187 to 101888198 11 + TSS region transcription start site region 47506
Tssr47507 5 101888220 to 101888231 11 + TSS region transcription start site region 47507
Tssr47508 5 101897930 to 101897931 1 + TSS region transcription start site region 47508
Tssr52135 5 101922579 to 101922629 50 - TSS region transcription start site region 52135
Gm42135 5 101947699 to 101956607 8908 + lncRNA gene predicted gene, 42135
Gm42934 5 101956607 to 101957951 1344 + unclassified gene predicted gene 42934
Tssr47509 5 101968742 to 101968779 37 + TSS region transcription start site region 47509
Tssr52136 5 102018389 to 102018393 4 - TSS region transcription start site region 52136
Tssr52137 5 102053018 to 102053033 15 - TSS region transcription start site region 52137
Tssr52138 5 102053039 to 102053087 48 - TSS region transcription start site region 52138
Gm43787 5 102057033 to 102058069 1036 - unclassified gene predicted gene 43787
Cpgi16128 5 102068955 to 102070645 1690 CpG island CpG island 16128
Tssr52139 5 102069905 to 102069940 35 - TSS region transcription start site region 52139
Tssr47510 5 102070062 to 102070105 43 + TSS region transcription start site region 47510
Gm29707 5 102070218 to 102071782 1564 + lincRNA gene predicted gene, 29707
Tssr47511 5 102070839 to 102070850 11 + TSS region transcription start site region 47511
Tssr52140 5 102072135 to 102072204 69 - TSS region transcription start site region 52140
Gm42136 5 102119622 to 102121795 2173 - lncRNA gene predicted gene, 42136