Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:100008506-100738527

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit90 5 100023113 to 100023227 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 90
Hnrnpdl 5 100033577 to 100039664 6087 - protein coding gene heterogeneous nuclear ribonucleoprotein D-like
Tssr52067 5 100037642 to 100037663 21 - TSS region transcription start site region 52067
Tssr52068 5 100038160 to 100038164 4 - TSS region transcription start site region 52068
Cpgi16103 5 100038241 to 100040692 2451 CpG island CpG island 16103
Tssr52069 5 100038874 to 100038885 11 - TSS region transcription start site region 52069
Tssr52070 5 100038902 to 100038919 17 - TSS region transcription start site region 52070
Tssr52071 5 100039609 to 100039621 12 - TSS region transcription start site region 52071
Tssr52072 5 100039622 to 100039657 35 - TSS region transcription start site region 52072
Tssr52073 5 100039824 to 100039888 64 - TSS region transcription start site region 52073
Tssr52074 5 100039892 to 100039903 11 - TSS region transcription start site region 52074
Enoph1 5 100039985 to 100068760 28775 + protein coding gene enolase-phosphatase 1
Tssr47475 5 100039990 to 100040069 79 + TSS region transcription start site region 47475
Lfibq15 5 100048615 to 99002935 -1045680 QTL liver fibrosis QTL 15
Gm26363 5 100056909 to 100056991 82 - snoRNA gene predicted gene, 26363
Tmem150c 5 100077872 to 100159808 81936 - protein coding gene transmembrane protein 150C
Tssr47476 5 100077890 to 100077922 32 + TSS region transcription start site region 47476
Tmem150cos 5 100077962 to 100095273 17311 + antisense lncRNA gene transmembrane protein 150C, opposite strand
Cpgi16104 5 100079055 to 100079864 809 CpG island CpG island 16104
Gm36167 5 100108795 to 100115661 6866 + lncRNA gene predicted gene, 36167
D5Mit411 5 100115097 to 100115312 215 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 411
Cpgi16105 5 100120752 to 100121060 308 CpG island CpG island 16105
Tssr52075 5 100147090 to 100147099 9 - TSS region transcription start site region 52075
Cpgi16106 5 100158387 to 100159812 1425 CpG island CpG island 16106
Tssr52076 5 100159261 to 100159314 53 - TSS region transcription start site region 52076
Tssr52077 5 100159390 to 100159435 45 - TSS region transcription start site region 52077
Tssr52078 5 100159548 to 100159579 31 - TSS region transcription start site region 52078
Tssr52079 5 100165523 to 100165564 41 - TSS region transcription start site region 52079
Tssr52080 5 100165574 to 100165598 24 - TSS region transcription start site region 52080
Gm9932 5 100196611 to 100200724 4113 + lincRNA gene predicted gene 9932
Tssr47477 5 100205923 to 100205949 26 + TSS region transcription start site region 47477
Tssr47478 5 100210689 to 100210698 9 + TSS region transcription start site region 47478
2310034O05Rik 5 100210692 to 100218049 7357 + lincRNA gene RIKEN cDNA 2310034O05 gene
Gm36304 5 100212586 to 100217747 5161 - lncRNA gene predicted gene, 36304
Tssr52081 5 100217941 to 100217946 5 - TSS region transcription start site region 52081
Gm8091 5 100220418 to 100295515 75097 - pseudogene predicted gene 8091
Tssr52082 5 100237488 to 100237517 29 - TSS region transcription start site region 52082
Gm42129 5 100279725 to 100289553 9828 + lncRNA gene predicted gene, 42129
Gm42128 5 100291779 to 100292261 482 + lncRNA gene predicted gene, 42128
Gm45913 5 100302252 to 100307249 4997 + unclassified gene predicted gene, 45913
D5Mit89 5 100307520 to 100307666 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 89
Bmd2 5 100307666 to 55230992 -45076674 QTL bone mineral density 2
D5Mit172 5 100321045 to 100321189 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 172
Cpgi16107 5 100354713 to 100355201 488 CpG island CpG island 16107
Sec31a 5 100361649 to 100416234 54585 - protein coding gene Sec31 homolog A (S. cerevisiae)
Tssr52083 5 100373506 to 100373527 21 - TSS region transcription start site region 52083
Tssr52084 5 100379157 to 100379162 5 - TSS region transcription start site region 52084
Tssr52085 5 100383982 to 100383993 11 - TSS region transcription start site region 52085
Tssr52086 5 100414657 to 100414662 5 - TSS region transcription start site region 52086
Cpgi16108 5 100415782 to 100416687 905 CpG island CpG island 16108
Tssr52087 5 100416085 to 100416109 24 - TSS region transcription start site region 52087
Tssr52088 5 100416115 to 100416282 167 - TSS region transcription start site region 52088
Tssr52089 5 100416553 to 100416581 28 - TSS region transcription start site region 52089
5430416N02Rik 5 100420842 to 100429535 8693 - lincRNA gene RIKEN cDNA 5430416N02 gene
Gm27553 5 100421968 to 100422041 73 + unclassified non-coding RNA gene predicted gene, 27553
Gm27997 5 100426736 to 100426804 68 + unclassified non-coding RNA gene predicted gene, 27997
Cpgi16109 5 100428960 to 100430060 1100 CpG island CpG island 16109
Gm28030 5 100429101 to 100429238 137 + unclassified non-coding RNA gene predicted gene, 28030
Gm27286 5 100429329 to 100429507 178 + unclassified non-coding RNA gene predicted gene, 27286
Tssr52090 5 100429452 to 100429465 13 - TSS region transcription start site region 52090
Tssr52091 5 100429491 to 100429502 11 - TSS region transcription start site region 52091
Tssr52092 5 100429503 to 100429523 20 - TSS region transcription start site region 52092
Tssr52093 5 100429531 to 100429547 16 - TSS region transcription start site region 52093
Tssr47479 5 100429706 to 100429748 42 + TSS region transcription start site region 47479
Gm42690 5 100429726 to 100431561 1835 + unclassified gene predicted gene 42690
Lin54 5 100442033 to 100500649 58616 - protein coding gene lin-54 homolog (C. elegans)
Cpgi16110 5 100498301 to 100499021 720 CpG island CpG island 16110
Cpgi16111 5 100499846 to 100500985 1139 CpG island CpG island 16111
Tssr52094 5 100500002 to 100500032 30 - TSS region transcription start site region 52094
Gm23222 5 100500143 to 100500218 75 - miRNA gene predicted gene, 23222
Tssr52095 5 100500586 to 100500597 11 - TSS region transcription start site region 52095
Tssr52096 5 100500600 to 100500616 16 - TSS region transcription start site region 52096
Tssr52097 5 100500621 to 100500657 36 - TSS region transcription start site region 52097
D5Mit402 5 100509248 to 100509371 123 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 402
Gm19620 5 100513187 to 100513620 433 - pseudogene predicted gene, 19620
Gm23173 5 100517284 to 100517443 159 - snRNA gene predicted gene, 23173
Cpgi16112 5 100518073 to 100519063 990 CpG island CpG island 16112
Cops4 5 100518309 to 100547802 29493 + protein coding gene COP9 signalosome subunit 4
Tssr47480 5 100518358 to 100518369 11 + TSS region transcription start site region 47480
Tssr47481 5 100518412 to 100518474 62 + TSS region transcription start site region 47481
Plac8 5 100553725 to 100572245 18520 - protein coding gene placenta-specific 8
Tssr47482 5 100553729 to 100553735 6 + TSS region transcription start site region 47482
Tssr52098 5 100562761 to 100562769 8 - TSS region transcription start site region 52098
Tssr52099 5 100562796 to 100562818 22 - TSS region transcription start site region 52099
Tssr52100 5 100562836 to 100562858 22 - TSS region transcription start site region 52100
Tssr52101 5 100562866 to 100562880 14 - TSS region transcription start site region 52101
Tssr52102 5 100563010 to 100563013 3 - TSS region transcription start site region 52102
Tssr52103 5 100564730 to 100564733 3 - TSS region transcription start site region 52103
Tssr52104 5 100565080 to 100565085 5 - TSS region transcription start site region 52104
Tssr47483 5 100569520 to 100569533 13 + TSS region transcription start site region 47483
Tssr47484 5 100570232 to 100570249 17 + TSS region transcription start site region 47484
Tssr52105 5 100572081 to 100572114 33 - TSS region transcription start site region 52105
Tssr52106 5 100572168 to 100572179 11 - TSS region transcription start site region 52106
Tssr52107 5 100572192 to 100572211 19 - TSS region transcription start site region 52107
Tssr47485 5 100583407 to 100583443 36 + TSS region transcription start site region 47485
Gm43510 5 100592404 to 100592756 352 - pseudogene predicted gene 43510
Tssr52108 5 100593643 to 100593644 1 - TSS region transcription start site region 52108
Tssr52109 5 100595222 to 100595270 48 - TSS region transcription start site region 52109
Tssr52110 5 100599263 to 100599268 5 - TSS region transcription start site region 52110
Tssr52111 5 100604195 to 100604229 34 - TSS region transcription start site region 52111
D5Mit157 5 100629942 to 100630065 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 157
W10q16 5 100630065 to 31975890 -68654175 QTL weight 10 weeks QTL 16
Lgq6 5 100630065 to 31975890 -68654175 QTL late growth QTL 6
Tssr52112 5 100643212 to 100643252 40 - TSS region transcription start site region 52112
Tssr47486 5 100643356 to 100643368 12 + TSS region transcription start site region 47486
Tssr1557 5 100650489 to 100650512 23 + TSS region transcription start site region 1557
Tssr47487 5 100650541 to 100650553 12 + TSS region transcription start site region 47487
Tssr47488 5 100650636 to 100650644 8 + TSS region transcription start site region 47488
Coq2 5 100654723 to 100674289 19566 - protein coding gene coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
Tssr1558 5 100660900 to 100660902 2 + TSS region transcription start site region 1558
D5Mit208 5 100667184 to 100667310 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 208
Gm15777 5 100670859 to 100678105 7246 + antisense lncRNA gene predicted gene 15777
Cpgi16113 5 100673707 to 100674445 738 CpG island CpG island 16113
Tssr52113 5 100674230 to 100674281 51 - TSS region transcription start site region 52113
Hpse 5 100679486 to 100719683 40197 - protein coding gene heparanase
Tssr52114 5 100680069 to 100680105 36 - TSS region transcription start site region 52114
Cpgi16114 5 100719260 to 100719977 717 CpG island CpG island 16114
Tssr52115 5 100719663 to 100719674 11 - TSS region transcription start site region 52115
Tssr52116 5 100719675 to 100719706 31 - TSS region transcription start site region 52116
Gm36619 5 100727099 to 100754285 27186 + lncRNA gene predicted gene, 36619
Cpgi16115 5 100728875 to 100729029 154 CpG island CpG island 16115