Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:99250803-100940867

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg4c 4 99193934 to 99259787 65853 + protein coding gene autophagy related 4C, cysteine peptidase
Tssr37933 4 99253843 to 99253858 15 + TSS region transcription start site region 37933
Gm10305 4 99272671 to 99275145 2474 + unclassified gene predicted gene 10305
Gm12689 4 99295900 to 99297258 1358 + protein coding gene predicted gene 12689
Gm35379 4 99314629 to 99332908 18279 + lncRNA gene predicted gene, 35379
Gm35537 4 99342178 to 99342812 634 - lncRNA gene predicted gene, 35537
Cpgi14478 4 99343941 to 99344216 275 CpG island CpG island 14478
D4Mit58 4 99356158 to 99356345 187 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 58
Spm1 4 99356158 to 99356345 187 QTL splenomegaly modifier
Gm37556 4 99376066 to 99385712 9646 - unclassified gene predicted gene, 37556
Gm12685 4 99418498 to 99418711 213 - pseudogene predicted gene 12685
Gm12686 4 99418773 to 99419169 396 + pseudogene predicted gene 12686
Gm12684 4 99430256 to 99431254 998 - pseudogene predicted gene 12684
Cpgi14479 4 99445340 to 99445793 453 CpG island CpG island 14479
Gm12683 4 99520052 to 99520466 414 - pseudogene predicted gene 12683
Gm37117 4 99525932 to 99530662 4730 + unclassified gene predicted gene, 37117
Gm40211 4 99554786 to 99569348 14562 - lncRNA gene predicted gene, 40211
Gm12690 4 99569500 to 99573011 3511 + lincRNA gene predicted gene 12690
Tssr37934 4 99569518 to 99569534 16 + TSS region transcription start site region 37934
Cpgi14480 4 99572862 to 99573256 394 CpG island CpG island 14480
Gm12687 4 99615817 to 99616522 705 - pseudogene predicted gene 12687
Cpgi14481 4 99650266 to 99651611 1345 CpG island CpG island 14481
Tssr37935 4 99650435 to 99650452 17 + TSS region transcription start site region 37935
Cpgi14482 4 99652998 to 99654200 1202 CpG island CpG island 14482
Gm12688 4 99653607 to 99654983 1376 - lincRNA gene predicted gene 12688
Cpgi14483 4 99654690 to 99655133 443 CpG island CpG island 14483
Tssr42530 4 99655085 to 99655116 31 - TSS region transcription start site region 42530
2810439L12Rik 4 99655717 to 99656012 295 unclassified gene RIKEN cDNA 2810439L12 gene
Cpgi14484 4 99655813 to 99658329 2516 CpG island CpG island 14484
Tssr42531 4 99655987 to 99655988 1 - TSS region transcription start site region 42531
Tssr42532 4 99655998 to 99656032 34 - TSS region transcription start site region 42532
Tssr42533 4 99656035 to 99656040 5 - TSS region transcription start site region 42533
Tssr37936 4 99656129 to 99656154 25 + TSS region transcription start site region 37936
Tssr37937 4 99656164 to 99656176 12 + TSS region transcription start site region 37937
Foxd3 4 99656299 to 99658622 2323 + protein coding gene forkhead box D3
Tssr37938 4 99656328 to 99656340 12 + TSS region transcription start site region 37938
Tssr37939 4 99656355 to 99656382 27 + TSS region transcription start site region 37939
Tssr37940 4 99656662 to 99656672 10 + TSS region transcription start site region 37940
Gm23366 4 99657742 to 99657830 88 + miRNA gene predicted gene, 23366
Cpgi14485 4 99659666 to 99659885 219 CpG island CpG island 14485
Cpgi14486 4 99660340 to 99660653 313 CpG island CpG island 14486
Gm12682 4 99662541 to 99712972 50431 - antisense lncRNA gene predicted gene 12682
Cpgi14487 4 99662805 to 99663498 693 CpG island CpG island 14487
Cpgi14488 4 99715258 to 99716117 859 CpG island CpG island 14488
Tssr37941 4 99715620 to 99715635 15 + TSS region transcription start site region 37941
Tssr37942 4 99715640 to 99715682 42 + TSS region transcription start site region 37942
Alg6 4 99715664 to 99763460 47796 + protein coding gene asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
Itgb3bp 4 99765402 to 99829172 63770 - protein coding gene integrin beta 3 binding protein (beta3-endonexin)
Cpgi14489 4 99829049 to 99829772 723 CpG island CpG island 14489
Tssr42534 4 99829122 to 99829179 57 - TSS region transcription start site region 42534
Tssr42535 4 99829180 to 99829191 11 - TSS region transcription start site region 42535
Tssr42536 4 99829362 to 99829395 33 - TSS region transcription start site region 42536
Tssr37943 4 99829437 to 99829462 25 + TSS region transcription start site region 37943
Efcab7 4 99829500 to 99912785 83285 + protein coding gene EF-hand calcium binding domain 7
Tssr37944 4 99909793 to 99909799 6 + TSS region transcription start site region 37944
Gm26425 4 99909797 to 99909878 81 + snRNA gene predicted gene, 26425
Cpgi14490 4 99929310 to 99930248 938 CpG island CpG island 14490
Tssr42537 4 99929315 to 99929324 9 - TSS region transcription start site region 42537
Tssr37945 4 99929431 to 99929438 7 + TSS region transcription start site region 37945
Tssr37946 4 99929444 to 99929532 88 + TSS region transcription start site region 37946
Pgm1 4 99929451 to 99987294 57843 + protein coding gene phosphoglucomutase 1
Tssr37947 4 99929533 to 99929544 11 + TSS region transcription start site region 37947
BC062258 4 99929818 to 99932327 2509 + lncRNA gene cDNA sequence BC062258
Tssr37948 4 99955489 to 99955509 20 + TSS region transcription start site region 37948
Tssr37949 4 99955697 to 99955702 5 + TSS region transcription start site region 37949
Tssr37950 4 99955715 to 99955736 21 + TSS region transcription start site region 37950
Tssr37951 4 99960376 to 99960388 12 + TSS region transcription start site region 37951
Desp6 4 99964244 to 99964244 0 QTL despair 6
Tssr37952 4 99969680 to 99969689 9 + TSS region transcription start site region 37952
Tssr37953 4 99971754 to 99971771 17 + TSS region transcription start site region 37953
Tssr42538 4 99972929 to 99972933 4 - TSS region transcription start site region 42538
Tssr37954 4 99978508 to 99978533 25 + TSS region transcription start site region 37954
Tssr37955 4 99983912 to 99983922 10 + TSS region transcription start site region 37955
Tssr37956 4 99983985 to 99984011 26 + TSS region transcription start site region 37956
Epid1 4 100000000 to 90000000 -10000000 QTL epididymis and vas deferens weight 1
D4Dcr14 4 100037690 to 100037789 99 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 14
Tssr42539 4 100042096 to 100042107 11 - TSS region transcription start site region 42539
Cpgi14491 4 100042509 to 100042718 209 CpG island CpG island 14491
D4Dcr15 4 100043986 to 100044081 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 15
Gm12702 4 100052520 to 100065984 13464 + lincRNA gene predicted gene 12702
Gm35701 4 100092757 to 100095643 2886 - lncRNA gene predicted gene, 35701
Cpgi14492 4 100095685 to 100096851 1166 CpG island CpG island 14492
Ror1 4 100095791 to 100444765 348974 + protein coding gene receptor tyrosine kinase-like orphan receptor 1
Tssr37957 4 100095803 to 100095867 64 + TSS region transcription start site region 37957
Tssr37958 4 100095877 to 100095889 12 + TSS region transcription start site region 37958
Gm12701 4 100119621 to 100120841 1220 + sense intronic lncRNA gene predicted gene 12701
Tssr37959 4 100145075 to 100145081 6 + TSS region transcription start site region 37959
Tssr37960 4 100160125 to 100160129 4 + TSS region transcription start site region 37960
Tssr37961 4 100227730 to 100227731 1 + TSS region transcription start site region 37961
Tssr37962 4 100305654 to 100305659 5 + TSS region transcription start site region 37962
Tssr37963 4 100336858 to 100336861 3 + TSS region transcription start site region 37963
Gm12706 4 100361362 to 100362059 697 - pseudogene predicted gene 12706
Gm35760 4 100376583 to 100393210 16627 - lncRNA gene predicted gene, 35760
D4Mit175 4 100399497 to 100399607 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 175
Cpgi14493 4 100441519 to 100442023 504 CpG island CpG island 14493
Gm18288 4 100465875 to 100467142 1267 + pseudogene predicted gene, 18288
Tssr37964 4 100478795 to 100478802 7 + TSS region transcription start site region 37964
Tssr37965 4 100478806 to 100478872 66 + TSS region transcription start site region 37965
Ube2u 4 100478867 to 100550145 71278 + protein coding gene ubiquitin-conjugating enzyme E2U (putative)
Tssr37966 4 100479128 to 100479146 18 + TSS region transcription start site region 37966
Tssr37967 4 100479150 to 100479170 20 + TSS region transcription start site region 37967
Tssr37968 4 100479176 to 100479181 5 + TSS region transcription start site region 37968
Ube2uos 4 100523247 to 100527801 4554 - antisense lncRNA gene ubiquitin-conjugating enzyme E2U (putative), opposite strand
Ccdc50-ps 4 100567108 to 100568048 940 - pseudogene Ccdc50 retrotransposed pseudogene
Cpgi14494 4 100567995 to 100568185 190 CpG island CpG island 14494
Tssr42540 4 100568004 to 100568037 33 - TSS region transcription start site region 42540
Gm12700 4 100581278 to 100581734 456 + pseudogene predicted gene 12700
Gm46888 4 100687671 to 100689010 1339 - lncRNA gene predicted gene, 46888
D4Mit119 4 100747673 to 100747809 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 119
Idd11 4 100747673 to 100747809 136 QTL insulin dependent diabetes susceptibility 11
Cpgi14495 4 100776214 to 100777976 1762 CpG island CpG island 14495
Tssr37969 4 100776641 to 100776656 15 + TSS region transcription start site region 37969
Tssr37970 4 100776664 to 100776692 28 + TSS region transcription start site region 37970
Cachd1 4 100776679 to 101003749 227070 + protein coding gene cache domain containing 1
Tssr37971 4 100776704 to 100776721 17 + TSS region transcription start site region 37971
Tssr1239 4 100776764 to 100776779 15 + TSS region transcription start site region 1239
Tssr37972 4 100776794 to 100776806 12 + TSS region transcription start site region 37972
Tssr37973 4 100819286 to 100819307 21 + TSS region transcription start site region 37973
Tssr37974 4 100819434 to 100819459 25 + TSS region transcription start site region 37974
Tssr1240 4 100861411 to 100861418 7 + TSS region transcription start site region 1240
Tssr37975 4 100911491 to 100911501 10 + TSS region transcription start site region 37975