Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:99136066-99625712

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12681 4 99146914 to 99161642 14728 - lincRNA gene predicted gene 12681
Cmmm1 4 99152846 to 99152846 0 QTL carcinoma modifier of MSM 1
Tssr37925 4 99158768 to 99158781 13 + TSS region transcription start site region 37925
Cpgi14476 4 99193833 to 99194614 781 CpG island CpG island 14476
Tssr37926 4 99193896 to 99193935 39 + TSS region transcription start site region 37926
Atg4c 4 99193934 to 99259787 65853 + protein coding gene autophagy related 4C, cysteine peptidase
Tssr37927 4 99194124 to 99194204 80 + TSS region transcription start site region 37927
Tssr37928 4 99194252 to 99194266 14 + TSS region transcription start site region 37928
Tssr37929 4 99194271 to 99194282 11 + TSS region transcription start site region 37929
Tssr42529 4 99194623 to 99194629 6 - TSS region transcription start site region 42529
Tssr37930 4 99194749 to 99194782 33 + TSS region transcription start site region 37930
Cpgi14477 4 99209724 to 99209963 239 CpG island CpG island 14477
Tssr37931 4 99224491 to 99224494 3 + TSS region transcription start site region 37931
Tssr37932 4 99240524 to 99240547 23 + TSS region transcription start site region 37932
Tssr37933 4 99253843 to 99253858 15 + TSS region transcription start site region 37933
Gm10305 4 99272671 to 99275145 2474 + unclassified gene predicted gene 10305
Gm12689 4 99295900 to 99297258 1358 + protein coding gene predicted gene 12689
Gm35379 4 99314629 to 99332908 18279 + lncRNA gene predicted gene, 35379
Gm35537 4 99342178 to 99342812 634 - lncRNA gene predicted gene, 35537
Cpgi14478 4 99343941 to 99344216 275 CpG island CpG island 14478
Spm1 4 99356158 to 99356345 187 QTL splenomegaly modifier
D4Mit58 4 99356158 to 99356345 187 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 58
Gm37556 4 99376066 to 99385712 9646 - unclassified gene predicted gene, 37556
Gm12685 4 99418498 to 99418711 213 - pseudogene predicted gene 12685
Gm12686 4 99418773 to 99419169 396 + pseudogene predicted gene 12686
Gm12684 4 99430256 to 99431254 998 - pseudogene predicted gene 12684
Cpgi14479 4 99445340 to 99445793 453 CpG island CpG island 14479
Gm12683 4 99520052 to 99520466 414 - pseudogene predicted gene 12683
Gm37117 4 99525932 to 99530662 4730 + unclassified gene predicted gene, 37117
Gm40211 4 99554786 to 99569348 14562 - lncRNA gene predicted gene, 40211
Gm12690 4 99569500 to 99573011 3511 + lincRNA gene predicted gene 12690
Tssr37934 4 99569518 to 99569534 16 + TSS region transcription start site region 37934
Cpgi14480 4 99572862 to 99573256 394 CpG island CpG island 14480
Gm12687 4 99615817 to 99616522 705 - pseudogene predicted gene 12687