Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:98729533-101129544

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
L1td1 4 98726754 to 98738486 11732 + protein coding gene LINE-1 type transposase domain containing 1
Tssr42516 4 98733522 to 98733533 11 - TSS region transcription start site region 42516
Cpgi14472 4 98733764 to 98734071 307 CpG island CpG island 14472
Tssr37900 4 98733949 to 98733952 3 + TSS region transcription start site region 37900
Gm17376 4 98745735 to 98745822 87 + pseudogene predicted gene, 17376
Kank4 4 98754898 to 98817537 62639 - protein coding gene KN motif and ankyrin repeat domains 4
Kank4os 4 98793768 to 98798900 5132 + antisense lncRNA gene KN motif and ankyrin repeat domains 4, opposite strand
Cpgi14473 4 98816864 to 98818112 1248 CpG island CpG island 14473
Tssr42517 4 98817687 to 98817706 19 - TSS region transcription start site region 42517
I0C0044D17Rik 4 98818475 to 98823840 5365 - protein coding gene RIKEN cDNA I0C0044D17 gene
Gm12851 4 98855614 to 98856034 420 + pseudogene predicted gene 12851
Cpgi14474 4 98922742 to 98924872 2130 CpG island CpG island 14474
Tssr37901 4 98922928 to 98922937 9 + TSS region transcription start site region 37901
Tssr37902 4 98923659 to 98923676 17 + TSS region transcription start site region 37902
Tssr37903 4 98923724 to 98923743 19 + TSS region transcription start site region 37903
Tssr37904 4 98923751 to 98923777 26 + TSS region transcription start site region 37904
Usp1 4 98923810 to 98935543 11733 + protein coding gene ubiquitin specific peptidase 1
Tssr37905 4 98923815 to 98923842 27 + TSS region transcription start site region 37905
Tssr37906 4 98923845 to 98923893 48 + TSS region transcription start site region 37906
Tssr37907 4 98923908 to 98923976 68 + TSS region transcription start site region 37907
Dock7 4 98936671 to 99120915 184244 - protein coding gene dedicator of cytokinesis 7
Tssr37908 4 98978709 to 98978734 25 + TSS region transcription start site region 37908
Tssr42518 4 98999975 to 98999981 6 - TSS region transcription start site region 42518
Tssr42519 4 99030815 to 99030826 11 - TSS region transcription start site region 42519
Tssr37909 4 99030878 to 99030883 5 + TSS region transcription start site region 37909
Tssr37910 4 99030907 to 99030944 37 + TSS region transcription start site region 37910
Tssr37911 4 99030946 to 99030961 15 + TSS region transcription start site region 37911
Angptl3 4 99030954 to 99038192 7238 + protein coding gene angiopoietin-like 3
Tssr37912 4 99031161 to 99031172 11 + TSS region transcription start site region 37912
Tssr37913 4 99031196 to 99031208 12 + TSS region transcription start site region 37913
Tssr37914 4 99031286 to 99031303 17 + TSS region transcription start site region 37914
Tssr37915 4 99031336 to 99031347 11 + TSS region transcription start site region 37915
Tssr37916 4 99031417 to 99031437 20 + TSS region transcription start site region 37916
Tssr37917 4 99031462 to 99031474 12 + TSS region transcription start site region 37917
Tssr37918 4 99033231 to 99033243 12 + TSS region transcription start site region 37918
Tssr37919 4 99037380 to 99037394 14 + TSS region transcription start site region 37919
Tssr37920 4 99037462 to 99037478 16 + TSS region transcription start site region 37920
Tssr37921 4 99037491 to 99037503 12 + TSS region transcription start site region 37921
Tssr37922 4 99037535 to 99037544 9 + TSS region transcription start site region 37922
Tssr37923 4 99037548 to 99037559 11 + TSS region transcription start site region 37923
Tssr37924 4 99037893 to 99037897 4 + TSS region transcription start site region 37924
Gm12852 4 99103060 to 99103778 718 - pseudogene predicted gene 12852
Tssr42520 4 99103796 to 99103833 37 - TSS region transcription start site region 42520
Gm12705 4 99116414 to 99118301 1887 + antisense lncRNA gene predicted gene 12705
Cpgi14475 4 99120181 to 99121327 1146 CpG island CpG island 14475
Tssr42521 4 99120836 to 99120853 17 - TSS region transcription start site region 42521
Tssr42522 4 99120856 to 99120894 38 - TSS region transcription start site region 42522
Tssr42523 4 99120898 to 99120935 37 - TSS region transcription start site region 42523
Tssr42524 4 99120946 to 99120962 16 - TSS region transcription start site region 42524
Tssr42525 4 99121246 to 99121255 9 - TSS region transcription start site region 42525
Tssr42526 4 99121267 to 99121278 11 - TSS region transcription start site region 42526
Tssr42527 4 99122468 to 99122480 12 - TSS region transcription start site region 42527
Tssr42528 4 99122485 to 99122497 12 - TSS region transcription start site region 42528
Gm12681 4 99146914 to 99161642 14728 - lincRNA gene predicted gene 12681
Cmmm1 4 99152846 to 99152846 0 QTL carcinoma modifier of MSM 1
Tssr37925 4 99158768 to 99158781 13 + TSS region transcription start site region 37925
Cpgi14476 4 99193833 to 99194614 781 CpG island CpG island 14476
Tssr37926 4 99193896 to 99193935 39 + TSS region transcription start site region 37926
Atg4c 4 99193934 to 99259787 65853 + protein coding gene autophagy related 4C, cysteine peptidase
Tssr37927 4 99194124 to 99194204 80 + TSS region transcription start site region 37927
Tssr37928 4 99194252 to 99194266 14 + TSS region transcription start site region 37928
Tssr37929 4 99194271 to 99194282 11 + TSS region transcription start site region 37929
Tssr42529 4 99194623 to 99194629 6 - TSS region transcription start site region 42529
Tssr37930 4 99194749 to 99194782 33 + TSS region transcription start site region 37930
Cpgi14477 4 99209724 to 99209963 239 CpG island CpG island 14477
Tssr37931 4 99224491 to 99224494 3 + TSS region transcription start site region 37931
Tssr37932 4 99240524 to 99240547 23 + TSS region transcription start site region 37932
Tssr37933 4 99253843 to 99253858 15 + TSS region transcription start site region 37933
Gm10305 4 99272671 to 99275145 2474 + unclassified gene predicted gene 10305
Gm12689 4 99295900 to 99297258 1358 + protein coding gene predicted gene 12689
Gm35379 4 99314629 to 99332908 18279 + lncRNA gene predicted gene, 35379
Gm35537 4 99342178 to 99342812 634 - lncRNA gene predicted gene, 35537
Cpgi14478 4 99343941 to 99344216 275 CpG island CpG island 14478
Spm1 4 99356158 to 99356345 187 QTL splenomegaly modifier
D4Mit58 4 99356158 to 99356345 187 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 58
Gm37556 4 99376066 to 99385712 9646 - unclassified gene predicted gene, 37556
Gm12685 4 99418498 to 99418711 213 - pseudogene predicted gene 12685
Gm12686 4 99418773 to 99419169 396 + pseudogene predicted gene 12686
Gm12684 4 99430256 to 99431254 998 - pseudogene predicted gene 12684
Cpgi14479 4 99445340 to 99445793 453 CpG island CpG island 14479
Gm12683 4 99520052 to 99520466 414 - pseudogene predicted gene 12683
Gm37117 4 99525932 to 99530662 4730 + unclassified gene predicted gene, 37117
Gm40211 4 99554786 to 99569348 14562 - lncRNA gene predicted gene, 40211
Gm12690 4 99569500 to 99573011 3511 + lincRNA gene predicted gene 12690
Tssr37934 4 99569518 to 99569534 16 + TSS region transcription start site region 37934
Cpgi14480 4 99572862 to 99573256 394 CpG island CpG island 14480
Gm12687 4 99615817 to 99616522 705 - pseudogene predicted gene 12687
Cpgi14481 4 99650266 to 99651611 1345 CpG island CpG island 14481
Tssr37935 4 99650435 to 99650452 17 + TSS region transcription start site region 37935
Cpgi14482 4 99652998 to 99654200 1202 CpG island CpG island 14482
Gm12688 4 99653607 to 99654983 1376 - lincRNA gene predicted gene 12688
Cpgi14483 4 99654690 to 99655133 443 CpG island CpG island 14483
Tssr42530 4 99655085 to 99655116 31 - TSS region transcription start site region 42530
2810439L12Rik 4 99655717 to 99656012 295 unclassified gene RIKEN cDNA 2810439L12 gene
Cpgi14484 4 99655813 to 99658329 2516 CpG island CpG island 14484
Tssr42531 4 99655987 to 99655988 1 - TSS region transcription start site region 42531
Tssr42532 4 99655998 to 99656032 34 - TSS region transcription start site region 42532
Tssr42533 4 99656035 to 99656040 5 - TSS region transcription start site region 42533
Tssr37936 4 99656129 to 99656154 25 + TSS region transcription start site region 37936
Tssr37937 4 99656164 to 99656176 12 + TSS region transcription start site region 37937
Foxd3 4 99656299 to 99658622 2323 + protein coding gene forkhead box D3
Tssr37938 4 99656328 to 99656340 12 + TSS region transcription start site region 37938
Tssr37939 4 99656355 to 99656382 27 + TSS region transcription start site region 37939
Tssr37940 4 99656662 to 99656672 10 + TSS region transcription start site region 37940
Gm23366 4 99657742 to 99657830 88 + miRNA gene predicted gene, 23366
Cpgi14485 4 99659666 to 99659885 219 CpG island CpG island 14485
Cpgi14486 4 99660340 to 99660653 313 CpG island CpG island 14486
Gm12682 4 99662541 to 99712972 50431 - antisense lncRNA gene predicted gene 12682
Cpgi14487 4 99662805 to 99663498 693 CpG island CpG island 14487
Cpgi14488 4 99715258 to 99716117 859 CpG island CpG island 14488
Tssr37941 4 99715620 to 99715635 15 + TSS region transcription start site region 37941
Tssr37942 4 99715640 to 99715682 42 + TSS region transcription start site region 37942
Alg6 4 99715664 to 99763460 47796 + protein coding gene asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
Itgb3bp 4 99765402 to 99829172 63770 - protein coding gene integrin beta 3 binding protein (beta3-endonexin)
Cpgi14489 4 99829049 to 99829772 723 CpG island CpG island 14489
Tssr42534 4 99829122 to 99829179 57 - TSS region transcription start site region 42534
Tssr42535 4 99829180 to 99829191 11 - TSS region transcription start site region 42535
Tssr42536 4 99829362 to 99829395 33 - TSS region transcription start site region 42536
Tssr37943 4 99829437 to 99829462 25 + TSS region transcription start site region 37943
Efcab7 4 99829500 to 99912785 83285 + protein coding gene EF-hand calcium binding domain 7
Tssr37944 4 99909793 to 99909799 6 + TSS region transcription start site region 37944
Gm26425 4 99909797 to 99909878 81 + snRNA gene predicted gene, 26425
Cpgi14490 4 99929310 to 99930248 938 CpG island CpG island 14490
Tssr42537 4 99929315 to 99929324 9 - TSS region transcription start site region 42537
Tssr37945 4 99929431 to 99929438 7 + TSS region transcription start site region 37945
Tssr37946 4 99929444 to 99929532 88 + TSS region transcription start site region 37946
Pgm1 4 99929451 to 99987294 57843 + protein coding gene phosphoglucomutase 1
Tssr37947 4 99929533 to 99929544 11 + TSS region transcription start site region 37947
BC062258 4 99929818 to 99932327 2509 + lncRNA gene cDNA sequence BC062258
Tssr37948 4 99955489 to 99955509 20 + TSS region transcription start site region 37948
Tssr37949 4 99955697 to 99955702 5 + TSS region transcription start site region 37949
Tssr37950 4 99955715 to 99955736 21 + TSS region transcription start site region 37950
Tssr37951 4 99960376 to 99960388 12 + TSS region transcription start site region 37951
Desp6 4 99964244 to 99964244 0 QTL despair 6
Tssr37952 4 99969680 to 99969689 9 + TSS region transcription start site region 37952
Tssr37953 4 99971754 to 99971771 17 + TSS region transcription start site region 37953
Tssr42538 4 99972929 to 99972933 4 - TSS region transcription start site region 42538
Tssr37954 4 99978508 to 99978533 25 + TSS region transcription start site region 37954
Tssr37955 4 99983912 to 99983922 10 + TSS region transcription start site region 37955
Tssr37956 4 99983985 to 99984011 26 + TSS region transcription start site region 37956
Epid1 4 100000000 to 90000000 -10000000 QTL epididymis and vas deferens weight 1
D4Dcr14 4 100037690 to 100037789 99 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 14
Tssr42539 4 100042096 to 100042107 11 - TSS region transcription start site region 42539
Cpgi14491 4 100042509 to 100042718 209 CpG island CpG island 14491
D4Dcr15 4 100043986 to 100044081 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 15
Gm12702 4 100052520 to 100065984 13464 + lincRNA gene predicted gene 12702
Gm35701 4 100092757 to 100095643 2886 - lncRNA gene predicted gene, 35701
Cpgi14492 4 100095685 to 100096851 1166 CpG island CpG island 14492
Ror1 4 100095791 to 100444765 348974 + protein coding gene receptor tyrosine kinase-like orphan receptor 1
Tssr37957 4 100095803 to 100095867 64 + TSS region transcription start site region 37957
Tssr37958 4 100095877 to 100095889 12 + TSS region transcription start site region 37958
Gm12701 4 100119621 to 100120841 1220 + sense intronic lncRNA gene predicted gene 12701
Tssr37959 4 100145075 to 100145081 6 + TSS region transcription start site region 37959
Tssr37960 4 100160125 to 100160129 4 + TSS region transcription start site region 37960
Tssr37961 4 100227730 to 100227731 1 + TSS region transcription start site region 37961
Tssr37962 4 100305654 to 100305659 5 + TSS region transcription start site region 37962
Tssr37963 4 100336858 to 100336861 3 + TSS region transcription start site region 37963
Gm12706 4 100361362 to 100362059 697 - pseudogene predicted gene 12706
Gm35760 4 100376583 to 100393210 16627 - lncRNA gene predicted gene, 35760
D4Mit175 4 100399497 to 100399607 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 175
Cpgi14493 4 100441519 to 100442023 504 CpG island CpG island 14493
Gm18288 4 100465875 to 100467142 1267 + pseudogene predicted gene, 18288
Tssr37964 4 100478795 to 100478802 7 + TSS region transcription start site region 37964
Tssr37965 4 100478806 to 100478872 66 + TSS region transcription start site region 37965
Ube2u 4 100478867 to 100550145 71278 + protein coding gene ubiquitin-conjugating enzyme E2U (putative)
Tssr37966 4 100479128 to 100479146 18 + TSS region transcription start site region 37966
Tssr37967 4 100479150 to 100479170 20 + TSS region transcription start site region 37967
Tssr37968 4 100479176 to 100479181 5 + TSS region transcription start site region 37968
Ube2uos 4 100523247 to 100527801 4554 - antisense lncRNA gene ubiquitin-conjugating enzyme E2U (putative), opposite strand
Ccdc50-ps 4 100567108 to 100568048 940 - pseudogene Ccdc50 retrotransposed pseudogene
Cpgi14494 4 100567995 to 100568185 190 CpG island CpG island 14494
Tssr42540 4 100568004 to 100568037 33 - TSS region transcription start site region 42540
Gm12700 4 100581278 to 100581734 456 + pseudogene predicted gene 12700
Gm46888 4 100687671 to 100689010 1339 - lncRNA gene predicted gene, 46888
Idd11 4 100747673 to 100747809 136 QTL insulin dependent diabetes susceptibility 11
D4Mit119 4 100747673 to 100747809 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 119
Cpgi14495 4 100776214 to 100777976 1762 CpG island CpG island 14495
Tssr37969 4 100776641 to 100776656 15 + TSS region transcription start site region 37969
Tssr37970 4 100776664 to 100776692 28 + TSS region transcription start site region 37970
Cachd1 4 100776679 to 101003749 227070 + protein coding gene cache domain containing 1
Tssr37971 4 100776704 to 100776721 17 + TSS region transcription start site region 37971
Tssr1239 4 100776764 to 100776779 15 + TSS region transcription start site region 1239
Tssr37972 4 100776794 to 100776806 12 + TSS region transcription start site region 37972
Tssr37973 4 100819286 to 100819307 21 + TSS region transcription start site region 37973
Tssr37974 4 100819434 to 100819459 25 + TSS region transcription start site region 37974
Tssr1240 4 100861411 to 100861418 7 + TSS region transcription start site region 1240
Tssr37975 4 100911491 to 100911501 10 + TSS region transcription start site region 37975
Tssr37976 4 100994606 to 100994633 27 + TSS region transcription start site region 37976
D4Mit304 4 101001053 to 101001169 116 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 304
Tssr37977 4 101002976 to 101003006 30 + TSS region transcription start site region 37977
Gm10577 4 101020298 to 101020696 398 - protein coding gene predicted gene 10577
Gm10576 4 101054439 to 101055263 824 - protein coding gene predicted gene 10576
Cpgi14496 4 101068687 to 101069847 1160 CpG island CpG island 14496
Tssr37978 4 101068974 to 101068988 14 + TSS region transcription start site region 37978
Tssr37979 4 101068993 to 101069029 36 + TSS region transcription start site region 37979
Tssr37980 4 101069035 to 101069074 39 + TSS region transcription start site region 37980
Raver2 4 101069038 to 101152370 83332 + protein coding gene ribonucleoprotein, PTB-binding 2
Tssr37981 4 101069083 to 101069094 11 + TSS region transcription start site region 37981
Gm35956 4 101074025 to 101076703 2678 + lncRNA gene predicted gene, 35956
Gm22100 4 101103588 to 101103650 62 - snRNA gene predicted gene, 22100