Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:98590614-99121034

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Patj 4 98395785 to 98719603 323818 + protein coding gene PATJ, crumbs cell polarity complex component
D4Mit28 4 98657302 to 98657442 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 28
Gm26154 4 98661637 to 98661732 95 + miRNA gene predicted gene, 26154
Gm12846 4 98664366 to 98666135 1769 + pseudogene predicted gene 12846
Gm35137 4 98696893 to 98699781 2888 - lncRNA gene predicted gene, 35137
Tssr42510 4 98699101 to 98699111 10 - TSS region transcription start site region 42510
Tssr42511 4 98699116 to 98699129 13 - TSS region transcription start site region 42511
Tssr42512 4 98699137 to 98699148 11 - TSS region transcription start site region 42512
Gm35073 4 98700445 to 98700755 310 - lncRNA gene predicted gene, 35073
Tssr42513 4 98702448 to 98702471 23 - TSS region transcription start site region 42513
D4Mit246 4 98707711 to 98707806 95 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 246
Cpgi14471 4 98726536 to 98727597 1061 CpG island CpG island 14471
Tssr42514 4 98726611 to 98726661 50 - TSS region transcription start site region 42514
Tssr37896 4 98726744 to 98726766 22 + TSS region transcription start site region 37896
L1td1 4 98726754 to 98738486 11732 + protein coding gene LINE-1 type transposase domain containing 1
Tssr37897 4 98726773 to 98726783 10 + TSS region transcription start site region 37897
Tssr37898 4 98726786 to 98726805 19 + TSS region transcription start site region 37898
Tssr42515 4 98727965 to 98727978 13 - TSS region transcription start site region 42515
Tssr37899 4 98728358 to 98728373 15 + TSS region transcription start site region 37899
Tssr42516 4 98733522 to 98733533 11 - TSS region transcription start site region 42516
Cpgi14472 4 98733764 to 98734071 307 CpG island CpG island 14472
Tssr37900 4 98733949 to 98733952 3 + TSS region transcription start site region 37900
Gm17376 4 98745735 to 98745822 87 + pseudogene predicted gene, 17376
Kank4 4 98754898 to 98817537 62639 - protein coding gene KN motif and ankyrin repeat domains 4
Kank4os 4 98793768 to 98798900 5132 + antisense lncRNA gene KN motif and ankyrin repeat domains 4, opposite strand
Cpgi14473 4 98816864 to 98818112 1248 CpG island CpG island 14473
Tssr42517 4 98817687 to 98817706 19 - TSS region transcription start site region 42517
I0C0044D17Rik 4 98818475 to 98823840 5365 - protein coding gene RIKEN cDNA I0C0044D17 gene
Gm12851 4 98855614 to 98856034 420 + pseudogene predicted gene 12851
Cpgi14474 4 98922742 to 98924872 2130 CpG island CpG island 14474
Tssr37901 4 98922928 to 98922937 9 + TSS region transcription start site region 37901
Tssr37902 4 98923659 to 98923676 17 + TSS region transcription start site region 37902
Tssr37903 4 98923724 to 98923743 19 + TSS region transcription start site region 37903
Tssr37904 4 98923751 to 98923777 26 + TSS region transcription start site region 37904
Usp1 4 98923810 to 98935543 11733 + protein coding gene ubiquitin specific peptidase 1
Tssr37905 4 98923815 to 98923842 27 + TSS region transcription start site region 37905
Tssr37906 4 98923845 to 98923893 48 + TSS region transcription start site region 37906
Tssr37907 4 98923908 to 98923976 68 + TSS region transcription start site region 37907
Dock7 4 98936671 to 99120915 184244 - protein coding gene dedicator of cytokinesis 7
Tssr37908 4 98978709 to 98978734 25 + TSS region transcription start site region 37908
Tssr42518 4 98999975 to 98999981 6 - TSS region transcription start site region 42518
Tssr42519 4 99030815 to 99030826 11 - TSS region transcription start site region 42519
Tssr37909 4 99030878 to 99030883 5 + TSS region transcription start site region 37909
Tssr37910 4 99030907 to 99030944 37 + TSS region transcription start site region 37910
Tssr37911 4 99030946 to 99030961 15 + TSS region transcription start site region 37911
Angptl3 4 99030954 to 99038192 7238 + protein coding gene angiopoietin-like 3
Tssr37912 4 99031161 to 99031172 11 + TSS region transcription start site region 37912
Tssr37913 4 99031196 to 99031208 12 + TSS region transcription start site region 37913
Tssr37914 4 99031286 to 99031303 17 + TSS region transcription start site region 37914
Tssr37915 4 99031336 to 99031347 11 + TSS region transcription start site region 37915
Tssr37916 4 99031417 to 99031437 20 + TSS region transcription start site region 37916
Tssr37917 4 99031462 to 99031474 12 + TSS region transcription start site region 37917
Tssr37918 4 99033231 to 99033243 12 + TSS region transcription start site region 37918
Tssr37919 4 99037380 to 99037394 14 + TSS region transcription start site region 37919
Tssr37920 4 99037462 to 99037478 16 + TSS region transcription start site region 37920
Tssr37921 4 99037491 to 99037503 12 + TSS region transcription start site region 37921
Tssr37922 4 99037535 to 99037544 9 + TSS region transcription start site region 37922
Tssr37923 4 99037548 to 99037559 11 + TSS region transcription start site region 37923
Tssr37924 4 99037893 to 99037897 4 + TSS region transcription start site region 37924
Gm12852 4 99103060 to 99103778 718 - pseudogene predicted gene 12852
Tssr42520 4 99103796 to 99103833 37 - TSS region transcription start site region 42520
Gm12705 4 99116414 to 99118301 1887 + antisense lncRNA gene predicted gene 12705
Cpgi14475 4 99120181 to 99121327 1146 CpG island CpG island 14475
Tssr42521 4 99120836 to 99120853 17 - TSS region transcription start site region 42521
Tssr42522 4 99120856 to 99120894 38 - TSS region transcription start site region 42522
Tssr42523 4 99120898 to 99120935 37 - TSS region transcription start site region 42523
Tssr42524 4 99120946 to 99120962 16 - TSS region transcription start site region 42524
Lbw2 4 128115487 to 98657302 -29458185 QTL lupus NZB x NZW 2