Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:97886035-101426040

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330 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nfia 4 97772734 to 98118874 346140 + protein coding gene nuclear factor I/A
D4Ertd681e 4 97891146 to 97891389 243 DNA segment DNA segment, Chr 4, ERATO Doi 681, expressed
Tssr37866 4 97906153 to 97906192 39 + TSS region transcription start site region 37866
Cpgi14466 4 97910761 to 97911118 357 CpG island CpG island 14466
Gm40208 4 97930425 to 97940987 10562 + lncRNA gene predicted gene, 40208
Tssr37867 4 97930433 to 97930437 4 + TSS region transcription start site region 37867
Gm34218 4 98018556 to 98024773 6217 - lncRNA gene predicted gene, 34218
Tssr42507 4 98023062 to 98023101 39 - TSS region transcription start site region 42507
Tssr37868 4 98041581 to 98041610 29 + TSS region transcription start site region 37868
Tssr37869 4 98063072 to 98063084 12 + TSS region transcription start site region 37869
D4Ertd513e 4 98072545 to 98072774 229 DNA segment DNA segment, Chr 4, ERATO Doi 513, expressed
Cpgi14467 4 98102669 to 98102950 281 CpG island CpG island 14467
Tssr37870 4 98111475 to 98111480 5 + TSS region transcription start site region 37870
Tssr37871 4 98112024 to 98112030 6 + TSS region transcription start site region 37871
Tssr37872 4 98113349 to 98113369 20 + TSS region transcription start site region 37872
Tssr37873 4 98113707 to 98113724 17 + TSS region transcription start site region 37873
Tssr37874 4 98114831 to 98114835 4 + TSS region transcription start site region 37874
Gm34784 4 98125654 to 98131273 5619 + lncRNA gene predicted gene, 34784
Gm12691 4 98146065 to 98150261 4196 - pseudogene predicted gene 12691
D4Mit303 4 98210228 to 98210348 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 303
Gm12692 4 98234745 to 98235289 544 - pseudogene predicted gene 12692
Tssr42508 4 98235367 to 98235387 20 - TSS region transcription start site region 42508
Gm12787 4 98268083 to 98268575 492 - pseudogene predicted gene 12787
Gm24203 4 98275725 to 98275838 113 + unclassified non-coding RNA gene predicted gene, 24203
0610025J13Rik 4 98321398 to 98331791 10393 + antisense lncRNA gene RIKEN cDNA 0610025J13 gene
Cpgi14468 4 98322208 to 98322899 691 CpG island CpG island 14468
Edlmmq3 4 98325754 to 98325754 0 QTL extensor digitorum longus muscle mass QTL 3
Gm12788 4 98352427 to 98352734 307 + pseudogene predicted gene 12788
Tm2d1 4 98355370 to 98383279 27909 - protein coding gene TM2 domain containing 1
Cpgi14469 4 98382773 to 98383392 619 CpG island CpG island 14469
Tssr42509 4 98383232 to 98383280 48 - TSS region transcription start site region 42509
Gm24960 4 98383402 to 98383491 89 - snRNA gene predicted gene, 24960
Cpgi14470 4 98395527 to 98396436 909 CpG island CpG island 14470
Tssr37875 4 98395768 to 98395796 28 + TSS region transcription start site region 37875
Patj 4 98395785 to 98719603 323818 + protein coding gene PATJ, crumbs cell polarity complex component
Tssr37876 4 98395817 to 98395888 71 + TSS region transcription start site region 37876
Tssr37877 4 98395891 to 98395908 17 + TSS region transcription start site region 37877
Tssr37878 4 98396378 to 98396408 30 + TSS region transcription start site region 37878
Tssr37879 4 98436804 to 98436820 16 + TSS region transcription start site region 37879
Tssr37880 4 98436859 to 98436877 18 + TSS region transcription start site region 37880
Tssr37881 4 98436907 to 98436961 54 + TSS region transcription start site region 37881
Tssr37882 4 98436964 to 98436971 7 + TSS region transcription start site region 37882
Tssr37883 4 98437168 to 98437218 50 + TSS region transcription start site region 37883
Tssr37884 4 98437310 to 98437317 7 + TSS region transcription start site region 37884
Tssr37885 4 98437322 to 98437346 24 + TSS region transcription start site region 37885
Tssr37886 4 98541617 to 98541619 2 + TSS region transcription start site region 37886
Tssr1238 4 98546614 to 98546624 10 + TSS region transcription start site region 1238
Tssr37887 4 98546631 to 98546655 24 + TSS region transcription start site region 37887
Tssr37888 4 98546662 to 98546689 27 + TSS region transcription start site region 37888
Tssr37889 4 98546696 to 98546709 13 + TSS region transcription start site region 37889
Tssr37890 4 98546710 to 98546739 29 + TSS region transcription start site region 37890
Tssr37891 4 98546746 to 98546763 17 + TSS region transcription start site region 37891
Tssr37892 4 98546797 to 98546805 8 + TSS region transcription start site region 37892
Tssr37893 4 98546897 to 98546909 12 + TSS region transcription start site region 37893
Tssr37894 4 98546919 to 98546959 40 + TSS region transcription start site region 37894
Tssr37895 4 98549678 to 98549717 39 + TSS region transcription start site region 37895
Gm22625 4 98557740 to 98557865 125 - miRNA gene predicted gene, 22625
Gm40210 4 98579527 to 98588009 8482 + lncRNA gene predicted gene, 40210
D4Mit28 4 98657302 to 98657442 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 28
Gm26154 4 98661637 to 98661732 95 + miRNA gene predicted gene, 26154
Gm12846 4 98664366 to 98666135 1769 + pseudogene predicted gene 12846
Gm35137 4 98696893 to 98699781 2888 - lncRNA gene predicted gene, 35137
Tssr42510 4 98699101 to 98699111 10 - TSS region transcription start site region 42510
Tssr42511 4 98699116 to 98699129 13 - TSS region transcription start site region 42511
Tssr42512 4 98699137 to 98699148 11 - TSS region transcription start site region 42512
Gm35073 4 98700445 to 98700755 310 - lncRNA gene predicted gene, 35073
Tssr42513 4 98702448 to 98702471 23 - TSS region transcription start site region 42513
D4Mit246 4 98707711 to 98707806 95 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 246
Cpgi14471 4 98726536 to 98727597 1061 CpG island CpG island 14471
Tssr42514 4 98726611 to 98726661 50 - TSS region transcription start site region 42514
Tssr37896 4 98726744 to 98726766 22 + TSS region transcription start site region 37896
L1td1 4 98726754 to 98738486 11732 + protein coding gene LINE-1 type transposase domain containing 1
Tssr37897 4 98726773 to 98726783 10 + TSS region transcription start site region 37897
Tssr37898 4 98726786 to 98726805 19 + TSS region transcription start site region 37898
Tssr42515 4 98727965 to 98727978 13 - TSS region transcription start site region 42515
Tssr37899 4 98728358 to 98728373 15 + TSS region transcription start site region 37899
Tssr42516 4 98733522 to 98733533 11 - TSS region transcription start site region 42516
Cpgi14472 4 98733764 to 98734071 307 CpG island CpG island 14472
Tssr37900 4 98733949 to 98733952 3 + TSS region transcription start site region 37900
Gm17376 4 98745735 to 98745822 87 + pseudogene predicted gene, 17376
Kank4 4 98754898 to 98817537 62639 - protein coding gene KN motif and ankyrin repeat domains 4
Kank4os 4 98793768 to 98798900 5132 + antisense lncRNA gene KN motif and ankyrin repeat domains 4, opposite strand
Cpgi14473 4 98816864 to 98818112 1248 CpG island CpG island 14473
Tssr42517 4 98817687 to 98817706 19 - TSS region transcription start site region 42517
I0C0044D17Rik 4 98818475 to 98823840 5365 - protein coding gene RIKEN cDNA I0C0044D17 gene
Gm12851 4 98855614 to 98856034 420 + pseudogene predicted gene 12851
Cpgi14474 4 98922742 to 98924872 2130 CpG island CpG island 14474
Tssr37901 4 98922928 to 98922937 9 + TSS region transcription start site region 37901
Tssr37902 4 98923659 to 98923676 17 + TSS region transcription start site region 37902
Tssr37903 4 98923724 to 98923743 19 + TSS region transcription start site region 37903
Tssr37904 4 98923751 to 98923777 26 + TSS region transcription start site region 37904
Usp1 4 98923810 to 98935543 11733 + protein coding gene ubiquitin specific peptidase 1
Tssr37905 4 98923815 to 98923842 27 + TSS region transcription start site region 37905
Tssr37906 4 98923845 to 98923893 48 + TSS region transcription start site region 37906
Tssr37907 4 98923908 to 98923976 68 + TSS region transcription start site region 37907
Dock7 4 98936671 to 99120915 184244 - protein coding gene dedicator of cytokinesis 7
Tssr37908 4 98978709 to 98978734 25 + TSS region transcription start site region 37908
Tssr42518 4 98999975 to 98999981 6 - TSS region transcription start site region 42518
Tssr42519 4 99030815 to 99030826 11 - TSS region transcription start site region 42519
Tssr37909 4 99030878 to 99030883 5 + TSS region transcription start site region 37909
Tssr37910 4 99030907 to 99030944 37 + TSS region transcription start site region 37910
Tssr37911 4 99030946 to 99030961 15 + TSS region transcription start site region 37911
Angptl3 4 99030954 to 99038192 7238 + protein coding gene angiopoietin-like 3
Tssr37912 4 99031161 to 99031172 11 + TSS region transcription start site region 37912
Tssr37913 4 99031196 to 99031208 12 + TSS region transcription start site region 37913
Tssr37914 4 99031286 to 99031303 17 + TSS region transcription start site region 37914
Tssr37915 4 99031336 to 99031347 11 + TSS region transcription start site region 37915
Tssr37916 4 99031417 to 99031437 20 + TSS region transcription start site region 37916
Tssr37917 4 99031462 to 99031474 12 + TSS region transcription start site region 37917
Tssr37918 4 99033231 to 99033243 12 + TSS region transcription start site region 37918
Tssr37919 4 99037380 to 99037394 14 + TSS region transcription start site region 37919
Tssr37920 4 99037462 to 99037478 16 + TSS region transcription start site region 37920
Tssr37921 4 99037491 to 99037503 12 + TSS region transcription start site region 37921
Tssr37922 4 99037535 to 99037544 9 + TSS region transcription start site region 37922
Tssr37923 4 99037548 to 99037559 11 + TSS region transcription start site region 37923
Tssr37924 4 99037893 to 99037897 4 + TSS region transcription start site region 37924
Gm12852 4 99103060 to 99103778 718 - pseudogene predicted gene 12852
Tssr42520 4 99103796 to 99103833 37 - TSS region transcription start site region 42520
Gm12705 4 99116414 to 99118301 1887 + antisense lncRNA gene predicted gene 12705
Cpgi14475 4 99120181 to 99121327 1146 CpG island CpG island 14475
Tssr42521 4 99120836 to 99120853 17 - TSS region transcription start site region 42521
Tssr42522 4 99120856 to 99120894 38 - TSS region transcription start site region 42522
Tssr42523 4 99120898 to 99120935 37 - TSS region transcription start site region 42523
Tssr42524 4 99120946 to 99120962 16 - TSS region transcription start site region 42524
Tssr42525 4 99121246 to 99121255 9 - TSS region transcription start site region 42525
Tssr42526 4 99121267 to 99121278 11 - TSS region transcription start site region 42526
Tssr42527 4 99122468 to 99122480 12 - TSS region transcription start site region 42527
Tssr42528 4 99122485 to 99122497 12 - TSS region transcription start site region 42528
Gm12681 4 99146914 to 99161642 14728 - lincRNA gene predicted gene 12681
Cmmm1 4 99152846 to 99152846 0 QTL carcinoma modifier of MSM 1
Tssr37925 4 99158768 to 99158781 13 + TSS region transcription start site region 37925
Cpgi14476 4 99193833 to 99194614 781 CpG island CpG island 14476
Tssr37926 4 99193896 to 99193935 39 + TSS region transcription start site region 37926
Atg4c 4 99193934 to 99259787 65853 + protein coding gene autophagy related 4C, cysteine peptidase
Tssr37927 4 99194124 to 99194204 80 + TSS region transcription start site region 37927
Tssr37928 4 99194252 to 99194266 14 + TSS region transcription start site region 37928
Tssr37929 4 99194271 to 99194282 11 + TSS region transcription start site region 37929
Tssr42529 4 99194623 to 99194629 6 - TSS region transcription start site region 42529
Tssr37930 4 99194749 to 99194782 33 + TSS region transcription start site region 37930
Cpgi14477 4 99209724 to 99209963 239 CpG island CpG island 14477
Tssr37931 4 99224491 to 99224494 3 + TSS region transcription start site region 37931
Tssr37932 4 99240524 to 99240547 23 + TSS region transcription start site region 37932
Tssr37933 4 99253843 to 99253858 15 + TSS region transcription start site region 37933
Gm10305 4 99272671 to 99275145 2474 + unclassified gene predicted gene 10305
Gm12689 4 99295900 to 99297258 1358 + protein coding gene predicted gene 12689
Gm35379 4 99314629 to 99332908 18279 + lncRNA gene predicted gene, 35379
Gm35537 4 99342178 to 99342812 634 - lncRNA gene predicted gene, 35537
Cpgi14478 4 99343941 to 99344216 275 CpG island CpG island 14478
Spm1 4 99356158 to 99356345 187 QTL splenomegaly modifier
D4Mit58 4 99356158 to 99356345 187 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 58
Gm37556 4 99376066 to 99385712 9646 - unclassified gene predicted gene, 37556
Gm12685 4 99418498 to 99418711 213 - pseudogene predicted gene 12685
Gm12686 4 99418773 to 99419169 396 + pseudogene predicted gene 12686
Gm12684 4 99430256 to 99431254 998 - pseudogene predicted gene 12684
Cpgi14479 4 99445340 to 99445793 453 CpG island CpG island 14479
Gm12683 4 99520052 to 99520466 414 - pseudogene predicted gene 12683
Gm37117 4 99525932 to 99530662 4730 + unclassified gene predicted gene, 37117
Gm40211 4 99554786 to 99569348 14562 - lncRNA gene predicted gene, 40211
Gm12690 4 99569500 to 99573011 3511 + lincRNA gene predicted gene 12690
Tssr37934 4 99569518 to 99569534 16 + TSS region transcription start site region 37934
Cpgi14480 4 99572862 to 99573256 394 CpG island CpG island 14480
Gm12687 4 99615817 to 99616522 705 - pseudogene predicted gene 12687
Cpgi14481 4 99650266 to 99651611 1345 CpG island CpG island 14481
Tssr37935 4 99650435 to 99650452 17 + TSS region transcription start site region 37935
Cpgi14482 4 99652998 to 99654200 1202 CpG island CpG island 14482
Gm12688 4 99653607 to 99654983 1376 - lincRNA gene predicted gene 12688
Cpgi14483 4 99654690 to 99655133 443 CpG island CpG island 14483
Tssr42530 4 99655085 to 99655116 31 - TSS region transcription start site region 42530
2810439L12Rik 4 99655717 to 99656012 295 unclassified gene RIKEN cDNA 2810439L12 gene
Cpgi14484 4 99655813 to 99658329 2516 CpG island CpG island 14484
Tssr42531 4 99655987 to 99655988 1 - TSS region transcription start site region 42531
Tssr42532 4 99655998 to 99656032 34 - TSS region transcription start site region 42532
Tssr42533 4 99656035 to 99656040 5 - TSS region transcription start site region 42533
Tssr37936 4 99656129 to 99656154 25 + TSS region transcription start site region 37936
Tssr37937 4 99656164 to 99656176 12 + TSS region transcription start site region 37937
Foxd3 4 99656299 to 99658622 2323 + protein coding gene forkhead box D3
Tssr37938 4 99656328 to 99656340 12 + TSS region transcription start site region 37938
Tssr37939 4 99656355 to 99656382 27 + TSS region transcription start site region 37939
Tssr37940 4 99656662 to 99656672 10 + TSS region transcription start site region 37940
Gm23366 4 99657742 to 99657830 88 + miRNA gene predicted gene, 23366
Cpgi14485 4 99659666 to 99659885 219 CpG island CpG island 14485
Cpgi14486 4 99660340 to 99660653 313 CpG island CpG island 14486
Gm12682 4 99662541 to 99712972 50431 - antisense lncRNA gene predicted gene 12682
Cpgi14487 4 99662805 to 99663498 693 CpG island CpG island 14487
Cpgi14488 4 99715258 to 99716117 859 CpG island CpG island 14488
Tssr37941 4 99715620 to 99715635 15 + TSS region transcription start site region 37941
Tssr37942 4 99715640 to 99715682 42 + TSS region transcription start site region 37942
Alg6 4 99715664 to 99763460 47796 + protein coding gene asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
Itgb3bp 4 99765402 to 99829172 63770 - protein coding gene integrin beta 3 binding protein (beta3-endonexin)
Cpgi14489 4 99829049 to 99829772 723 CpG island CpG island 14489
Tssr42534 4 99829122 to 99829179 57 - TSS region transcription start site region 42534
Tssr42535 4 99829180 to 99829191 11 - TSS region transcription start site region 42535
Tssr42536 4 99829362 to 99829395 33 - TSS region transcription start site region 42536
Tssr37943 4 99829437 to 99829462 25 + TSS region transcription start site region 37943
Efcab7 4 99829500 to 99912785 83285 + protein coding gene EF-hand calcium binding domain 7
Tssr37944 4 99909793 to 99909799 6 + TSS region transcription start site region 37944
Gm26425 4 99909797 to 99909878 81 + snRNA gene predicted gene, 26425
Cpgi14490 4 99929310 to 99930248 938 CpG island CpG island 14490
Tssr42537 4 99929315 to 99929324 9 - TSS region transcription start site region 42537
Tssr37945 4 99929431 to 99929438 7 + TSS region transcription start site region 37945