Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:97768349-98458369

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14463 4 97772054 to 97772480 426 CpG island CpG island 14463
Tssr37847 4 97772425 to 97772511 86 + TSS region transcription start site region 37847
Nfia 4 97772734 to 98118874 346140 + protein coding gene nuclear factor I/A
Tssr37848 4 97772828 to 97772848 20 + TSS region transcription start site region 37848
Gm38709 4 97773693 to 97777427 3734 - lncRNA gene predicted gene, 38709
Cpgi14464 4 97776874 to 97778954 2080 CpG island CpG island 14464
Tssr37849 4 97777321 to 97777354 33 + TSS region transcription start site region 37849
Tssr37850 4 97777395 to 97777402 7 + TSS region transcription start site region 37850
Tssr37851 4 97777429 to 97777450 21 + TSS region transcription start site region 37851
Tssr37852 4 97777570 to 97777581 11 + TSS region transcription start site region 37852
Tssr37853 4 97777589 to 97777600 11 + TSS region transcription start site region 37853
Tssr37854 4 97777606 to 97777632 26 + TSS region transcription start site region 37854
Tssr37855 4 97777648 to 97777659 11 + TSS region transcription start site region 37855
Tssr37856 4 97777755 to 97777779 24 + TSS region transcription start site region 37856
Tssr37857 4 97777780 to 97777823 43 + TSS region transcription start site region 37857
Tssr37858 4 97777846 to 97777864 18 + TSS region transcription start site region 37858
Tssr37859 4 97777866 to 97777867 1 + TSS region transcription start site region 37859
Tssr37860 4 97777872 to 97777881 9 + TSS region transcription start site region 37860
Tssr37861 4 97777899 to 97777916 17 + TSS region transcription start site region 37861
Tssr37862 4 97777925 to 97777940 15 + TSS region transcription start site region 37862
Tssr42506 4 97778042 to 97778071 29 - TSS region transcription start site region 42506
Tssr37863 4 97778126 to 97778136 10 + TSS region transcription start site region 37863
Tssr37864 4 97830235 to 97830240 5 + TSS region transcription start site region 37864
Tssr37865 4 97860114 to 97860176 62 + TSS region transcription start site region 37865
Gm19417 4 97862410 to 97869231 6821 - lncRNA gene predicted gene, 19417
Cpgi14465 4 97868816 to 97869166 350 CpG island CpG island 14465
D4Ertd681e 4 97891146 to 97891389 243 DNA segment DNA segment, Chr 4, ERATO Doi 681, expressed
Tssr37866 4 97906153 to 97906192 39 + TSS region transcription start site region 37866
Cpgi14466 4 97910761 to 97911118 357 CpG island CpG island 14466
Gm40208 4 97930425 to 97940987 10562 + lncRNA gene predicted gene, 40208
Tssr37867 4 97930433 to 97930437 4 + TSS region transcription start site region 37867
Gm34218 4 98018556 to 98024773 6217 - lncRNA gene predicted gene, 34218
Tssr42507 4 98023062 to 98023101 39 - TSS region transcription start site region 42507
Tssr37868 4 98041581 to 98041610 29 + TSS region transcription start site region 37868
Tssr37869 4 98063072 to 98063084 12 + TSS region transcription start site region 37869
D4Ertd513e 4 98072545 to 98072774 229 DNA segment DNA segment, Chr 4, ERATO Doi 513, expressed
Cpgi14467 4 98102669 to 98102950 281 CpG island CpG island 14467
Tssr37870 4 98111475 to 98111480 5 + TSS region transcription start site region 37870
Tssr37871 4 98112024 to 98112030 6 + TSS region transcription start site region 37871
Tssr37872 4 98113349 to 98113369 20 + TSS region transcription start site region 37872
Tssr37873 4 98113707 to 98113724 17 + TSS region transcription start site region 37873
Tssr37874 4 98114831 to 98114835 4 + TSS region transcription start site region 37874
Gm34784 4 98125654 to 98131273 5619 + lncRNA gene predicted gene, 34784
Gm12691 4 98146065 to 98150261 4196 - pseudogene predicted gene 12691
D4Mit303 4 98210228 to 98210348 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 303
Gm12692 4 98234745 to 98235289 544 - pseudogene predicted gene 12692
Tssr42508 4 98235367 to 98235387 20 - TSS region transcription start site region 42508
Gm12787 4 98268083 to 98268575 492 - pseudogene predicted gene 12787
Gm24203 4 98275725 to 98275838 113 + unclassified non-coding RNA gene predicted gene, 24203
0610025J13Rik 4 98321398 to 98331791 10393 + antisense lncRNA gene RIKEN cDNA 0610025J13 gene
Cpgi14468 4 98322208 to 98322899 691 CpG island CpG island 14468
Edlmmq3 4 98325754 to 98325754 0 QTL extensor digitorum longus muscle mass QTL 3
Gm12788 4 98352427 to 98352734 307 + pseudogene predicted gene 12788
Tm2d1 4 98355370 to 98383279 27909 - protein coding gene TM2 domain containing 1
Cpgi14469 4 98382773 to 98383392 619 CpG island CpG island 14469
Tssr42509 4 98383232 to 98383280 48 - TSS region transcription start site region 42509
Gm24960 4 98383402 to 98383491 89 - snRNA gene predicted gene, 24960
Cpgi14470 4 98395527 to 98396436 909 CpG island CpG island 14470
Tssr37875 4 98395768 to 98395796 28 + TSS region transcription start site region 37875
Patj 4 98395785 to 98719603 323818 + protein coding gene PATJ, crumbs cell polarity complex component
Tssr37876 4 98395817 to 98395888 71 + TSS region transcription start site region 37876
Tssr37877 4 98395891 to 98395908 17 + TSS region transcription start site region 37877
Tssr37878 4 98396378 to 98396408 30 + TSS region transcription start site region 37878
Tssr37879 4 98436804 to 98436820 16 + TSS region transcription start site region 37879
Tssr37880 4 98436859 to 98436877 18 + TSS region transcription start site region 37880
Tssr37881 4 98436907 to 98436961 54 + TSS region transcription start site region 37881
Tssr37882 4 98436964 to 98436971 7 + TSS region transcription start site region 37882
Tssr37883 4 98437168 to 98437218 50 + TSS region transcription start site region 37883
Tssr37884 4 98437310 to 98437317 7 + TSS region transcription start site region 37884
Tssr37885 4 98437322 to 98437346 24 + TSS region transcription start site region 37885