Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:97245654-99011273

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D4Dcr13 4 97293097 to 97293189 92 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 13
Gm40207 4 97415417 to 97416629 1212 - lncRNA gene predicted gene, 40207
Gm12696 4 97521428 to 97522332 904 - pseudogene predicted gene 12696
Tssr42499 4 97521516 to 97521519 3 - TSS region transcription start site region 42499
Tssr42500 4 97523700 to 97523710 10 - TSS region transcription start site region 42500
Gm7248 4 97556404 to 97557064 660 + pseudogene predicted gene 7248
Gm12697 4 97556404 to 97557070 666 - pseudogene predicted gene 12697
E130114P18Rik 4 97567875 to 97584591 16716 - protein coding gene RIKEN cDNA E130114P18 gene
Tssr1237 4 97579496 to 97579503 7 + TSS region transcription start site region 1237
Tssr37841 4 97581688 to 97581696 8 + TSS region transcription start site region 37841
Tssr37842 4 97581698 to 97581711 13 + TSS region transcription start site region 37842
Tssr37843 4 97581782 to 97581805 23 + TSS region transcription start site region 37843
Tssr37844 4 97581916 to 97581958 42 + TSS region transcription start site region 37844
Tssr37845 4 97581961 to 97581980 19 + TSS region transcription start site region 37845
Tssr42501 4 97584580 to 97584601 21 - TSS region transcription start site region 42501
Tssr42502 4 97584605 to 97584610 5 - TSS region transcription start site region 42502
Tssr42503 4 97584612 to 97584643 31 - TSS region transcription start site region 42503
Tssr42504 4 97584663 to 97584677 14 - TSS region transcription start site region 42504
Tssr37846 4 97630315 to 97630320 5 + TSS region transcription start site region 37846
D4Mit290 4 97654214 to 97654334 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 290
Cpgi14459 4 97707713 to 97707868 155 CpG island CpG island 14459
Cpgi14460 4 97745798 to 97746307 509 CpG island CpG island 14460
Cpgi14461 4 97751003 to 97752236 1233 CpG island CpG island 14461
Tssr42505 4 97751816 to 97751861 45 - TSS region transcription start site region 42505
Gm12676 4 97754168 to 97757389 3221 - lncRNA gene predicted gene 12676
Cpgi14462 4 97757312 to 97758117 805 CpG island CpG island 14462
Cpgi14463 4 97772054 to 97772480 426 CpG island CpG island 14463
Tssr37847 4 97772425 to 97772511 86 + TSS region transcription start site region 37847
Nfia 4 97772734 to 98118874 346140 + protein coding gene nuclear factor I/A
Tssr37848 4 97772828 to 97772848 20 + TSS region transcription start site region 37848
Gm38709 4 97773693 to 97777427 3734 - lncRNA gene predicted gene, 38709
Cpgi14464 4 97776874 to 97778954 2080 CpG island CpG island 14464
Tssr37849 4 97777321 to 97777354 33 + TSS region transcription start site region 37849
Tssr37850 4 97777395 to 97777402 7 + TSS region transcription start site region 37850
Tssr37851 4 97777429 to 97777450 21 + TSS region transcription start site region 37851
Tssr37852 4 97777570 to 97777581 11 + TSS region transcription start site region 37852
Tssr37853 4 97777589 to 97777600 11 + TSS region transcription start site region 37853
Tssr37854 4 97777606 to 97777632 26 + TSS region transcription start site region 37854
Tssr37855 4 97777648 to 97777659 11 + TSS region transcription start site region 37855
Tssr37856 4 97777755 to 97777779 24 + TSS region transcription start site region 37856
Tssr37857 4 97777780 to 97777823 43 + TSS region transcription start site region 37857
Tssr37858 4 97777846 to 97777864 18 + TSS region transcription start site region 37858
Tssr37859 4 97777866 to 97777867 1 + TSS region transcription start site region 37859
Tssr37860 4 97777872 to 97777881 9 + TSS region transcription start site region 37860
Tssr37861 4 97777899 to 97777916 17 + TSS region transcription start site region 37861
Tssr37862 4 97777925 to 97777940 15 + TSS region transcription start site region 37862
Tssr42506 4 97778042 to 97778071 29 - TSS region transcription start site region 42506
Tssr37863 4 97778126 to 97778136 10 + TSS region transcription start site region 37863
Tssr37864 4 97830235 to 97830240 5 + TSS region transcription start site region 37864
Tssr37865 4 97860114 to 97860176 62 + TSS region transcription start site region 37865
Gm19417 4 97862410 to 97869231 6821 - lncRNA gene predicted gene, 19417
Cpgi14465 4 97868816 to 97869166 350 CpG island CpG island 14465
D4Ertd681e 4 97891146 to 97891389 243 DNA segment DNA segment, Chr 4, ERATO Doi 681, expressed
Tssr37866 4 97906153 to 97906192 39 + TSS region transcription start site region 37866
Cpgi14466 4 97910761 to 97911118 357 CpG island CpG island 14466
Gm40208 4 97930425 to 97940987 10562 + lncRNA gene predicted gene, 40208
Tssr37867 4 97930433 to 97930437 4 + TSS region transcription start site region 37867
Gm34218 4 98018556 to 98024773 6217 - lncRNA gene predicted gene, 34218
Tssr42507 4 98023062 to 98023101 39 - TSS region transcription start site region 42507
Tssr37868 4 98041581 to 98041610 29 + TSS region transcription start site region 37868
Tssr37869 4 98063072 to 98063084 12 + TSS region transcription start site region 37869
D4Ertd513e 4 98072545 to 98072774 229 DNA segment DNA segment, Chr 4, ERATO Doi 513, expressed
Cpgi14467 4 98102669 to 98102950 281 CpG island CpG island 14467
Tssr37870 4 98111475 to 98111480 5 + TSS region transcription start site region 37870
Tssr37871 4 98112024 to 98112030 6 + TSS region transcription start site region 37871
Tssr37872 4 98113349 to 98113369 20 + TSS region transcription start site region 37872
Tssr37873 4 98113707 to 98113724 17 + TSS region transcription start site region 37873
Tssr37874 4 98114831 to 98114835 4 + TSS region transcription start site region 37874
Gm34784 4 98125654 to 98131273 5619 + lncRNA gene predicted gene, 34784
Gm12691 4 98146065 to 98150261 4196 - pseudogene predicted gene 12691
D4Mit303 4 98210228 to 98210348 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 303
Gm12692 4 98234745 to 98235289 544 - pseudogene predicted gene 12692
Tssr42508 4 98235367 to 98235387 20 - TSS region transcription start site region 42508
Gm12787 4 98268083 to 98268575 492 - pseudogene predicted gene 12787
Gm24203 4 98275725 to 98275838 113 + unclassified non-coding RNA gene predicted gene, 24203
0610025J13Rik 4 98321398 to 98331791 10393 + antisense lncRNA gene RIKEN cDNA 0610025J13 gene
Cpgi14468 4 98322208 to 98322899 691 CpG island CpG island 14468
Edlmmq3 4 98325754 to 98325754 0 QTL extensor digitorum longus muscle mass QTL 3
Gm12788 4 98352427 to 98352734 307 + pseudogene predicted gene 12788
Tm2d1 4 98355370 to 98383279 27909 - protein coding gene TM2 domain containing 1
Cpgi14469 4 98382773 to 98383392 619 CpG island CpG island 14469
Tssr42509 4 98383232 to 98383280 48 - TSS region transcription start site region 42509
Gm24960 4 98383402 to 98383491 89 - snRNA gene predicted gene, 24960
Cpgi14470 4 98395527 to 98396436 909 CpG island CpG island 14470
Tssr37875 4 98395768 to 98395796 28 + TSS region transcription start site region 37875
Patj 4 98395785 to 98719603 323818 + protein coding gene PATJ, crumbs cell polarity complex component
Tssr37876 4 98395817 to 98395888 71 + TSS region transcription start site region 37876
Tssr37877 4 98395891 to 98395908 17 + TSS region transcription start site region 37877
Tssr37878 4 98396378 to 98396408 30 + TSS region transcription start site region 37878
Tssr37879 4 98436804 to 98436820 16 + TSS region transcription start site region 37879
Tssr37880 4 98436859 to 98436877 18 + TSS region transcription start site region 37880
Tssr37881 4 98436907 to 98436961 54 + TSS region transcription start site region 37881
Tssr37882 4 98436964 to 98436971 7 + TSS region transcription start site region 37882
Tssr37883 4 98437168 to 98437218 50 + TSS region transcription start site region 37883
Tssr37884 4 98437310 to 98437317 7 + TSS region transcription start site region 37884
Tssr37885 4 98437322 to 98437346 24 + TSS region transcription start site region 37885
Tssr37886 4 98541617 to 98541619 2 + TSS region transcription start site region 37886
Tssr1238 4 98546614 to 98546624 10 + TSS region transcription start site region 1238
Tssr37887 4 98546631 to 98546655 24 + TSS region transcription start site region 37887
Tssr37888 4 98546662 to 98546689 27 + TSS region transcription start site region 37888
Tssr37889 4 98546696 to 98546709 13 + TSS region transcription start site region 37889
Tssr37890 4 98546710 to 98546739 29 + TSS region transcription start site region 37890
Tssr37891 4 98546746 to 98546763 17 + TSS region transcription start site region 37891
Tssr37892 4 98546797 to 98546805 8 + TSS region transcription start site region 37892
Tssr37893 4 98546897 to 98546909 12 + TSS region transcription start site region 37893
Tssr37894 4 98546919 to 98546959 40 + TSS region transcription start site region 37894
Tssr37895 4 98549678 to 98549717 39 + TSS region transcription start site region 37895
Gm22625 4 98557740 to 98557865 125 - miRNA gene predicted gene, 22625
Gm40210 4 98579527 to 98588009 8482 + lncRNA gene predicted gene, 40210
D4Mit28 4 98657302 to 98657442 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 28
Gm26154 4 98661637 to 98661732 95 + miRNA gene predicted gene, 26154
Gm12846 4 98664366 to 98666135 1769 + pseudogene predicted gene 12846
Gm35137 4 98696893 to 98699781 2888 - lncRNA gene predicted gene, 35137
Tssr42510 4 98699101 to 98699111 10 - TSS region transcription start site region 42510
Tssr42511 4 98699116 to 98699129 13 - TSS region transcription start site region 42511
Tssr42512 4 98699137 to 98699148 11 - TSS region transcription start site region 42512
Gm35073 4 98700445 to 98700755 310 - lncRNA gene predicted gene, 35073
Tssr42513 4 98702448 to 98702471 23 - TSS region transcription start site region 42513
D4Mit246 4 98707711 to 98707806 95 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 246
Cpgi14471 4 98726536 to 98727597 1061 CpG island CpG island 14471
Tssr42514 4 98726611 to 98726661 50 - TSS region transcription start site region 42514
Tssr37896 4 98726744 to 98726766 22 + TSS region transcription start site region 37896
L1td1 4 98726754 to 98738486 11732 + protein coding gene LINE-1 type transposase domain containing 1
Tssr37897 4 98726773 to 98726783 10 + TSS region transcription start site region 37897
Tssr37898 4 98726786 to 98726805 19 + TSS region transcription start site region 37898
Tssr42515 4 98727965 to 98727978 13 - TSS region transcription start site region 42515
Tssr37899 4 98728358 to 98728373 15 + TSS region transcription start site region 37899
Tssr42516 4 98733522 to 98733533 11 - TSS region transcription start site region 42516
Cpgi14472 4 98733764 to 98734071 307 CpG island CpG island 14472
Tssr37900 4 98733949 to 98733952 3 + TSS region transcription start site region 37900
Gm17376 4 98745735 to 98745822 87 + pseudogene predicted gene, 17376
Kank4 4 98754898 to 98817537 62639 - protein coding gene KN motif and ankyrin repeat domains 4
Kank4os 4 98793768 to 98798900 5132 + antisense lncRNA gene KN motif and ankyrin repeat domains 4, opposite strand
Cpgi14473 4 98816864 to 98818112 1248 CpG island CpG island 14473
Tssr42517 4 98817687 to 98817706 19 - TSS region transcription start site region 42517
I0C0044D17Rik 4 98818475 to 98823840 5365 - protein coding gene RIKEN cDNA I0C0044D17 gene
Gm12851 4 98855614 to 98856034 420 + pseudogene predicted gene 12851
Cpgi14474 4 98922742 to 98924872 2130 CpG island CpG island 14474
Tssr37901 4 98922928 to 98922937 9 + TSS region transcription start site region 37901
Tssr37902 4 98923659 to 98923676 17 + TSS region transcription start site region 37902
Tssr37903 4 98923724 to 98923743 19 + TSS region transcription start site region 37903
Tssr37904 4 98923751 to 98923777 26 + TSS region transcription start site region 37904
Usp1 4 98923810 to 98935543 11733 + protein coding gene ubiquitin specific peptidase 1
Tssr37905 4 98923815 to 98923842 27 + TSS region transcription start site region 37905
Tssr37906 4 98923845 to 98923893 48 + TSS region transcription start site region 37906
Tssr37907 4 98923908 to 98923976 68 + TSS region transcription start site region 37907
Dock7 4 98936671 to 99120915 184244 - protein coding gene dedicator of cytokinesis 7
Tssr37908 4 98978709 to 98978734 25 + TSS region transcription start site region 37908
Tssr42518 4 98999975 to 98999981 6 - TSS region transcription start site region 42518
Lbw2 4 128115487 to 98657302 -29458185 QTL lupus NZB x NZW 2