Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:96002875-99149591

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245 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hook1 4 95967240 to 96025413 58173 + protein coding gene hook microtubule tethering protein 1
2900072D07Rik 4 96029758 to 96030748 990 unclassified gene RIKEN cDNA 2900072D07 gene
Cyp2j13 4 96042660 to 96077566 34906 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 13
Hspe1-ps6 4 96072424 to 96072706 282 - pseudogene heat shock protein 1 (chaperonin 10), pseudogene 6
Tssr42466 4 96077509 to 96077547 38 - TSS region transcription start site region 42466
Cyp2j12 4 96099318 to 96141152 41834 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 12
Tssr42467 4 96141149 to 96141158 9 - TSS region transcription start site region 42467
Cyp2j7-ps3 4 96151653 to 96151858 205 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 3
Cyp2j7-ps2 4 96170207 to 96170385 178 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 2
Cyp2j7-ps1 4 96190071 to 96190243 172 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 1
Cyp2j7 4 96195197 to 96236659 41462 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 7
Tssr1236 4 96244897 to 96244898 1 + TSS region transcription start site region 1236
Cyp2j15-ps 4 96245560 to 96274270 28710 - pseudogene cytochrome P450, family 2, subfamily j, member 15, pseudogene
Cyp2j11 4 96294508 to 96348662 54154 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 11
Tssr42468 4 96348573 to 96348583 10 - TSS region transcription start site region 42468
Tssr42469 4 96348599 to 96348618 19 - TSS region transcription start site region 42469
Tssr42470 4 96348625 to 96348636 11 - TSS region transcription start site region 42470
Tssr42471 4 96348650 to 96348677 27 - TSS region transcription start site region 42471
Cyp2j14-ps 4 96356311 to 96380211 23900 - pseudogene cytochrome P450, family 2, subfamily j, member 14, pseudogene
Cyp2j8 4 96444596 to 96507386 62790 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 8
Ltpr4b 4 96477514 to 96477630 116 QTL Leishmania tropica response 4b
D4Mit153 4 96477514 to 96477630 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 153
Ltpr4c 4 96477514 to 96477630 116 QTL Leishmania tropica response 4c
Ltpr4 4 96477514 to 96477630 116 QTL Leishmania tropica response 4
Ltpr4a 4 96477514 to 96477630 116 QTL Leishmania tropica response 4a
Tssr42472 4 96507328 to 96507348 20 - TSS region transcription start site region 42472
Tssr42473 4 96507396 to 96507399 3 - TSS region transcription start site region 42473
Tssr42474 4 96507445 to 96507452 7 - TSS region transcription start site region 42474
Tssr42475 4 96507477 to 96507486 9 - TSS region transcription start site region 42475
Cyp2j6 4 96516138 to 96553661 37523 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 6
Tssr42476 4 96547804 to 96547809 5 - TSS region transcription start site region 42476
Tssr42477 4 96553470 to 96553549 79 - TSS region transcription start site region 42477
Tssr42478 4 96553551 to 96553562 11 - TSS region transcription start site region 42478
Tssr42479 4 96553565 to 96553576 11 - TSS region transcription start site region 42479
Tssr42480 4 96553589 to 96553596 7 - TSS region transcription start site region 42480
Tssr42481 4 96553617 to 96553664 47 - TSS region transcription start site region 42481
Cyp2j9 4 96568429 to 96591578 23149 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 9
Tssr42482 4 96591368 to 96591395 27 - TSS region transcription start site region 42482
Tssr42483 4 96591405 to 96591454 49 - TSS region transcription start site region 42483
Tssr42484 4 96591475 to 96591505 30 - TSS region transcription start site region 42484
Tssr42485 4 96591555 to 96591594 39 - TSS region transcription start site region 42485
Cyp2j5 4 96628773 to 96664154 35381 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 5
Tssr42486 4 96635828 to 96635830 2 - TSS region transcription start site region 42486
Tssr42487 4 96642729 to 96642732 3 - TSS region transcription start site region 42487
Tssr42488 4 96658670 to 96658681 11 - TSS region transcription start site region 42488
Tssr42489 4 96658722 to 96658757 35 - TSS region transcription start site region 42489
Tssr42490 4 96664031 to 96664044 13 - TSS region transcription start site region 42490
Tssr42491 4 96664053 to 96664064 11 - TSS region transcription start site region 42491
Tssr42492 4 96664066 to 96664073 7 - TSS region transcription start site region 42492
Tssr42493 4 96664078 to 96664098 20 - TSS region transcription start site region 42493
Tssr42494 4 96664112 to 96664162 50 - TSS region transcription start site region 42494
Tssr42495 4 96664208 to 96664219 11 - TSS region transcription start site region 42495
Gm12695 4 96723647 to 96785186 61539 - protein coding gene predicted gene 12695
D4Mit117 4 96742762 to 96742973 211 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 117
D4Mit231 4 96752327 to 96752460 133 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 231
D4Mit154.1 4 96785565 to 96785698 133 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 154.1
D4Mit154 4 96785683 to 96785824 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 154
Tssr42496 4 96786734 to 96786737 3 - TSS region transcription start site region 42496
Tssr42497 4 96786744 to 96786765 21 - TSS region transcription start site region 42497
Tssr42498 4 96786773 to 96786784 11 - TSS region transcription start site region 42498
Gm34053 4 96787317 to 96794899 7582 + lncRNA gene predicted gene, 34053
Gm27579 4 96916945 to 96917007 62 + snRNA gene predicted gene, 27579
Gm27521 4 96917020 to 96917083 63 + snRNA gene predicted gene, 27521
Gm10192 4 97182840 to 97183166 326 - protein coding gene predicted gene 10192
D4Dcr13 4 97293097 to 97293189 92 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 13
Gm40207 4 97415417 to 97416629 1212 - lncRNA gene predicted gene, 40207
Gm12696 4 97521428 to 97522332 904 - pseudogene predicted gene 12696
Tssr42499 4 97521516 to 97521519 3 - TSS region transcription start site region 42499
Tssr42500 4 97523700 to 97523710 10 - TSS region transcription start site region 42500
Gm7248 4 97556404 to 97557064 660 + pseudogene predicted gene 7248
Gm12697 4 97556404 to 97557070 666 - pseudogene predicted gene 12697
E130114P18Rik 4 97567875 to 97584591 16716 - protein coding gene RIKEN cDNA E130114P18 gene
Tssr1237 4 97579496 to 97579503 7 + TSS region transcription start site region 1237
Tssr37841 4 97581688 to 97581696 8 + TSS region transcription start site region 37841
Tssr37842 4 97581698 to 97581711 13 + TSS region transcription start site region 37842
Tssr37843 4 97581782 to 97581805 23 + TSS region transcription start site region 37843
Tssr37844 4 97581916 to 97581958 42 + TSS region transcription start site region 37844
Tssr37845 4 97581961 to 97581980 19 + TSS region transcription start site region 37845
Tssr42501 4 97584580 to 97584601 21 - TSS region transcription start site region 42501
Tssr42502 4 97584605 to 97584610 5 - TSS region transcription start site region 42502
Tssr42503 4 97584612 to 97584643 31 - TSS region transcription start site region 42503
Tssr42504 4 97584663 to 97584677 14 - TSS region transcription start site region 42504
Tssr37846 4 97630315 to 97630320 5 + TSS region transcription start site region 37846
D4Mit290 4 97654214 to 97654334 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 290
Cpgi14459 4 97707713 to 97707868 155 CpG island CpG island 14459
Cpgi14460 4 97745798 to 97746307 509 CpG island CpG island 14460
Cpgi14461 4 97751003 to 97752236 1233 CpG island CpG island 14461
Tssr42505 4 97751816 to 97751861 45 - TSS region transcription start site region 42505
Gm12676 4 97754168 to 97757389 3221 - lncRNA gene predicted gene 12676
Cpgi14462 4 97757312 to 97758117 805 CpG island CpG island 14462
Cpgi14463 4 97772054 to 97772480 426 CpG island CpG island 14463
Tssr37847 4 97772425 to 97772511 86 + TSS region transcription start site region 37847
Nfia 4 97772734 to 98118874 346140 + protein coding gene nuclear factor I/A
Tssr37848 4 97772828 to 97772848 20 + TSS region transcription start site region 37848
Gm38709 4 97773693 to 97777427 3734 - lncRNA gene predicted gene, 38709
Cpgi14464 4 97776874 to 97778954 2080 CpG island CpG island 14464
Tssr37849 4 97777321 to 97777354 33 + TSS region transcription start site region 37849
Tssr37850 4 97777395 to 97777402 7 + TSS region transcription start site region 37850
Tssr37851 4 97777429 to 97777450 21 + TSS region transcription start site region 37851
Tssr37852 4 97777570 to 97777581 11 + TSS region transcription start site region 37852
Tssr37853 4 97777589 to 97777600 11 + TSS region transcription start site region 37853
Tssr37854 4 97777606 to 97777632 26 + TSS region transcription start site region 37854
Tssr37855 4 97777648 to 97777659 11 + TSS region transcription start site region 37855
Tssr37856 4 97777755 to 97777779 24 + TSS region transcription start site region 37856
Tssr37857 4 97777780 to 97777823 43 + TSS region transcription start site region 37857
Tssr37858 4 97777846 to 97777864 18 + TSS region transcription start site region 37858
Tssr37859 4 97777866 to 97777867 1 + TSS region transcription start site region 37859
Tssr37860 4 97777872 to 97777881 9 + TSS region transcription start site region 37860
Tssr37861 4 97777899 to 97777916 17 + TSS region transcription start site region 37861
Tssr37862 4 97777925 to 97777940 15 + TSS region transcription start site region 37862
Tssr42506 4 97778042 to 97778071 29 - TSS region transcription start site region 42506
Tssr37863 4 97778126 to 97778136 10 + TSS region transcription start site region 37863
Tssr37864 4 97830235 to 97830240 5 + TSS region transcription start site region 37864
Tssr37865 4 97860114 to 97860176 62 + TSS region transcription start site region 37865
Gm19417 4 97862410 to 97869231 6821 - lncRNA gene predicted gene, 19417
Cpgi14465 4 97868816 to 97869166 350 CpG island CpG island 14465
D4Ertd681e 4 97891146 to 97891389 243 DNA segment DNA segment, Chr 4, ERATO Doi 681, expressed
Tssr37866 4 97906153 to 97906192 39 + TSS region transcription start site region 37866
Cpgi14466 4 97910761 to 97911118 357 CpG island CpG island 14466
Gm40208 4 97930425 to 97940987 10562 + lncRNA gene predicted gene, 40208
Tssr37867 4 97930433 to 97930437 4 + TSS region transcription start site region 37867
Gm34218 4 98018556 to 98024773 6217 - lncRNA gene predicted gene, 34218
Tssr42507 4 98023062 to 98023101 39 - TSS region transcription start site region 42507
Tssr37868 4 98041581 to 98041610 29 + TSS region transcription start site region 37868
Tssr37869 4 98063072 to 98063084 12 + TSS region transcription start site region 37869
D4Ertd513e 4 98072545 to 98072774 229 DNA segment DNA segment, Chr 4, ERATO Doi 513, expressed
Cpgi14467 4 98102669 to 98102950 281 CpG island CpG island 14467
Tssr37870 4 98111475 to 98111480 5 + TSS region transcription start site region 37870
Tssr37871 4 98112024 to 98112030 6 + TSS region transcription start site region 37871
Tssr37872 4 98113349 to 98113369 20 + TSS region transcription start site region 37872
Tssr37873 4 98113707 to 98113724 17 + TSS region transcription start site region 37873
Tssr37874 4 98114831 to 98114835 4 + TSS region transcription start site region 37874
Gm34784 4 98125654 to 98131273 5619 + lncRNA gene predicted gene, 34784
Gm12691 4 98146065 to 98150261 4196 - pseudogene predicted gene 12691
D4Mit303 4 98210228 to 98210348 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 303
Gm12692 4 98234745 to 98235289 544 - pseudogene predicted gene 12692
Tssr42508 4 98235367 to 98235387 20 - TSS region transcription start site region 42508
Gm12787 4 98268083 to 98268575 492 - pseudogene predicted gene 12787
Gm24203 4 98275725 to 98275838 113 + unclassified non-coding RNA gene predicted gene, 24203
0610025J13Rik 4 98321398 to 98331791 10393 + antisense lncRNA gene RIKEN cDNA 0610025J13 gene
Cpgi14468 4 98322208 to 98322899 691 CpG island CpG island 14468
Edlmmq3 4 98325754 to 98325754 0 QTL extensor digitorum longus muscle mass QTL 3
Gm12788 4 98352427 to 98352734 307 + pseudogene predicted gene 12788
Tm2d1 4 98355370 to 98383279 27909 - protein coding gene TM2 domain containing 1
Cpgi14469 4 98382773 to 98383392 619 CpG island CpG island 14469
Tssr42509 4 98383232 to 98383280 48 - TSS region transcription start site region 42509
Gm24960 4 98383402 to 98383491 89 - snRNA gene predicted gene, 24960
Cpgi14470 4 98395527 to 98396436 909 CpG island CpG island 14470
Tssr37875 4 98395768 to 98395796 28 + TSS region transcription start site region 37875
Patj 4 98395785 to 98719603 323818 + protein coding gene PATJ, crumbs cell polarity complex component
Tssr37876 4 98395817 to 98395888 71 + TSS region transcription start site region 37876
Tssr37877 4 98395891 to 98395908 17 + TSS region transcription start site region 37877
Tssr37878 4 98396378 to 98396408 30 + TSS region transcription start site region 37878
Tssr37879 4 98436804 to 98436820 16 + TSS region transcription start site region 37879
Tssr37880 4 98436859 to 98436877 18 + TSS region transcription start site region 37880
Tssr37881 4 98436907 to 98436961 54 + TSS region transcription start site region 37881
Tssr37882 4 98436964 to 98436971 7 + TSS region transcription start site region 37882
Tssr37883 4 98437168 to 98437218 50 + TSS region transcription start site region 37883
Tssr37884 4 98437310 to 98437317 7 + TSS region transcription start site region 37884
Tssr37885 4 98437322 to 98437346 24 + TSS region transcription start site region 37885
Tssr37886 4 98541617 to 98541619 2 + TSS region transcription start site region 37886
Tssr1238 4 98546614 to 98546624 10 + TSS region transcription start site region 1238
Tssr37887 4 98546631 to 98546655 24 + TSS region transcription start site region 37887
Tssr37888 4 98546662 to 98546689 27 + TSS region transcription start site region 37888
Tssr37889 4 98546696 to 98546709 13 + TSS region transcription start site region 37889
Tssr37890 4 98546710 to 98546739 29 + TSS region transcription start site region 37890
Tssr37891 4 98546746 to 98546763 17 + TSS region transcription start site region 37891
Tssr37892 4 98546797 to 98546805 8 + TSS region transcription start site region 37892
Tssr37893 4 98546897 to 98546909 12 + TSS region transcription start site region 37893
Tssr37894 4 98546919 to 98546959 40 + TSS region transcription start site region 37894
Tssr37895 4 98549678 to 98549717 39 + TSS region transcription start site region 37895
Gm22625 4 98557740 to 98557865 125 - miRNA gene predicted gene, 22625
Gm40210 4 98579527 to 98588009 8482 + lncRNA gene predicted gene, 40210
D4Mit28 4 98657302 to 98657442 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 28
Gm26154 4 98661637 to 98661732 95 + miRNA gene predicted gene, 26154
Gm12846 4 98664366 to 98666135 1769 + pseudogene predicted gene 12846
Gm35137 4 98696893 to 98699781 2888 - lncRNA gene predicted gene, 35137
Tssr42510 4 98699101 to 98699111 10 - TSS region transcription start site region 42510
Tssr42511 4 98699116 to 98699129 13 - TSS region transcription start site region 42511
Tssr42512 4 98699137 to 98699148 11 - TSS region transcription start site region 42512
Gm35073 4 98700445 to 98700755 310 - lncRNA gene predicted gene, 35073
Tssr42513 4 98702448 to 98702471 23 - TSS region transcription start site region 42513
D4Mit246 4 98707711 to 98707806 95 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 246
Cpgi14471 4 98726536 to 98727597 1061 CpG island CpG island 14471
Tssr42514 4 98726611 to 98726661 50 - TSS region transcription start site region 42514
Tssr37896 4 98726744 to 98726766 22 + TSS region transcription start site region 37896
L1td1 4 98726754 to 98738486 11732 + protein coding gene LINE-1 type transposase domain containing 1
Tssr37897 4 98726773 to 98726783 10 + TSS region transcription start site region 37897
Tssr37898 4 98726786 to 98726805 19 + TSS region transcription start site region 37898
Tssr42515 4 98727965 to 98727978 13 - TSS region transcription start site region 42515
Tssr37899 4 98728358 to 98728373 15 + TSS region transcription start site region 37899
Tssr42516 4 98733522 to 98733533 11 - TSS region transcription start site region 42516
Cpgi14472 4 98733764 to 98734071 307 CpG island CpG island 14472
Tssr37900 4 98733949 to 98733952 3 + TSS region transcription start site region 37900
Gm17376 4 98745735 to 98745822 87 + pseudogene predicted gene, 17376
Kank4 4 98754898 to 98817537 62639 - protein coding gene KN motif and ankyrin repeat domains 4
Kank4os 4 98793768 to 98798900 5132 + antisense lncRNA gene KN motif and ankyrin repeat domains 4, opposite strand
Cpgi14473 4 98816864 to 98818112 1248 CpG island CpG island 14473
Tssr42517 4 98817687 to 98817706 19 - TSS region transcription start site region 42517
I0C0044D17Rik 4 98818475 to 98823840 5365 - protein coding gene RIKEN cDNA I0C0044D17 gene