Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:95362509-96792547

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29064 4 95401978 to 95402790 812 - lincRNA gene predicted gene 29064
Gm830 4 95466913 to 95487394 20481 - unclassified non-coding RNA gene predicted gene 830
Gm12707 4 95486896 to 95487630 734 + lncRNA gene predicted gene 12707
Tssr42462 4 95487381 to 95487398 17 - TSS region transcription start site region 42462
Tssr42463 4 95487413 to 95487454 41 - TSS region transcription start site region 42463
Tssr1234 4 95505129 to 95505131 2 + TSS region transcription start site region 1234
Gm25004 4 95524044 to 95524204 160 + snRNA gene predicted gene, 25004
Gm40206 4 95553418 to 95557366 3948 - lncRNA gene predicted gene, 40206
Tssr37824 4 95557494 to 95557544 50 + TSS region transcription start site region 37824
Fggy 4 95557507 to 95926939 369432 + protein coding gene FGGY carbohydrate kinase domain containing
Gm20651 4 95561831 to 95562159 328 - pseudogene predicted gene 20651
Tssr37825 4 95579417 to 95579428 11 + TSS region transcription start site region 37825
Tssr37826 4 95579446 to 95579462 16 + TSS region transcription start site region 37826
Tssr37827 4 95579463 to 95579499 36 + TSS region transcription start site region 37827
4930509A12Rik 4 95634742 to 95635230 488 unclassified gene RIKEN cDNA 4930509A12 gene
Tssr37828 4 95637414 to 95637418 4 + TSS region transcription start site region 37828
Tssr37829 4 95681641 to 95681649 8 + TSS region transcription start site region 37829
Tssr37830 4 95738372 to 95738400 28 + TSS region transcription start site region 37830
Tssr37831 4 95738409 to 95738424 15 + TSS region transcription start site region 37831
Tssr42464 4 95741236 to 95741240 4 - TSS region transcription start site region 42464
Tssr37832 4 95850760 to 95850765 5 + TSS region transcription start site region 37832
Tssr1235 4 95934126 to 95934133 7 - TSS region transcription start site region 1235
Tssr37833 4 95947146 to 95947155 9 + TSS region transcription start site region 37833
9530080O11Rik 4 95959715 to 95967655 7940 - lncRNA gene RIKEN cDNA 9530080O11 gene
Cpgi14458 4 95966843 to 95967931 1088 CpG island CpG island 14458
Tssr42465 4 95967005 to 95967017 12 - TSS region transcription start site region 42465
Tssr37834 4 95967117 to 95967145 28 + TSS region transcription start site region 37834
Tssr37835 4 95967205 to 95967320 115 + TSS region transcription start site region 37835
Hook1 4 95967240 to 96025413 58173 + protein coding gene hook microtubule tethering protein 1
Tssr37836 4 95967322 to 95967381 59 + TSS region transcription start site region 37836
Tssr37837 4 95967384 to 95967403 19 + TSS region transcription start site region 37837
Tssr37838 4 95967405 to 95967426 21 + TSS region transcription start site region 37838
Tssr37839 4 95969919 to 95969928 9 + TSS region transcription start site region 37839
Tssr37840 4 95969950 to 95969959 9 + TSS region transcription start site region 37840
2900072D07Rik 4 96029758 to 96030748 990 unclassified gene RIKEN cDNA 2900072D07 gene
Cyp2j13 4 96042660 to 96077566 34906 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 13
Hspe1-ps6 4 96072424 to 96072706 282 - pseudogene heat shock protein 1 (chaperonin 10), pseudogene 6
Tssr42466 4 96077509 to 96077547 38 - TSS region transcription start site region 42466
Cyp2j12 4 96099318 to 96141152 41834 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 12
Tssr42467 4 96141149 to 96141158 9 - TSS region transcription start site region 42467
Cyp2j7-ps3 4 96151653 to 96151858 205 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 3
Cyp2j7-ps2 4 96170207 to 96170385 178 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 2
Cyp2j7-ps1 4 96190071 to 96190243 172 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 1
Cyp2j7 4 96195197 to 96236659 41462 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 7
Tssr1236 4 96244897 to 96244898 1 + TSS region transcription start site region 1236
Cyp2j15-ps 4 96245560 to 96274270 28710 - pseudogene cytochrome P450, family 2, subfamily j, member 15, pseudogene
Cyp2j11 4 96294508 to 96348662 54154 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 11
Tssr42468 4 96348573 to 96348583 10 - TSS region transcription start site region 42468
Tssr42469 4 96348599 to 96348618 19 - TSS region transcription start site region 42469
Tssr42470 4 96348625 to 96348636 11 - TSS region transcription start site region 42470
Tssr42471 4 96348650 to 96348677 27 - TSS region transcription start site region 42471
Cyp2j14-ps 4 96356311 to 96380211 23900 - pseudogene cytochrome P450, family 2, subfamily j, member 14, pseudogene
Cyp2j8 4 96444596 to 96507386 62790 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 8
D4Mit153 4 96477514 to 96477630 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 153
Ltpr4c 4 96477514 to 96477630 116 QTL Leishmania tropica response 4c
Ltpr4 4 96477514 to 96477630 116 QTL Leishmania tropica response 4
Ltpr4a 4 96477514 to 96477630 116 QTL Leishmania tropica response 4a
Ltpr4b 4 96477514 to 96477630 116 QTL Leishmania tropica response 4b
Tssr42472 4 96507328 to 96507348 20 - TSS region transcription start site region 42472
Tssr42473 4 96507396 to 96507399 3 - TSS region transcription start site region 42473
Tssr42474 4 96507445 to 96507452 7 - TSS region transcription start site region 42474
Tssr42475 4 96507477 to 96507486 9 - TSS region transcription start site region 42475
Cyp2j6 4 96516138 to 96553661 37523 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 6
Tssr42476 4 96547804 to 96547809 5 - TSS region transcription start site region 42476
Tssr42477 4 96553470 to 96553549 79 - TSS region transcription start site region 42477
Tssr42478 4 96553551 to 96553562 11 - TSS region transcription start site region 42478
Tssr42479 4 96553565 to 96553576 11 - TSS region transcription start site region 42479
Tssr42480 4 96553589 to 96553596 7 - TSS region transcription start site region 42480
Tssr42481 4 96553617 to 96553664 47 - TSS region transcription start site region 42481
Cyp2j9 4 96568429 to 96591578 23149 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 9
Tssr42482 4 96591368 to 96591395 27 - TSS region transcription start site region 42482
Tssr42483 4 96591405 to 96591454 49 - TSS region transcription start site region 42483
Tssr42484 4 96591475 to 96591505 30 - TSS region transcription start site region 42484
Tssr42485 4 96591555 to 96591594 39 - TSS region transcription start site region 42485
Cyp2j5 4 96628773 to 96664154 35381 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 5
Tssr42486 4 96635828 to 96635830 2 - TSS region transcription start site region 42486
Tssr42487 4 96642729 to 96642732 3 - TSS region transcription start site region 42487
Tssr42488 4 96658670 to 96658681 11 - TSS region transcription start site region 42488
Tssr42489 4 96658722 to 96658757 35 - TSS region transcription start site region 42489
Tssr42490 4 96664031 to 96664044 13 - TSS region transcription start site region 42490
Tssr42491 4 96664053 to 96664064 11 - TSS region transcription start site region 42491
Tssr42492 4 96664066 to 96664073 7 - TSS region transcription start site region 42492
Tssr42493 4 96664078 to 96664098 20 - TSS region transcription start site region 42493
Tssr42494 4 96664112 to 96664162 50 - TSS region transcription start site region 42494
Tssr42495 4 96664208 to 96664219 11 - TSS region transcription start site region 42495
Gm12695 4 96723647 to 96785186 61539 - protein coding gene predicted gene 12695
D4Mit117 4 96742762 to 96742973 211 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 117
D4Mit231 4 96752327 to 96752460 133 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 231
D4Mit154.1 4 96785565 to 96785698 133 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 154.1
D4Mit154 4 96785683 to 96785824 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 154
Tssr42496 4 96786734 to 96786737 3 - TSS region transcription start site region 42496
Tssr42497 4 96786744 to 96786765 21 - TSS region transcription start site region 42497
Tssr42498 4 96786773 to 96786784 11 - TSS region transcription start site region 42498
Gm34053 4 96787317 to 96794899 7582 + lncRNA gene predicted gene, 34053