Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:94877507-96606939

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlsr1 4 88682921 to 95069538 6386617 QTL thymic lymphoma suppressor region 1
Eqtn 4 94907267 to 94928843 21576 - protein coding gene equatorin, sperm acrosome associated
Tssr42450 4 94928789 to 94928815 26 - TSS region transcription start site region 42450
Tssr42451 4 94928820 to 94928848 28 - TSS region transcription start site region 42451
Gm12693 4 94935621 to 94936103 482 + pseudogene predicted gene 12693
Mysm1 4 94942040 to 94979100 37060 - protein coding gene myb-like, SWIRM and MPN domains 1
Tssr42452 4 94945964 to 94945972 8 - TSS region transcription start site region 42452
Cpgi14454 4 94978654 to 94979444 790 CpG island CpG island 14454
Tssr42453 4 94979063 to 94979106 43 - TSS region transcription start site region 42453
Gm12694 4 94979301 to 95018964 39663 + antisense lncRNA gene predicted gene 12694
Gm12703 4 95029963 to 95048370 18407 - unclassified non-coding RNA gene predicted gene 12703
Gm12704 4 95039162 to 95039625 463 - pseudogene predicted gene 12704
Jun 4 95049036 to 95052222 3186 - protein coding gene jun proto-oncogene
Tssr42454 4 95049805 to 95049810 5 - TSS region transcription start site region 42454
Tssr42455 4 95049826 to 95049841 15 - TSS region transcription start site region 42455
Cpgi14455 4 95049906 to 95053388 3482 CpG island CpG island 14455
Tssr42456 4 95050429 to 95050445 16 - TSS region transcription start site region 42456
Tssr42457 4 95051174 to 95051210 36 - TSS region transcription start site region 42457
Tssr42458 4 95051261 to 95051312 51 - TSS region transcription start site region 42458
Junos 4 95051534 to 95167318 115784 + antisense lncRNA gene jun proto-oncogene, opposite strand
Tssr42459 4 95052170 to 95052181 11 - TSS region transcription start site region 42459
Tssr42460 4 95052188 to 95052207 19 - TSS region transcription start site region 42460
Tssr37812 4 95052560 to 95052573 13 + TSS region transcription start site region 37812
Tssr37813 4 95052857 to 95052873 16 + TSS region transcription start site region 37813
Tssr37814 4 95054091 to 95054092 1 + TSS region transcription start site region 37814
Tssr37815 4 95054677 to 95054681 4 + TSS region transcription start site region 37815
n-R5s189 4 95062650 to 95062763 113 + rRNA gene nuclear encoded rRNA 5S 189
D4Mit9 4 95069342 to 95069538 196 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 9
Sle2 4 95069342 to 95069538 196 QTL systemic lupus erythmatosus susceptibility 2
Tssr37816 4 95075752 to 95075791 39 + TSS region transcription start site region 37816
Cpgi14456 4 95075812 to 95076006 194 CpG island CpG island 14456
4930551L18Rik 4 95089083 to 95091419 2336 - lincRNA gene RIKEN cDNA 4930551L18 gene
Tssr37817 4 95093525 to 95093536 11 + TSS region transcription start site region 37817
Tssr37818 4 95104343 to 95104345 2 + TSS region transcription start site region 37818
Gm28096 4 95151740 to 95157503 5763 + sense intronic lncRNA gene predicted gene 28096
Cpgi14457 4 95160939 to 95161817 878 CpG island CpG island 14457
Tssr37819 4 95161463 to 95161490 27 + TSS region transcription start site region 37819
Tssr37820 4 95161513 to 95161522 9 + TSS region transcription start site region 37820
Tssr1233 4 95193292 to 95193326 34 + TSS region transcription start site region 1233
Gm12708 4 95193313 to 95209727 16414 + lincRNA gene predicted gene 12708
Gm32240 4 95196913 to 95208085 11172 - lncRNA gene predicted gene, 32240
Tssr42461 4 95215161 to 95215196 35 - TSS region transcription start site region 42461
Tssr37821 4 95215363 to 95215368 5 + TSS region transcription start site region 37821
Tssr37822 4 95215432 to 95215446 14 + TSS region transcription start site region 37822
Tssr37823 4 95215468 to 95215475 7 + TSS region transcription start site region 37823
Gm46863 4 95254826 to 95259161 4335 + pseudogene predicted gene, 46863
D4Mit358 4 95336187 to 95336348 161 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-358
Gm29064 4 95401978 to 95402790 812 - lincRNA gene predicted gene 29064
Gm830 4 95466913 to 95487394 20481 - unclassified non-coding RNA gene predicted gene 830
Gm12707 4 95486896 to 95487630 734 + lncRNA gene predicted gene 12707
Tssr42462 4 95487381 to 95487398 17 - TSS region transcription start site region 42462
Tssr42463 4 95487413 to 95487454 41 - TSS region transcription start site region 42463
Tssr1234 4 95505129 to 95505131 2 + TSS region transcription start site region 1234
Gm25004 4 95524044 to 95524204 160 + snRNA gene predicted gene, 25004
Gm40206 4 95553418 to 95557366 3948 - lncRNA gene predicted gene, 40206
Tssr37824 4 95557494 to 95557544 50 + TSS region transcription start site region 37824
Fggy 4 95557507 to 95926939 369432 + protein coding gene FGGY carbohydrate kinase domain containing
Gm20651 4 95561831 to 95562159 328 - pseudogene predicted gene 20651
Tssr37825 4 95579417 to 95579428 11 + TSS region transcription start site region 37825
Tssr37826 4 95579446 to 95579462 16 + TSS region transcription start site region 37826
Tssr37827 4 95579463 to 95579499 36 + TSS region transcription start site region 37827
4930509A12Rik 4 95634742 to 95635230 488 unclassified gene RIKEN cDNA 4930509A12 gene
Tssr37828 4 95637414 to 95637418 4 + TSS region transcription start site region 37828
Tssr37829 4 95681641 to 95681649 8 + TSS region transcription start site region 37829
Tssr37830 4 95738372 to 95738400 28 + TSS region transcription start site region 37830
Tssr37831 4 95738409 to 95738424 15 + TSS region transcription start site region 37831
Tssr42464 4 95741236 to 95741240 4 - TSS region transcription start site region 42464
Tssr37832 4 95850760 to 95850765 5 + TSS region transcription start site region 37832
Tssr1235 4 95934126 to 95934133 7 - TSS region transcription start site region 1235
Tssr37833 4 95947146 to 95947155 9 + TSS region transcription start site region 37833
9530080O11Rik 4 95959715 to 95967655 7940 - lncRNA gene RIKEN cDNA 9530080O11 gene
Cpgi14458 4 95966843 to 95967931 1088 CpG island CpG island 14458
Tssr42465 4 95967005 to 95967017 12 - TSS region transcription start site region 42465
Tssr37834 4 95967117 to 95967145 28 + TSS region transcription start site region 37834
Tssr37835 4 95967205 to 95967320 115 + TSS region transcription start site region 37835
Hook1 4 95967240 to 96025413 58173 + protein coding gene hook microtubule tethering protein 1
Tssr37836 4 95967322 to 95967381 59 + TSS region transcription start site region 37836
Tssr37837 4 95967384 to 95967403 19 + TSS region transcription start site region 37837
Tssr37838 4 95967405 to 95967426 21 + TSS region transcription start site region 37838
Tssr37839 4 95969919 to 95969928 9 + TSS region transcription start site region 37839
Tssr37840 4 95969950 to 95969959 9 + TSS region transcription start site region 37840
2900072D07Rik 4 96029758 to 96030748 990 unclassified gene RIKEN cDNA 2900072D07 gene
Cyp2j13 4 96042660 to 96077566 34906 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 13
Hspe1-ps6 4 96072424 to 96072706 282 - pseudogene heat shock protein 1 (chaperonin 10), pseudogene 6
Tssr42466 4 96077509 to 96077547 38 - TSS region transcription start site region 42466
Cyp2j12 4 96099318 to 96141152 41834 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 12
Tssr42467 4 96141149 to 96141158 9 - TSS region transcription start site region 42467
Cyp2j7-ps3 4 96151653 to 96151858 205 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 3
Cyp2j7-ps2 4 96170207 to 96170385 178 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 2
Cyp2j7-ps1 4 96190071 to 96190243 172 - pseudogene cytochrome P450, family 2, subfamily j, polypeptide 7, pseudogene 1
Cyp2j7 4 96195197 to 96236659 41462 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 7
Tssr1236 4 96244897 to 96244898 1 + TSS region transcription start site region 1236
Cyp2j15-ps 4 96245560 to 96274270 28710 - pseudogene cytochrome P450, family 2, subfamily j, member 15, pseudogene
Cyp2j11 4 96294508 to 96348662 54154 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 11
Tssr42468 4 96348573 to 96348583 10 - TSS region transcription start site region 42468
Tssr42469 4 96348599 to 96348618 19 - TSS region transcription start site region 42469
Tssr42470 4 96348625 to 96348636 11 - TSS region transcription start site region 42470
Tssr42471 4 96348650 to 96348677 27 - TSS region transcription start site region 42471
Cyp2j14-ps 4 96356311 to 96380211 23900 - pseudogene cytochrome P450, family 2, subfamily j, member 14, pseudogene
Cyp2j8 4 96444596 to 96507386 62790 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 8
D4Mit153 4 96477514 to 96477630 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 153
Ltpr4 4 96477514 to 96477630 116 QTL Leishmania tropica response 4
Ltpr4a 4 96477514 to 96477630 116 QTL Leishmania tropica response 4a
Ltpr4b 4 96477514 to 96477630 116 QTL Leishmania tropica response 4b
Ltpr4c 4 96477514 to 96477630 116 QTL Leishmania tropica response 4c
Tssr42472 4 96507328 to 96507348 20 - TSS region transcription start site region 42472
Tssr42473 4 96507396 to 96507399 3 - TSS region transcription start site region 42473
Tssr42474 4 96507445 to 96507452 7 - TSS region transcription start site region 42474
Tssr42475 4 96507477 to 96507486 9 - TSS region transcription start site region 42475
Cyp2j6 4 96516138 to 96553661 37523 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 6
Tssr42476 4 96547804 to 96547809 5 - TSS region transcription start site region 42476
Tssr42477 4 96553470 to 96553549 79 - TSS region transcription start site region 42477
Tssr42478 4 96553551 to 96553562 11 - TSS region transcription start site region 42478
Tssr42479 4 96553565 to 96553576 11 - TSS region transcription start site region 42479
Tssr42480 4 96553589 to 96553596 7 - TSS region transcription start site region 42480
Tssr42481 4 96553617 to 96553664 47 - TSS region transcription start site region 42481
Cyp2j9 4 96568429 to 96591578 23149 - protein coding gene cytochrome P450, family 2, subfamily j, polypeptide 9
Tssr42482 4 96591368 to 96591395 27 - TSS region transcription start site region 42482
Tssr42483 4 96591405 to 96591454 49 - TSS region transcription start site region 42483
Tssr42484 4 96591475 to 96591505 30 - TSS region transcription start site region 42484
Tssr42485 4 96591555 to 96591594 39 - TSS region transcription start site region 42485
Sbw2 4 128115487 to 95069342 -33046145 QTL splenomegaly-NZB x NZW 2
Sles2 4 150592401 to 95069342 -55523059 QTL systemic lupus erythmatosus suppressor 2