Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:94406261-95696312

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlsr1 4 88682921 to 95069538 6386617 QTL thymic lymphoma suppressor region 1
Gm12648 4 94089576 to 94425588 336012 - lincRNA gene predicted gene 12648
Cpgi14450 4 94428880 to 94429177 297 CpG island CpG island 14450
Gm26410 4 94434224 to 94434484 260 - unclassified non-coding RNA gene predicted gene, 26410
Gm12655 4 94460931 to 94477180 16249 - unclassified non-coding RNA gene predicted gene 12655
Tssr42439 4 94477167 to 94477207 40 - TSS region transcription start site region 42439
Gm22804 4 94487883 to 94487983 100 + snoRNA gene predicted gene, 22804
D4Mit350 4 94495101 to 94495222 121 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 350
Gm12656 4 94496989 to 94497556 567 + pseudogene predicted gene 12656
Caap1 4 94500081 to 94556796 56715 - protein coding gene caspase activity and apoptosis inhibitor 1
Tssr42440 4 94533305 to 94533310 5 - TSS region transcription start site region 42440
Tssr42441 4 94555080 to 94555086 6 - TSS region transcription start site region 42441
Cpgi14451 4 94556183 to 94556969 786 CpG island CpG island 14451
Gm10306 4 94556546 to 94557078 532 + protein coding gene predicted gene 10306
Tssr42442 4 94556737 to 94556802 65 - TSS region transcription start site region 42442
Plaa 4 94567514 to 94603244 35730 - protein coding gene phospholipase A2, activating protein
Tssr42443 4 94569285 to 94569304 19 - TSS region transcription start site region 42443
Tssr42444 4 94587345 to 94587361 16 - TSS region transcription start site region 42444
Gm12657 4 94599385 to 94599795 410 + pseudogene predicted gene 12657
Cpgi14452 4 94602590 to 94603612 1022 CpG island CpG island 14452
Tssr42445 4 94603095 to 94603193 98 - TSS region transcription start site region 42445
Tssr42446 4 94603203 to 94603228 25 - TSS region transcription start site region 42446
Tssr42447 4 94603239 to 94603253 14 - TSS region transcription start site region 42447
Tssr37794 4 94603261 to 94603281 20 + TSS region transcription start site region 37794
Tssr37795 4 94603521 to 94603538 17 + TSS region transcription start site region 37795
Cpgi14453 4 94614322 to 94614924 602 CpG island CpG island 14453
Tssr37796 4 94614483 to 94614500 17 + TSS region transcription start site region 37796
Ift74 4 94614491 to 94693229 78738 + protein coding gene intraflagellar transport 74
Tssr37797 4 94614514 to 94614570 56 + TSS region transcription start site region 37797
Tssr37798 4 94614589 to 94614598 9 + TSS region transcription start site region 37798
Tssr37799 4 94624726 to 94624744 18 + TSS region transcription start site region 37799
Tssr37800 4 94627250 to 94627260 10 + TSS region transcription start site region 37800
Lrrc19 4 94636653 to 94650144 13491 - protein coding gene leucine rich repeat containing 19
Tssr37801 4 94642417 to 94642421 4 + TSS region transcription start site region 37801
Tssr42448 4 94650092 to 94650127 35 - TSS region transcription start site region 42448
Tssr42449 4 94650134 to 94650149 15 - TSS region transcription start site region 42449
Mir872 4 94665157 to 94665237 80 + miRNA gene microRNA 872
Gm40205 4 94721603 to 94732564 10961 + lncRNA gene predicted gene, 40205
Tssr37802 4 94735211 to 94735224 13 + TSS region transcription start site region 37802
Tssr37803 4 94739276 to 94739298 22 + TSS region transcription start site region 37803
Tek 4 94739289 to 94874976 135687 + protein coding gene TEK receptor tyrosine kinase
Tssr37804 4 94739448 to 94739455 7 + TSS region transcription start site region 37804
Tssr37805 4 94739462 to 94739484 22 + TSS region transcription start site region 37805
Tssr37806 4 94739493 to 94739513 20 + TSS region transcription start site region 37806
Tssr37807 4 94739522 to 94739537 15 + TSS region transcription start site region 37807
Tssr37808 4 94739565 to 94739587 22 + TSS region transcription start site region 37808
Tssr1232 4 94740018 to 94740021 3 + TSS region transcription start site region 1232
Tssr37809 4 94751583 to 94751586 3 + TSS region transcription start site region 37809
Tssr37810 4 94820769 to 94820785 16 + TSS region transcription start site region 37810
Tssr37811 4 94845748 to 94845752 4 + TSS region transcription start site region 37811
Eqtn 4 94907267 to 94928843 21576 - protein coding gene equatorin, sperm acrosome associated
Tssr42450 4 94928789 to 94928815 26 - TSS region transcription start site region 42450
Tssr42451 4 94928820 to 94928848 28 - TSS region transcription start site region 42451
Gm12693 4 94935621 to 94936103 482 + pseudogene predicted gene 12693
Mysm1 4 94942040 to 94979100 37060 - protein coding gene myb-like, SWIRM and MPN domains 1
Tssr42452 4 94945964 to 94945972 8 - TSS region transcription start site region 42452
Cpgi14454 4 94978654 to 94979444 790 CpG island CpG island 14454
Tssr42453 4 94979063 to 94979106 43 - TSS region transcription start site region 42453
Gm12694 4 94979301 to 95018964 39663 + antisense lncRNA gene predicted gene 12694
Gm12703 4 95029963 to 95048370 18407 - unclassified non-coding RNA gene predicted gene 12703
Gm12704 4 95039162 to 95039625 463 - pseudogene predicted gene 12704
Jun 4 95049036 to 95052222 3186 - protein coding gene jun proto-oncogene
Tssr42454 4 95049805 to 95049810 5 - TSS region transcription start site region 42454
Tssr42455 4 95049826 to 95049841 15 - TSS region transcription start site region 42455
Cpgi14455 4 95049906 to 95053388 3482 CpG island CpG island 14455
Tssr42456 4 95050429 to 95050445 16 - TSS region transcription start site region 42456
Tssr42457 4 95051174 to 95051210 36 - TSS region transcription start site region 42457
Tssr42458 4 95051261 to 95051312 51 - TSS region transcription start site region 42458
Junos 4 95051534 to 95167318 115784 + antisense lncRNA gene jun proto-oncogene, opposite strand
Tssr42459 4 95052170 to 95052181 11 - TSS region transcription start site region 42459
Tssr42460 4 95052188 to 95052207 19 - TSS region transcription start site region 42460
Tssr37812 4 95052560 to 95052573 13 + TSS region transcription start site region 37812
Tssr37813 4 95052857 to 95052873 16 + TSS region transcription start site region 37813
Tssr37814 4 95054091 to 95054092 1 + TSS region transcription start site region 37814
Tssr37815 4 95054677 to 95054681 4 + TSS region transcription start site region 37815
n-R5s189 4 95062650 to 95062763 113 + rRNA gene nuclear encoded rRNA 5S 189
D4Mit9 4 95069342 to 95069538 196 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 9
Sle2 4 95069342 to 95069538 196 QTL systemic lupus erythmatosus susceptibility 2
Tssr37816 4 95075752 to 95075791 39 + TSS region transcription start site region 37816
Cpgi14456 4 95075812 to 95076006 194 CpG island CpG island 14456
4930551L18Rik 4 95089083 to 95091419 2336 - lincRNA gene RIKEN cDNA 4930551L18 gene
Tssr37817 4 95093525 to 95093536 11 + TSS region transcription start site region 37817
Tssr37818 4 95104343 to 95104345 2 + TSS region transcription start site region 37818
Gm28096 4 95151740 to 95157503 5763 + sense intronic lncRNA gene predicted gene 28096
Cpgi14457 4 95160939 to 95161817 878 CpG island CpG island 14457
Tssr37819 4 95161463 to 95161490 27 + TSS region transcription start site region 37819
Tssr37820 4 95161513 to 95161522 9 + TSS region transcription start site region 37820
Tssr1233 4 95193292 to 95193326 34 + TSS region transcription start site region 1233
Gm12708 4 95193313 to 95209727 16414 + lincRNA gene predicted gene 12708
Gm32240 4 95196913 to 95208085 11172 - lncRNA gene predicted gene, 32240
Tssr42461 4 95215161 to 95215196 35 - TSS region transcription start site region 42461
Tssr37821 4 95215363 to 95215368 5 + TSS region transcription start site region 37821
Tssr37822 4 95215432 to 95215446 14 + TSS region transcription start site region 37822
Tssr37823 4 95215468 to 95215475 7 + TSS region transcription start site region 37823
Gm46863 4 95254826 to 95259161 4335 + pseudogene predicted gene, 46863
D4Mit358 4 95336187 to 95336348 161 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-358
Gm29064 4 95401978 to 95402790 812 - lincRNA gene predicted gene 29064
Gm830 4 95466913 to 95487394 20481 - unclassified non-coding RNA gene predicted gene 830
Gm12707 4 95486896 to 95487630 734 + lncRNA gene predicted gene 12707
Tssr42462 4 95487381 to 95487398 17 - TSS region transcription start site region 42462
Tssr42463 4 95487413 to 95487454 41 - TSS region transcription start site region 42463
Tssr1234 4 95505129 to 95505131 2 + TSS region transcription start site region 1234
Gm25004 4 95524044 to 95524204 160 + snRNA gene predicted gene, 25004
Gm40206 4 95553418 to 95557366 3948 - lncRNA gene predicted gene, 40206
Tssr37824 4 95557494 to 95557544 50 + TSS region transcription start site region 37824
Fggy 4 95557507 to 95926939 369432 + protein coding gene FGGY carbohydrate kinase domain containing
Gm20651 4 95561831 to 95562159 328 - pseudogene predicted gene 20651
Tssr37825 4 95579417 to 95579428 11 + TSS region transcription start site region 37825
Tssr37826 4 95579446 to 95579462 16 + TSS region transcription start site region 37826
Tssr37827 4 95579463 to 95579499 36 + TSS region transcription start site region 37827
4930509A12Rik 4 95634742 to 95635230 488 unclassified gene RIKEN cDNA 4930509A12 gene
Tssr37828 4 95637414 to 95637418 4 + TSS region transcription start site region 37828
Tssr37829 4 95681641 to 95681649 8 + TSS region transcription start site region 37829
Sbw2 4 128115487 to 95069342 -33046145 QTL splenomegaly-NZB x NZW 2
Sles2 4 150592401 to 95069342 -55523059 QTL systemic lupus erythmatosus suppressor 2