Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:90881589-92375139

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stmm3 4 63365294 to 91117397 27752103 QTL skin tumor modifier of MSM 3
Gm25244 4 90997862 to 90997993 131 - snoRNA gene predicted gene, 25244
Gm12643 4 91037884 to 91038199 315 + pseudogene predicted gene 12643
D4Mit165 4 91117256 to 91117397 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 165
D4Mit186 4 91145650 to 91145792 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 186
Bulb1 4 91145650 to 91145792 142 QTL bulb size 1
Gm12644 4 91156682 to 91157287 605 + pseudogene predicted gene 12644
A730080H06Rik 4 91211532 to 91246042 34510 - lncRNA gene RIKEN cDNA A730080H06 gene
Elavl2 4 91250766 to 91400059 149293 - protein coding gene ELAV like RNA binding protein 1
Tssr42415 4 91363878 to 91363882 4 - TSS region transcription start site region 42415
Gm12653 4 91365379 to 91365939 560 + pseudogene predicted gene 12653
Cpgi14444 4 91370907 to 91372606 1699 CpG island CpG island 14444
Tssr42416 4 91371946 to 91371972 26 - TSS region transcription start site region 42416
Tssr42417 4 91371984 to 91372000 16 - TSS region transcription start site region 42417
Tssr42418 4 91372028 to 91372047 19 - TSS region transcription start site region 42418
Cpgi14445 4 91372895 to 91373081 186 CpG island CpG island 14445
Mir6402 4 91373284 to 91373363 79 - miRNA gene microRNA 6402
Cpgi14446 4 91374350 to 91375188 838 CpG island CpG island 14446
Cpgi14447 4 91376305 to 91376694 389 CpG island CpG island 14447
Tssr42419 4 91376315 to 91376330 15 - TSS region transcription start site region 42419
Tssr42420 4 91376331 to 91376355 24 - TSS region transcription start site region 42420
Tssr42421 4 91376362 to 91376377 15 - TSS region transcription start site region 42421
Tssr42422 4 91376433 to 91376477 44 - TSS region transcription start site region 42422
Tssr42423 4 91376490 to 91376502 12 - TSS region transcription start site region 42423
Tssr42424 4 91399996 to 91400007 11 - TSS region transcription start site region 42424
Cpgi14448 4 91400484 to 91400877 393 CpG island CpG island 14448
D4Mit329 4 91454783 to 91454893 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 329
Gm40202 4 91496622 to 91536487 39865 + lncRNA gene predicted gene, 40202
D4Mit15 4 91556462 to 91556746 284 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 15
Plep 4 91556462 to 91556746 284 QTL plasma lepin levels
Sluc43a 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43a
Sluc43c 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43c
Sluc43d 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43d
Sluc43e 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43e
Sluc43f 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43f
Sluc43g 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43g
Sluc43h 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43h
Sluc43i 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43i
Sluc43b 4 91556462 to 91556746 284 QTL susceptibility to lung cancer 43b
Gm12668 4 91626589 to 91630139 3550 + lincRNA gene predicted gene 12668
Gm12670 4 91646315 to 91651152 4837 + lincRNA gene predicted gene 12670
Gm12667 4 91708638 to 91709969 1331 + pseudogene predicted gene 12667
Gm12669 4 91805550 to 91806555 1005 - pseudogene predicted gene 12669
Gm12671 4 91851668 to 91852669 1001 - pseudogene predicted gene 12671
4930577H14Rik 4 91938854 to 91939952 1098 - lincRNA gene RIKEN cDNA 4930577H14 gene
Tssr42425 4 91939947 to 91939957 10 - TSS region transcription start site region 42425
Tssr37791 4 91940014 to 91940030 16 + TSS region transcription start site region 37791
Izumo3 4 92144318 to 92147221 2903 - protein coding gene IZUMO family member 3
Tssr42426 4 92147185 to 92147227 42 - TSS region transcription start site region 42426
Gm40203 4 92147281 to 92150948 3667 + lncRNA gene predicted gene, 40203
Tssr37792 4 92147300 to 92147306 6 + TSS region transcription start site region 37792
Gm12666 4 92190685 to 92191336 651 - protein coding gene predicted gene 12666
Gm40204 4 92241764 to 92266240 24476 + lncRNA gene predicted gene, 40204
Tssr42427 4 92339842 to 92339848 6 - TSS region transcription start site region 42427
Gm12638 4 92373051 to 92373348 297 - pseudogene predicted gene 12638
Wght7 4 148000000 to 91000000 -57000000 QTL weight 7