Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:89592874-91313625

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stmm3 4 63365294 to 91117397 27752103 QTL skin tumor modifier of MSM 3
Cpgi14443 4 89687908 to 89689195 1287 CpG island CpG island 14443
Tssr37786 4 89688038 to 89688085 47 + TSS region transcription start site region 37786
Tssr37787 4 89688094 to 89688110 16 + TSS region transcription start site region 37787
Tssr37788 4 89688172 to 89688180 8 + TSS region transcription start site region 37788
Tssr37789 4 89688196 to 89688197 1 + TSS region transcription start site region 37789
Dmrta1 4 89688198 to 89694766 6568 + protein coding gene doublesex and mab-3 related transcription factor like family A1
Tssr37790 4 89818701 to 89818703 2 + TSS region transcription start site region 37790
Tssr42414 4 89859313 to 89859316 3 - TSS region transcription start site region 42414
Gm12629 4 90185527 to 90190009 4482 + lincRNA gene predicted gene 12629
Zfp352 4 90218820 to 90225687 6867 + protein coding gene zinc finger protein 352
Gm12633 4 90359625 to 90361314 1689 - pseudogene predicted gene 12633
Gm12634 4 90368731 to 90369722 991 + pseudogene predicted gene 12634
Gm12635 4 90452874 to 90453625 751 + pseudogene predicted gene 12635
Gm12636 4 90543747 to 90544370 623 - pseudogene predicted gene 12636
Gm12632 4 90856883 to 90857377 494 + pseudogene predicted gene 12632
Gm25244 4 90997862 to 90997993 131 - snoRNA gene predicted gene, 25244
Gm12643 4 91037884 to 91038199 315 + pseudogene predicted gene 12643
D4Mit165 4 91117256 to 91117397 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 165
D4Mit186 4 91145650 to 91145792 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 186
Bulb1 4 91145650 to 91145792 142 QTL bulb size 1
Gm12644 4 91156682 to 91157287 605 + pseudogene predicted gene 12644
A730080H06Rik 4 91211532 to 91246042 34510 - lncRNA gene RIKEN cDNA A730080H06 gene
Elavl2 4 91250766 to 91400059 149293 - protein coding gene ELAV like RNA binding protein 1
Epid1 4 100000000 to 90000000 -10000000 QTL epididymis and vas deferens weight 1
Svwq1 4 119000000 to 90000000 -29000000 QTL seminal vesicle weight QTL 1
Wght7 4 148000000 to 91000000 -57000000 QTL weight 7