Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:88822037-89062053

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Ifna6 4 88827416 to 88827985 569 + protein coding gene interferon alpha 6
Ifna5 4 88835525 to 88836094 569 + protein coding gene interferon alpha 5
Ifna4 4 88841861 to 88842421 560 + protein coding gene interferon alpha 4
Ifna1 4 88850087 to 88850656 569 + protein coding gene interferon alpha 1
Ifna 4 88850617 to 88850951 334 complex/cluster/region interferon alpha
4930553M12Rik 4 88867233 to 88868380 1147 - lincRNA gene RIKEN cDNA 4930553M12 gene
Cpgi14432 4 88868074 to 88868450 376 CpG island CpG island 14432
Tssr37771 4 88868474 to 88868500 26 + TSS region transcription start site region 37771
Gm34457 4 88871741 to 88874895 3154 + lncRNA gene predicted gene, 34457
Ifne 4 88879538 to 88880201 663 - protein coding gene interferon epsilon
Tssr42393 4 88880206 to 88880228 22 - TSS region transcription start site region 42393
Gm49890 4 88909855 to 88938521 28666 - lincRNA gene predicted gene, 49890
Mir31 4 88910557 to 88910662 105 - miRNA gene microRNA 31
Tssr42394 4 88910569 to 88910573 4 - TSS region transcription start site region 42394
Tssr42395 4 88917244 to 88917254 10 - TSS region transcription start site region 42395
Tssr42396 4 88917281 to 88917288 7 - TSS region transcription start site region 42396
Cpgi14433 4 88937811 to 88938913 1102 CpG island CpG island 14433
Tssr42397 4 88938423 to 88938433 10 - TSS region transcription start site region 42397
Tssr42398 4 88938435 to 88938479 44 - TSS region transcription start site region 42398
Tssr42399 4 88938877 to 88938888 11 - TSS region transcription start site region 42399
Tssr42400 4 88942037 to 88942053 16 - TSS region transcription start site region 42400
Gm34568 4 88956416 to 89031301 74885 + lncRNA gene predicted gene, 34568
Tssr42401 4 88982591 to 88982624 33 - TSS region transcription start site region 42401
Gm49891 4 88995118 to 89039192 44074 - lincRNA gene predicted gene, 49891
Tssr37772 4 89050240 to 89050248 8 + TSS region transcription start site region 37772
Tssr37773 4 89050273 to 89050280 7 + TSS region transcription start site region 37773
Tssr37774 4 89050296 to 89050324 28 + TSS region transcription start site region 37774
Wincr1 4 89050307 to 89084610 34303 + lincRNA gene WNT induced non-coding RNA 1