Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:8844349-10844368

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Whl 4 8426721 to 9574055 1147334 heritable phenotypic marker wheels
Chd7 4 8690406 to 8867659 177253 + protein coding gene chromodomain helicase DNA binding protein 7
Tssr36447 4 8854198 to 8854204 6 + TSS region transcription start site region 36447
Cpgi14010 4 8865760 to 8866532 772 CpG island CpG island 14010
Gm46842 4 8901941 to 8910658 8717 - lncRNA gene predicted gene, 46842
D4Mit360 4 8905620 to 8905732 112 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-360
Cpgi14011 4 8911114 to 8911939 825 CpG island CpG island 14011
Tssr40892 4 8912860 to 8912892 32 - TSS region transcription start site region 40892
Tssr36448 4 8913007 to 8913018 11 + TSS region transcription start site region 36448
Tssr36449 4 8913019 to 8913029 10 + TSS region transcription start site region 36449
Tssr40893 4 8913686 to 8913689 3 - TSS region transcription start site region 40893
Tssr36450 4 8913812 to 8913846 34 + TSS region transcription start site region 36450
Tssr36451 4 8915755 to 8915791 36 + TSS region transcription start site region 36451
Cpgi14012 4 8922079 to 8922361 282 CpG island CpG island 14012
Tssr40894 4 8926733 to 8926758 25 - TSS region transcription start site region 40894
Tssr1118 4 8939228 to 8939239 11 + TSS region transcription start site region 1118
Tssr36452 4 8939749 to 8939768 19 + TSS region transcription start site region 36452
Rps18-ps2 4 8941259 to 8941656 397 + pseudogene ribosomal protein S18, pseudogene 2
Tssr40895 4 8980268 to 8980270 2 - TSS region transcription start site region 40895
Gm34428 4 9006056 to 9008559 2503 - lncRNA gene predicted gene, 34428
Cpgi14013 4 9027839 to 9028341 502 CpG island CpG island 14013
Gm34288 4 9128924 to 9142887 13963 - lncRNA gene predicted gene, 34288
Cpgi14014 4 9135901 to 9136073 172 CpG island CpG island 14014
Gm23423 4 9210003 to 9210108 105 + snRNA gene predicted gene, 23423
Gm26548 4 9267323 to 9269915 2592 - lincRNA gene predicted gene, 26548
Tssr36453 4 9269285 to 9269335 50 + TSS region transcription start site region 36453
Clvs1 4 9269293 to 9451691 182398 + protein coding gene clavesin 1
Cpgi14015 4 9269309 to 9269814 505 CpG island CpG island 14015
Tssr36454 4 9269338 to 9269362 24 + TSS region transcription start site region 36454
Gm11816 4 9283972 to 9287391 3419 - antisense lncRNA gene predicted gene 11816
Tssr40896 4 9287317 to 9287350 33 - TSS region transcription start site region 40896
D4Mit317 4 9327517 to 9327609 92 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 317
Cpgi14016 4 9337605 to 9337813 208 CpG island CpG island 14016
D130060J02Rik 4 9395378 to 9400974 5596 unclassified non-coding RNA gene RIKEN cDNA D130060J02 gene
D4Mit264 4 9395525 to 9395649 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 264
Bbaa13 4 9395525 to 9395649 124 QTL B.burgdorferi-associated arthritis 13
Ksc2 4 9395525 to 9574055 178530 QTL keratinocyte stem cell locus 2
Gm11817 4 9431961 to 9447199 15238 - antisense lncRNA gene predicted gene 11817
Asph 4 9449085 to 9669344 220259 - protein coding gene aspartate-beta-hydroxylase
Tssr40897 4 9451152 to 9451158 6 - TSS region transcription start site region 40897
Cpgi14017 4 9502619 to 9502861 242 CpG island CpG island 14017
Tssr40898 4 9526214 to 9526223 9 - TSS region transcription start site region 40898
D4Mit263 4 9569846 to 9569955 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 263
Gm19130 4 9569963 to 9570493 530 - pseudogene predicted gene, 19130
D4Mit181 4 9573923 to 9574055 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 181
Tssr40899 4 9602044 to 9602080 36 - TSS region transcription start site region 40899
Tssr40900 4 9613890 to 9613924 34 - TSS region transcription start site region 40900
Tssr40901 4 9643622 to 9643633 11 - TSS region transcription start site region 40901
Tssr40902 4 9643638 to 9643714 76 - TSS region transcription start site region 40902
Tssr40903 4 9651333 to 9651336 3 - TSS region transcription start site region 40903
Tssr40904 4 9652565 to 9652569 4 - TSS region transcription start site region 40904
Tssr40905 4 9661094 to 9661105 11 - TSS region transcription start site region 40905
Cpgi14018 4 9668408 to 9669499 1091 CpG island CpG island 14018
Tssr40906 4 9669068 to 9669113 45 - TSS region transcription start site region 40906
Gm25677 4 9669279 to 9669350 71 + miRNA gene predicted gene, 25677
Gm24152 4 9695645 to 9695807 162 - snRNA gene predicted gene, 24152
D4Mit101 4 9702613 to 9702715 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 101
Gm34947 4 9748386 to 9751427 3041 + lncRNA gene predicted gene, 34947
Cpgi14019 4 9770493 to 9771078 585 CpG island CpG island 14019
4930412C18Rik 4 9770585 to 9823411 52826 + lncRNA gene RIKEN cDNA 4930412C18 gene
Tssr36455 4 9770625 to 9770689 64 + TSS region transcription start site region 36455
Cpgi14020 4 9775018 to 9775213 195 CpG island CpG island 14020
Cpgi14021 4 9825824 to 9826009 185 CpG island CpG island 14021
Gm42254 4 9830338 to 9840397 10059 - lncRNA gene predicted gene, 42254
Cpgi14022 4 9843161 to 9843366 205 CpG island CpG island 14022
Cpgi14023 4 9843606 to 9844896 1290 CpG island CpG island 14023
Tssr36456 4 9844349 to 9844368 19 + TSS region transcription start site region 36456
Gdf6 4 9844372 to 9862345 17973 + protein coding gene growth differentiation factor 6
Cpgi14024 4 9846770 to 9847651 881 CpG island CpG island 14024
Cpgi14025 4 9859143 to 9860434 1291 CpG island CpG island 14025
Cpgi14026 4 9874627 to 9874969 342 CpG island CpG island 14026
4930448K20Rik 4 9915965 to 9917397 1432 - pseudogene RIKEN cDNA 4930448K20 gene
Tssr40907 4 9917377 to 9917400 23 - TSS region transcription start site region 40907
Tssr36457 4 9952979 to 9952981 2 + TSS region transcription start site region 36457
Gm11834 4 9958208 to 9959130 922 + pseudogene predicted gene 11834
Gm11835 4 9959354 to 9960016 662 + pseudogene predicted gene 11835
D4Mit227 4 10000496 to 10000676 180 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 227
Gm35008 4 10147612 to 10158241 10629 + lncRNA gene predicted gene, 35008
Gm46879 4 10392712 to 10409934 17222 - lncRNA gene predicted gene, 46879
Gm11814 4 10438815 to 10439743 928 - pseudogene predicted gene 11814
Gm11815 4 10487956 to 10489362 1406 - lincRNA gene predicted gene 11815
1700123O12Rik 4 10508031 to 10797802 289771 - lincRNA gene RIKEN cDNA 1700123O12 gene
Gm11813 4 10580812 to 10581102 290 + pseudogene predicted gene 11813
Tssr40908 4 10797792 to 10797802 10 - TSS region transcription start site region 40908
Tssr40909 4 10797807 to 10797814 7 - TSS region transcription start site region 40909
Gm12920 4 10813543 to 10814728 1185 + pseudogene predicted gene 12920
Sicd3 4 43760862 to 9395525 -34365337 QTL seizure-induced cell death 3