Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:88390557-89430662

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W6q15 4 17892616 to 89063979 71171363 QTL weight 6 weeks QTL 15
Lvrq9 4 17892616 to 89063979 71171363 QTL liver weight QTL 9
Kidq4 4 17892616 to 89063979 71171363 QTL kidney weight QTL 4
Spir2 4 50682795 to 88592400 37909605 QTL Streptococcus pneumoniae infection resistance 2
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Focad 4 88094630 to 88411011 316381 + protein coding gene focadhesin
Hacd4 4 88407687 to 88438936 31249 - protein coding gene 3-hydroxyacyl-CoA dehydratase 4
Tssr42379 4 88416087 to 88416100 13 - TSS region transcription start site region 42379
Tssr42380 4 88418264 to 88418281 17 - TSS region transcription start site region 42380
Tssr42381 4 88419000 to 88419013 13 - TSS region transcription start site region 42381
Tssr42382 4 88428081 to 88428085 4 - TSS region transcription start site region 42382
Tssr42383 4 88429001 to 88429007 6 - TSS region transcription start site region 42383
Gdap6 4 88431729 to 88432926 1197 unclassified gene ganglioside-induced differentiation-associated-protein 6
Tssr42384 4 88438127 to 88438131 4 - TSS region transcription start site region 42384
Tssr42385 4 88438885 to 88438894 9 - TSS region transcription start site region 42385
Tssr42386 4 88438900 to 88438933 33 - TSS region transcription start site region 42386
Ifnb1 4 88522025 to 88522774 749 - protein coding gene interferon beta 1, fibroblast
Tssr42387 4 88522842 to 88522847 5 - TSS region transcription start site region 42387
Ifna15 4 88557673 to 88558245 572 - protein coding gene interferon alpha 15
Ifna14 4 88571229 to 88571798 569 - protein coding gene interferon alpha 14
Ifna-ps1 4 88578887 to 88580573 1686 - pseudogene interferon alpha gene, pseudogene 1
Ifna9 4 88591813 to 88592385 572 - protein coding gene interferon alpha 9
Mrpl48-ps 4 88599175 to 88599810 635 - pseudogene mitochondrial ribosomal protein L48 pseudogene
Ifna12 4 88602580 to 88603376 796 - protein coding gene interferon alpha 12
Gm12601 4 88612653 to 88614044 1391 - pseudogene predicted gene 12601
C87499 4 88627320 to 88634186 6866 - protein coding gene expressed sequence C87499
Ifna13 4 88643641 to 88644459 818 - protein coding gene interferon alpha 13
Gm13281 4 88648738 to 88649304 566 - pseudogene predicted gene 13281
Ifna16 4 88676287 to 88676856 569 - protein coding gene interferon alpha 16
Tlsr1 4 88682921 to 95069538 6386617 QTL thymic lymphoma suppressor region 1
D4Wsm1 4 88682921 to 88683067 146 DNA segment DNA segment, Chr 4, WSM 1
Ifna2 4 88683207 to 88683779 572 - protein coding gene interferon alpha 2
Ifnab 4 88690599 to 88691268 669 - protein coding gene interferon alpha B
Gm13273 4 88696191 to 88696698 507 - pseudogene predicted gene 13273
Gm13282 4 88707909 to 88708453 544 - pseudogene predicted gene 13282
Klhl9 4 88718292 to 88722465 4173 - protein coding gene kelch-like 9
Tssr42388 4 88719101 to 88719106 5 - TSS region transcription start site region 42388
Tssr42389 4 88720026 to 88720031 5 - TSS region transcription start site region 42389
Cpgi14430 4 88721767 to 88722701 934 CpG island CpG island 14430
Gm26566 4 88721805 to 88722842 1037 + protein coding gene predicted gene, 26566
Tssr42390 4 88722454 to 88722485 31 - TSS region transcription start site region 42390
Tssr42391 4 88722502 to 88722515 13 - TSS region transcription start site region 42391
Tssr1228 4 88722521 to 88722529 8 - TSS region transcription start site region 1228
Gm13274 4 88723681 to 88744717 21036 - antisense lncRNA gene predicted gene 13274
Tssr42392 4 88744348 to 88744353 5 - TSS region transcription start site region 42392
Gm49884 4 88754471 to 88754678 207 + pseudogene predicted gene, 49884
Gm13271 4 88754868 to 88755416 548 + protein coding gene predicted gene 13271
Cpgi14431 4 88757416 to 88757761 345 CpG island CpG island 14431
Gm13286 4 88757844 to 88758380 536 + pseudogene predicted gene 13286
Gm10583 4 88758171 to 88758570 399 - pseudogene predicted gene 10583
Gm13283 4 88760774 to 88761584 810 + protein coding gene predicted gene 13283
Gm10582 4 88761101 to 88761500 399 - pseudogene predicted gene 10582
Gm13284 4 88763709 to 88771606 7897 + pseudogene predicted gene 13284
Gm10581 4 88771550 to 88771784 234 - pseudogene predicted gene 10581
Gm13290 4 88773834 to 88774801 967 + protein coding gene predicted gene 13290
Gm10580 4 88774321 to 88774720 399 - pseudogene predicted gene 10580
Gm13289 4 88776922 to 88777470 548 + protein coding gene predicted gene 13289
Gm13272 4 88779850 to 88780660 810 + protein coding gene predicted gene 13272
Ifnz 4 88782131 to 88783592 1461 + protein coding gene interferon zeta
Gm26525 4 88784455 to 88794391 9936 - lincRNA gene predicted gene, 26525
Gm13276 4 88785709 to 88786257 548 + protein coding gene predicted gene 13276
Gm13277 4 88788632 to 88789180 548 + protein coding gene predicted gene 13277
Gm13278 4 88791550 to 88792098 548 + protein coding gene predicted gene 13278
Gm13275 4 88794487 to 88795035 548 + protein coding gene predicted gene 13275
Gm26867 4 88796143 to 88800224 4081 - lincRNA gene predicted gene, 26867
Gm13279 4 88797397 to 88797945 548 + protein coding gene predicted gene 13279
Gm13285 4 88800320 to 88800868 548 + protein coding gene predicted gene 13285
Gm13287 4 88803254 to 88803802 548 + protein coding gene predicted gene 13287
Gm13288 4 88805531 to 88808380 2849 + protein coding gene predicted gene 13288
Ifna7 4 88816228 to 88816800 572 + protein coding gene interferon alpha 7
Ifna11 4 88819959 to 88820531 572 + protein coding gene interferon alpha 11
Ifna6 4 88827416 to 88827985 569 + protein coding gene interferon alpha 6
Ifna5 4 88835525 to 88836094 569 + protein coding gene interferon alpha 5
Ifna4 4 88841861 to 88842421 560 + protein coding gene interferon alpha 4
Ifna1 4 88850087 to 88850656 569 + protein coding gene interferon alpha 1
Ifna 4 88850617 to 88850951 334 complex/cluster/region interferon alpha
4930553M12Rik 4 88867233 to 88868380 1147 - lincRNA gene RIKEN cDNA 4930553M12 gene
Cpgi14432 4 88868074 to 88868450 376 CpG island CpG island 14432
Tssr37771 4 88868474 to 88868500 26 + TSS region transcription start site region 37771
Gm34457 4 88871741 to 88874895 3154 + lncRNA gene predicted gene, 34457
Ifne 4 88879538 to 88880201 663 - protein coding gene interferon epsilon
Tssr42393 4 88880206 to 88880228 22 - TSS region transcription start site region 42393
Gm49890 4 88909855 to 88938521 28666 - lincRNA gene predicted gene, 49890
Mir31 4 88910557 to 88910662 105 - miRNA gene microRNA 31
Tssr42394 4 88910569 to 88910573 4 - TSS region transcription start site region 42394
Tssr42395 4 88917244 to 88917254 10 - TSS region transcription start site region 42395
Tssr42396 4 88917281 to 88917288 7 - TSS region transcription start site region 42396
Cpgi14433 4 88937811 to 88938913 1102 CpG island CpG island 14433
Tssr42397 4 88938423 to 88938433 10 - TSS region transcription start site region 42397
Tssr42398 4 88938435 to 88938479 44 - TSS region transcription start site region 42398
Tssr42399 4 88938877 to 88938888 11 - TSS region transcription start site region 42399
Tssr42400 4 88942037 to 88942053 16 - TSS region transcription start site region 42400
Gm34568 4 88956416 to 89031301 74885 + lncRNA gene predicted gene, 34568
Tssr42401 4 88982591 to 88982624 33 - TSS region transcription start site region 42401
Gm49891 4 88995118 to 89039192 44074 - lincRNA gene predicted gene, 49891
Tssr37772 4 89050240 to 89050248 8 + TSS region transcription start site region 37772
Tssr37773 4 89050273 to 89050280 7 + TSS region transcription start site region 37773
Tssr37774 4 89050296 to 89050324 28 + TSS region transcription start site region 37774
Wincr1 4 89050307 to 89084610 34303 + lincRNA gene WNT induced non-coding RNA 1
Pitm2 4 89063832 to 89063979 147 QTL prion incubation time 2
Nss1 4 89063832 to 89063979 147 QTL NOD Sjogren's syndrome 1
D4Mit27 4 89063832 to 89063979 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 27
Berr4 4 89063832 to 89063979 147 QTL berghei resistance locus 4
D4Mit301 4 89099304 to 89099407 103 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 301
Gm12602 4 89100664 to 89128226 27562 - lncRNA gene predicted gene 12602
Tssr37775 4 89123314 to 89123325 11 + TSS region transcription start site region 37775
Tssr37776 4 89123331 to 89123347 16 + TSS region transcription start site region 37776
Tssr37777 4 89124249 to 89124260 11 + TSS region transcription start site region 37777
Tssr42402 4 89126542 to 89126556 14 - TSS region transcription start site region 42402
Tssr42403 4 89128217 to 89128237 20 - TSS region transcription start site region 42403
Cpgi14434 4 89137113 to 89138007 894 CpG island CpG island 14434
Mtap 4 89137370 to 89181090 43720 + protein coding gene methylthioadenosine phosphorylase
Tssr37778 4 89137374 to 89137447 73 + TSS region transcription start site region 37778
Tssr37779 4 89152116 to 89152120 4 + TSS region transcription start site region 37779
Gm12607 4 89161699 to 89162191 492 - pseudogene predicted gene 12607
Tssr37780 4 89182291 to 89182294 3 + TSS region transcription start site region 37780
Gm26490 4 89182981 to 89183120 139 - snoRNA gene predicted gene, 26490
Tgif2-ps1 4 89216864 to 89217816 952 + pseudogene TGFB-induced factor homeobox 2, pseudogene 1
Gm12606 4 89235699 to 89273403 37704 - lincRNA gene predicted gene 12606
Cpgi14435 4 89273087 to 89273758 671 CpG island CpG island 14435
Cdkn2a 4 89274473 to 89294619 20146 - protein coding gene cyclin dependent kinase inhibitor 2A
Tssr42404 4 89274576 to 89274583 7 - TSS region transcription start site region 42404
Cpgi14436 4 89274931 to 89275091 160 CpG island CpG island 14436
Cpgi14437 4 89276411 to 89277077 666 CpG island CpG island 14437
Cpgi14438 4 89281927 to 89282549 622 CpG island CpG island 14438
Tssr42405 4 89282113 to 89282151 38 - TSS region transcription start site region 42405
Tssr42406 4 89282152 to 89282161 9 - TSS region transcription start site region 42406
Tssr42407 4 89282181 to 89282188 7 - TSS region transcription start site region 42407
Cpgi14439 4 89294130 to 89295782 1652 CpG island CpG island 14439
Tssr42408 4 89294506 to 89294511 5 - TSS region transcription start site region 42408
Tssr42409 4 89294531 to 89294545 14 - TSS region transcription start site region 42409
Tssr42410 4 89294554 to 89294588 34 - TSS region transcription start site region 42410
Tssr42411 4 89294608 to 89294611 3 - TSS region transcription start site region 42411
Tssr37781 4 89294756 to 89294769 13 + TSS region transcription start site region 37781
Tssr37782 4 89294862 to 89294903 41 + TSS region transcription start site region 37782
Tssr37783 4 89295297 to 89295307 10 + TSS region transcription start site region 37783
Tssr37784 4 89302880 to 89302884 4 + TSS region transcription start site region 37784
Cdkn2b 4 89306299 to 89311039 4740 - protein coding gene cyclin dependent kinase inhibitor 2B
Cpgi14440 4 89306922 to 89307402 480 CpG island CpG island 14440
Cpgi14441 4 89310419 to 89311265 846 CpG island CpG island 14441
Tssr42412 4 89310959 to 89311015 56 - TSS region transcription start site region 42412
Tssr42413 4 89311021 to 89311025 4 - TSS region transcription start site region 42413
D4Mit300 4 89359490 to 89359613 123 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 300
Gm12609 4 89381957 to 89399880 17923 + unclassified non-coding RNA gene predicted gene 12609
D4Mit245 4 89382838 to 89382954 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 245
Gm12610 4 89421848 to 89463487 41639 + lncRNA gene predicted gene 12610
Abd1 4 116413923 to 89063832 -27350091 QTL autoimmune biliary disease 1
W10q10 4 140740892 to 89063832 -51677060 QTL weight 10 weeks QTL 10
W3q17 4 140740892 to 89063832 -51677060 QTL weight 3 weeks QTL 17
W6q13 4 140740892 to 89063832 -51677060 QTL weight 6 weeks QTL 13
Lvrq8 4 140740892 to 89063832 -51677060 QTL liver weight QTL 8
Bmd7 4 151570093 to 89063832 -62506261 QTL bone mineral density 7