Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:87936087-88896100

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spir2 4 50682795 to 88592400 37909605 QTL Streptococcus pneumoniae infection resistance 2
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Mllt3 4 87769925 to 88033364 263439 - protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
Tssr42366 4 87944663 to 87944667 4 - TSS region transcription start site region 42366
Gm34232 4 87974620 to 87985631 11011 - lncRNA gene predicted gene, 34232
Tssr42367 4 87983282 to 87983306 24 - TSS region transcription start site region 42367
Tssr42368 4 87986262 to 87986266 4 - TSS region transcription start site region 42368
Tssr42369 4 88001710 to 88001732 22 - TSS region transcription start site region 42369
Tssr42370 4 88019527 to 88019531 4 - TSS region transcription start site region 42370
Cpgi14428 4 88031239 to 88033791 2552 CpG island CpG island 14428
Tssr42371 4 88031700 to 88031732 32 - TSS region transcription start site region 42371
Tssr42372 4 88032735 to 88032749 14 - TSS region transcription start site region 42372
Tssr42373 4 88032769 to 88032802 33 - TSS region transcription start site region 42373
Tssr42374 4 88032805 to 88032822 17 - TSS region transcription start site region 42374
Tssr42375 4 88032839 to 88032863 24 - TSS region transcription start site region 42375
Tssr42376 4 88033277 to 88033288 11 - TSS region transcription start site region 42376
Tssr42377 4 88033289 to 88033315 26 - TSS region transcription start site region 42377
Tssr42378 4 88033328 to 88033373 45 - TSS region transcription start site region 42378
Gm12631 4 88033501 to 88034998 1497 + antisense lncRNA gene predicted gene 12631
Gm12646 4 88043804 to 88044041 237 + pseudogene predicted gene 12646
Cpgi14429 4 88094356 to 88095263 907 CpG island CpG island 14429
Tssr37762 4 88094599 to 88094653 54 + TSS region transcription start site region 37762
Focad 4 88094630 to 88411011 316381 + protein coding gene focadhesin
Tssr37763 4 88094660 to 88094672 12 + TSS region transcription start site region 37763
Mir491 4 88122040 to 88122125 85 + miRNA gene microRNA 491
Tssr37764 4 88124432 to 88124441 9 + TSS region transcription start site region 37764
Gm12645 4 88151696 to 88151970 274 + pseudogene predicted gene 12645
Tssr37765 4 88157693 to 88157698 5 + TSS region transcription start site region 37765
Tssr1227 4 88165553 to 88165559 6 + TSS region transcription start site region 1227
Tssr37766 4 88179553 to 88179568 15 + TSS region transcription start site region 37766
Tssr37767 4 88209782 to 88209822 40 + TSS region transcription start site region 37767
Tssr37768 4 88353856 to 88353867 11 + TSS region transcription start site region 37768
Tssr37769 4 88353888 to 88353899 11 + TSS region transcription start site region 37769
Tssr37770 4 88353900 to 88353913 13 + TSS region transcription start site region 37770
Hacd4 4 88407687 to 88438936 31249 - protein coding gene 3-hydroxyacyl-CoA dehydratase 4
Tssr42379 4 88416087 to 88416100 13 - TSS region transcription start site region 42379
Tssr42380 4 88418264 to 88418281 17 - TSS region transcription start site region 42380
Tssr42381 4 88419000 to 88419013 13 - TSS region transcription start site region 42381
Tssr42382 4 88428081 to 88428085 4 - TSS region transcription start site region 42382
Tssr42383 4 88429001 to 88429007 6 - TSS region transcription start site region 42383
Gdap6 4 88431729 to 88432926 1197 unclassified gene ganglioside-induced differentiation-associated-protein 6
Tssr42384 4 88438127 to 88438131 4 - TSS region transcription start site region 42384
Tssr42385 4 88438885 to 88438894 9 - TSS region transcription start site region 42385
Tssr42386 4 88438900 to 88438933 33 - TSS region transcription start site region 42386
Ifnb1 4 88522025 to 88522774 749 - protein coding gene interferon beta 1, fibroblast
Tssr42387 4 88522842 to 88522847 5 - TSS region transcription start site region 42387
Ifna15 4 88557673 to 88558245 572 - protein coding gene interferon alpha 15
Ifna14 4 88571229 to 88571798 569 - protein coding gene interferon alpha 14
Ifna-ps1 4 88578887 to 88580573 1686 - pseudogene interferon alpha gene, pseudogene 1
Ifna9 4 88591813 to 88592385 572 - protein coding gene interferon alpha 9
Mrpl48-ps 4 88599175 to 88599810 635 - pseudogene mitochondrial ribosomal protein L48 pseudogene
Ifna12 4 88602580 to 88603376 796 - protein coding gene interferon alpha 12
Gm12601 4 88612653 to 88614044 1391 - pseudogene predicted gene 12601
C87499 4 88627320 to 88634186 6866 - protein coding gene expressed sequence C87499
Ifna13 4 88643641 to 88644459 818 - protein coding gene interferon alpha 13
Gm13281 4 88648738 to 88649304 566 - pseudogene predicted gene 13281
Ifna16 4 88676287 to 88676856 569 - protein coding gene interferon alpha 16
D4Wsm1 4 88682921 to 88683067 146 DNA segment DNA segment, Chr 4, WSM 1
Tlsr1 4 88682921 to 95069538 6386617 QTL thymic lymphoma suppressor region 1
Ifna2 4 88683207 to 88683779 572 - protein coding gene interferon alpha 2
Ifnab 4 88690599 to 88691268 669 - protein coding gene interferon alpha B
Gm13273 4 88696191 to 88696698 507 - pseudogene predicted gene 13273
Gm13282 4 88707909 to 88708453 544 - pseudogene predicted gene 13282
Klhl9 4 88718292 to 88722465 4173 - protein coding gene kelch-like 9
Tssr42388 4 88719101 to 88719106 5 - TSS region transcription start site region 42388
Tssr42389 4 88720026 to 88720031 5 - TSS region transcription start site region 42389
Cpgi14430 4 88721767 to 88722701 934 CpG island CpG island 14430
Gm26566 4 88721805 to 88722842 1037 + protein coding gene predicted gene, 26566
Tssr42390 4 88722454 to 88722485 31 - TSS region transcription start site region 42390
Tssr42391 4 88722502 to 88722515 13 - TSS region transcription start site region 42391
Tssr1228 4 88722521 to 88722529 8 - TSS region transcription start site region 1228
Gm13274 4 88723681 to 88744717 21036 - antisense lncRNA gene predicted gene 13274
Tssr42392 4 88744348 to 88744353 5 - TSS region transcription start site region 42392
Gm49884 4 88754471 to 88754678 207 + pseudogene predicted gene, 49884
Gm13271 4 88754868 to 88755416 548 + protein coding gene predicted gene 13271
Cpgi14431 4 88757416 to 88757761 345 CpG island CpG island 14431
Gm13286 4 88757844 to 88758380 536 + pseudogene predicted gene 13286
Gm10583 4 88758171 to 88758570 399 - pseudogene predicted gene 10583
Gm13283 4 88760774 to 88761584 810 + protein coding gene predicted gene 13283
Gm10582 4 88761101 to 88761500 399 - pseudogene predicted gene 10582
Gm13284 4 88763709 to 88771606 7897 + pseudogene predicted gene 13284
Gm10581 4 88771550 to 88771784 234 - pseudogene predicted gene 10581
Gm13290 4 88773834 to 88774801 967 + protein coding gene predicted gene 13290
Gm10580 4 88774321 to 88774720 399 - pseudogene predicted gene 10580
Gm13289 4 88776922 to 88777470 548 + protein coding gene predicted gene 13289
Gm13272 4 88779850 to 88780660 810 + protein coding gene predicted gene 13272
Ifnz 4 88782131 to 88783592 1461 + protein coding gene interferon zeta
Gm26525 4 88784455 to 88794391 9936 - lincRNA gene predicted gene, 26525
Gm13276 4 88785709 to 88786257 548 + protein coding gene predicted gene 13276
Gm13277 4 88788632 to 88789180 548 + protein coding gene predicted gene 13277
Gm13278 4 88791550 to 88792098 548 + protein coding gene predicted gene 13278
Gm13275 4 88794487 to 88795035 548 + protein coding gene predicted gene 13275
Gm26867 4 88796143 to 88800224 4081 - lincRNA gene predicted gene, 26867
Gm13279 4 88797397 to 88797945 548 + protein coding gene predicted gene 13279
Gm13285 4 88800320 to 88800868 548 + protein coding gene predicted gene 13285
Gm13287 4 88803254 to 88803802 548 + protein coding gene predicted gene 13287
Gm13288 4 88805531 to 88808380 2849 + protein coding gene predicted gene 13288
Ifna7 4 88816228 to 88816800 572 + protein coding gene interferon alpha 7
Ifna11 4 88819959 to 88820531 572 + protein coding gene interferon alpha 11
Ifna6 4 88827416 to 88827985 569 + protein coding gene interferon alpha 6
Ifna5 4 88835525 to 88836094 569 + protein coding gene interferon alpha 5
Ifna4 4 88841861 to 88842421 560 + protein coding gene interferon alpha 4
Ifna1 4 88850087 to 88850656 569 + protein coding gene interferon alpha 1
Ifna 4 88850617 to 88850951 334 complex/cluster/region interferon alpha
4930553M12Rik 4 88867233 to 88868380 1147 - lincRNA gene RIKEN cDNA 4930553M12 gene
Cpgi14432 4 88868074 to 88868450 376 CpG island CpG island 14432
Tssr37771 4 88868474 to 88868500 26 + TSS region transcription start site region 37771
Gm34457 4 88871741 to 88874895 3154 + lncRNA gene predicted gene, 34457
Ifne 4 88879538 to 88880201 663 - protein coding gene interferon epsilon
Tssr42393 4 88880206 to 88880228 22 - TSS region transcription start site region 42393